Clupea harengus (Atlantic herring): 105890101
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Entry
105890101 CDS
T09045
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105890101 (trpa1b)
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
105890101 (trpa1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
Transcrip_act
Motif
Other DBs
NCBI-GeneID:
105890101
NCBI-ProteinID:
XP_012671527
Ensembl:
ENSCHAG00000021829
UniProt:
A0A6P3VHD9
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Position
17:complement(4990182..5015345)
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AA seq
1104 aa
AA seq
DB search
MPVSRESSFYKCVIDTDDATLDSDKVFECAHQGNTAYLENIIRKHPECLAAKDETGATLF
HHATSGGSLEVIRLLVSATGPEGLNPRDEQGSTPLHWAVEKHKEGSCALLLDLGADPNIL
NTALMSPLHLAISKGHNGMVELLLSFSATDANLEGDLGNSPVMLACSNNNCQALDILFNY
GARLCSQNKLGHYAIHTVAFAGAKEAMEVILKKGEETGHSLETHINYLDKSHCSPLHLAV
RGGNTEVIKLCIDKGARVHQQQADKSTALHLACTQGAIEAVKLMLSSSCHGEDIINMRDG
AHQTPLHRATIFDHVELAEYLISKGADIDCIDCKGLSPLLLATSCGAWRAVAFLLSKGAN
IKIKDKEGRNFLHLVTFQPKGLKNIPEHVLQTDAVRALLCDEDNEGCNPLHYACRLGIHD
SVKNILGLQVCPKRKSKNKKSAFHFAAEYGRINTCHRLLETITDSQMLNEGDEHGLTPLH
LAARAGHTKVVDLLLRKGALFQSDYKDMTCLHHAAAEGYTQTMKILLAANIKLLDKTDED
GNTALHLAAREGHAAAVKLLMERGADILLNKSNASFFHEAVHHGKKEVADTIIEHERCNE
AIKNFKIKSDHRCVVIDLIEFLPESYKHLLDQCVSESDHDVNCPDYHIQYNFQWLQAPIQ
LKKYAATDKSLKVQPLACMNAMVQYNRIELLTHPICNKYLEMKWLAYGSRVHLINLVIYL
LGLLPLTFLIVNLRPTQTTGQNGTSVVVGPIPISQNSYLITPSIIMVLVMSSYAILKQMM
QMSQQKSRYFKDPSNPAEWASSIASLVFTIPLMFGVGDNWVWEAGAVAILLAWINFLLYL
QRFEHFGIYVVMFGEIIKTLFSVIVLVIFLVLAFGLSFYALMLHQSEFHWIGLSLAQTFV
MMVGELNYNSNFFGAFESKRLAFPQITYMVFVFFILLMPILLMNLMIGLAVGDIAEVQRN
ASLKRISMQIDLHTNLEKKLPYWILKRVDKSSITVYPNKTCANRSVFRFFHSRDVSAVRS
RLNTSSQELTPVETELRKQKLRLREICSILEKQHTMVKLILQKMEITSEADDYDGPDDAF
SGRRGRAQTSKWIPLMRSLQSSHH
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgccagtctccagggagagcagtttctacaaatgcgtgatcgacacagacgatgcaacc
ctggattcggataaagtcttcgaatgcgctcaccaagggaacacggcgtacctagagaac
atcatcaggaaacacccagagtgcctggcggccaaggatgagaccggcgccaccctattc
caccacgccacctccgggggaagcctggaggtcattcggctgctggtcagtgccaccgga
ccggagggactgaacccgcgtgatgagcagggtagtacaccactgcactgggccgtggag
aagcataaggagggcagctgtgcgctcctgctggacttgggagccgaccccaacatcctc
aacaccgccctcatgtcccccttacacctggccatcagcaagggacacaacggcatggtg
gagctgctgctatccttcagtgccacggacgccaacctggagggagacctgggaaactcc
cccgtcatgctggcctgctccaacaacaactgccaggccctggacatactgtttaattat
ggtgcaagactgtgttctcagaataagctgggccactatgctatccacactgtggccttt
gctggagccaaagaggccatggaagtgattctgaagaaaggggaagagactggacacagc
cttgagactcacatcaactaccttgacaaatctcactgcagtcctctacatttggcggtg
cgtgggggaaacactgaagtgatcaaactctgcattgacaaaggggcaagagtgcatcag
caacaggctgacaaatccacggctctgcacttggcctgcactcaaggtgccattgaggca
gtgaagctcatgctgtcctccagttgccacggggaggacatcatcaacatgagggacggg
gcacaccagacccccctgcacagggcaacgatattcgatcatgtagaattggcagaatat
ctcatttcaaagggagcagacatcgactgcatcgactgtaagggcctctcgccactgctg
ctggccacaagctgtggagcatggagggccgtggcctttctactgtccaaaggagcaaat
attaaaatcaaggataaagagggacggaacttcttgcatcttgtcactttccagcccaaa
ggactgaaaaacatcccggagcacgtcttacagaccgacgctgtgagggccctcttgtgt
gatgaggataacgagggatgcaatcccctgcactacgcctgcagactgggcatccacgac
tctgtcaagaacatcctgggcctgcaagtttgcccaaaacgcaaatccaaaaacaagaaa
tcagcctttcactttgcagctgaatatgggcgtataaacacatgccatagactgctggag
accatcacagactcacagatgctgaacgagggtgatgaacatggcctcacgcccctgcac
ctggcggcccgggcaggccacaccaaagtggtcgatctgctgctcaggaaaggagctttg
tttcaaagtgattacaaagacatgacgtgtttacatcatgctgctgcagaggggtacaca
cagaccatgaaaatcctcctggcggccaacatcaaactactggacaagactgatgaggat
gggaacacagctctgcacctggctgccagagagggacatgctgctgcggtgaaacttctg
atggagaggggtgctgacattcttctgaacaagagtaatgcctccttcttccatgaagca
gtgcatcatgggaaaaaggaagtggcagacaccattattgaacatgagagatgtaacgaa
gctattaaaaattttaagataaaatctgaccatcgctgcgtggtcattgacttgattgag
ttcctccctgagtcttacaagcacttgctggaccagtgcgtcagtgagtcagaccatgac
gtcaactgccctgactaccatatccagtacaatttccagtggctccaagctccaattcaa
ctgaaaaaatacgcagcgacggacaagagtctgaaagtccaacctctggcttgtatgaat
gccatggtgcagtacaaccgcattgaacttcttacccaccccatctgcaataaatacctt
gaaatgaaatggctggcgtacggaagcagagttcacctgatcaatctggtcatctacctg
cttggcttgctgcccctcaccttcctcattgtcaacctgaggcccacgcagaccaccggc
cagaatggaacatctgtcgtggtgggccccatcccaatcagccagaacagttacctaatc
acccccagcatcatcatggtcctcgtcatgagctcatacgccatcctgaagcagatgatg
caaatgtcacagcagaaatcgaggtacttcaaagatccctcaaacccagcggaatgggcg
agttccatcgcctctttggtcttcacgattcccctcatgtttggtgtgggggacaactgg
gtgtgggaggcaggagctgtggccattctcttagcttggatcaacttcctgctttacctg
caaaggtttgagcattttggcatttacgtggtgatgtttggtgaaatcatcaaaacgttg
ttcagtgtcatcgtgcttgtaatcttcttggtcctggcgtttggattgtctttctatgct
ctcatgctccatcagagtgagtttcactggataggcctgtctctggctcagacctttgtc
atgatggtgggggagctcaactataatagcaacttctttggcgccttcgagagcaagcgg
ctggccttcccccagatcacctacatggtcttcgtcttcttcatcctcctcatgcccatc
ctactcatgaacttaatgattggtttggcagtcggagacattgcagaggtgcagaggaac
gccagtctgaagaggatctccatgcagattgatcttcacacaaacctggagaaaaagctt
ccatattggatccttaagcgagtggacaagtcctccatcactgtttatcccaataagacc
tgcgcaaataggagtgtgttcaggttcttccactcgagggacgtgtcggcggtgcggagc
cgtctcaacaccagcagccaggagctcacgcctgtggagacggagctgaggaagcagaag
ctcagattaagggaaatatgcagtatcctggagaagcaacacaccatggtgaagctgatc
ctgcagaagatggagatcacatctgaagcggatgattatgacggccctgacgatgccttc
agcggcagaagaggcagggctcagacgtccaaatggatccccctcatgaggtcccttcag
tcgtcccatcactag
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