Clupea harengus (Atlantic herring): 105890146
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Entry
105890146 CDS
T09045
Symbol
lama1
Name
(RefSeq) laminin subunit alpha-1 isoform X1
KO
K05637
laminin, alpha 1/2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105890146 (lama1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105890146 (lama1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105890146 (lama1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Laminin_EGF
Laminin_B
Laminin_N
Laminin_II
Laminin_I
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
105890146
NCBI-ProteinID:
XP_031440245
Ensembl:
ENSCHAG00000025578
UniProt:
A0A6P8GZL6
LinkDB
All DBs
Position
17:1128542..1191874
Genome browser
AA seq
3081 aa
AA seq
DB search
MKFFLAIVLLWTSSVECQQRGLFPAMLNLANNAEITSNATCGNPRPEMYCKLVEHVPGRR
IRNSQCRTCDANSANPKEQHPIAYAIDGTNQWWQSPSIKNGRQFHWIDITLDLRQVFQVA
YVIIKAANSPRPGNWVLERSLDGVNFTPWQYYAISDTECLTHYNVTPRIGPPTYKKDNEV
ICTSYYSRLVPLEHGEIHTSLINGRPGADDLTPELLEFTSTRFIRLRLQRIRTLNADLMT
LSHRDPKELDPIVTRRYYYSIKDISVGGMCICYGHAQSCPLDLITKQLHCVCEHNTCGES
CNECCPGYHQQLWQPGTLSVGNTCEKCNCHNKAEDCFYNATVAELRRSLNLHDQFVGGGV
CIDCSQNTAGVNCETCADGFFRPHKVSPYADNPCVECNCHTRGTHSPACIRDDKHASPLK
GLHPGQCLCKEGFAGERCDRCAFGYRNFPLCTRCECSLDGSVNVDPCNECVCKANVMGAY
CDLCKQGFFNLQGLNPEGCTECFCFGVSDVCESLLWPTSQVDHLDGWLVPTTPSTSIYTA
PLIEDNLIIPSNVTSYRFLYTWAAPESFLGNKLTSYGGFLKYSVAYDIAVENVDKTLPSH
FDLIIEGNGRSLRQSPSRRLLLTPLREQEVSVEVVPHSFVDLHTSRRIQRDELMTVLADV
ANLRVRVYLNTSTEGDLRLSQVSLDTARRNSSSSLQAIGVEQCECPWGYSGTSCEYCISG
FYRVDGILFGGNCLQCECNYHATQCDINGVCVGCSHNTTGPHCDQCLPGFYGDPFEGTAE
DCQRCACPLTVASNNFSPTCSVENSGEVTCDQCQRGYTGPKCERCADGYHGDPTAPGQGC
VPCQCNGNVDPEEPGHCDPGTGECLKCVGHSAGRSCERCADGYYGDAVSAKNCQACGCHG
NGSLASVCHVVTGQCECRHHVEGGKCDRCEVGFHGLLSGQGCAACNCSQSGSTSVACDEE
GQCQCITGVAGDKCDRCQQGYYNFQEGGCTPCDCAYTHGNCHPETGECICPPHTKGDKCE
LCEENYWGHNPMTGCKSCDCSVAGSSSSQCNVTAGQCPCLESFDGQRCDRCAMGFKDFPQ
CTACNCNINGTQEEFCDEKLGVCGCEEQGSCMCKANVGGGGCDECTRGTFGLTAENPAGC
SPCFCFGVSSDCEEMGGLVRVPLTLGEDPERLHVVSQSNLRGTLEGVYVQNAEMLLDTSQ
LENSLLTGPYYWRLPIHFQGHKLLSYGGKLSYSVVFYAMDAAGLSNYEPQVLIRGGRLKK
VVIYIDMPAPENGMKTRQEVPLTEHKWKYFNSVSEKPVSHPDFMSVLSNIEYITIKASYG
TGLQQSRIANISMDIAMDAEDGPEFTEVAGLIESCECPRGYAGLSCQECAPGYYRQPVSE
LNMKGMNRPLIQPCVPCGCNNHSLACDLETGECLGCQHHTAGERCHVCAQGYYGAVRGSI
RDCSLCACPLQTNSFSPSCVLEGVGDYRCNACQPGYEGRYCERCSVGYYGNPSEPGGRCQ
QCQCSTAGSVHQVCHHLTGQCDCKVGVRGHTCEECEARHVLIKDQCVSCDDQCTGVLLDD
LDALDVSISSVNLSGIILAPFSLLLSLEDQTRQIQDLMSWEKSSSHKTNKAEAAVTNFTK
QIDDLEEKAKTVSKYGEEVIQSTEKRITQGNKLLEFINKTRATIQALEEEVGRLNETAKE
EMSETNSTVLLGQVEAMLEQIRGLNITNANTSALTELSEAVAVLEKVQRQIGEPRQAVES
QMEAIVTVLSNHTHQLQEAKELIMVARGHNNQTTQLLSIINITLDQYTTLKHNVSTNTQE
VTSQMEEAQDLLTDALNIGGDMDNITSTLEETRDELEMRYPTLRKHVDTLVMDLSKRDAL
QIVYRAEDHAKALHKEAEAHNGSLSEVRGASENATIAALANTNIRGDIQAAEDLALTAIQ
NATDVLNQTQSEEPMNGQGTRALQHSMDILEKSYRMSNYSDGLVVNLTDMTDRLALAKAN
IRNISQLIPEASTFLKDLPSGSKQVQETKEQAEGVNASLLKALGRLEHLQVKLGQSTSTV
AEANSTARGTNEMVTDSEKTTSEAAAKLNEVEVWTERLFDRMKPLKTLGENLSRNLSEIK
EMISQARRQAASIKVAVLAEHDCVRAYKPEVSSSNINTVTLTVKTTEPDNLLFYMGSSSA
ADFMALETHHGKVSFTWDAGSGHAKLEYPDVQINNNKWQRINATRFGKHGTLTVQQLDSA
PLPTVKATAPGSSTVMDITKDTWIFVGGLGKQIKKSSAVKLKQFKGCMGEASLNEKNIGL
WNYAEREGQCRGCFKSPQAEETSFHFDGSGYSVVEKSLRSTATSIVMFFKTLSPNGLLLY
LASNGTRDFLSIELVDGKVRLTFELGSGPLTMTTTKVYNTGTWYKIALQRNKRKGYLAVM
AADNPSEREVTEKEAPDGNSDLNRSDLDPIYIGGLPMSRPIRRQVVARSYVGCIKNVEIA
RTNFDLLRNSYGVKKGCVLEPIRRMSVLGGGFLEMPSISLDPQMELMATFSTKNMSGLIL
AGFGKMANRKRRQTHQPFLAVMLVSGRLEVHVNMAEGGSSHKAVIRSSTGTFADGKEHSL
ILQRSKRTMHVLVDEDHQTSVRLGSSADKGSLILDHLYVGGVPPGEGSRVLSITTAFYGC
IRNLALNTELLDLSNALRYEGVDMDSCLLEERPKRVVLPDEADLEPTPDPAKPPQAPPTE
LSAITPGSTSCATMDDTGTLGESHQFGLSRNSHMILAFKNRTVRTSFSVKLSVRTFAGSG
VLFYMANANQQDYAVLQVHGGHLFFACDLGKGPATASLPKRINDGLWHTVKTELGKKNVK
ISVDGEESTRVQLKGHTLDVEGNLYLGGLPSTYIPRRIGNVTHSLAGCVQGVLLNSVKMN
TKRPLSAHATGECFSSAQEGTFFSGSGYAAFVKEGYNVGSDVTVSLEFRSTGLDGVLLGV
SSPKIDAIGLELVNGQVVFNVNNGAGRTLASSRSSRWFCDGRWHTVVAKKFKNSISITVD
GLTVTTPNPYLSSTSAETKNPIYVGGYPADVKQNCLTTKTAFQGCMRNLRIYKGHVTDVL
DFGSAFLLHGVTPNSCPGRTA
NT seq
9246 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcttccttgcaattgtgctgctctggacatcctctgtggagtgccagcaaaga
ggtctgttccctgccatgctcaacctggccaataatgctgagatcacttccaatgccacc
tgcgggaaccctcggcctgagatgtactgcaagctggtggagcacgtgccaggcagacgc
attcgtaactcacagtgcaggacctgtgatgccaacagcgccaaccccaaagagcaacat
cctattgcctacgctatcgatggcactaaccagtggtggcagagtcccagcatcaagaac
ggccgacagtttcactggatcgacatcactctggacctcagacaggtcttccaggtggcc
tacgtgatcatcaaggcggccaactcccctcgtcctgggaactgggtgctggagcgttcg
ctggacggggtgaacttcacgccctggcagtactacgccattagcgacacggagtgcctg
acgcactacaacgttaccccccgcatcggaccccccacctacaagaaggacaacgaggtc
atctgcacgtcctactactctcgactggtgcctctggagcatggcgagatccacacatct
ctgatcaacggcaggcctggcgctgacgacctgaccccggagctgctggagttcacctcg
acccgcttcattcgcctgcgtctgcagcgcatccgcaccctcaacgccgacctcatgacc
ctcagccaccgcgaccccaaggagctcgaccccatcgtcacccgccgctattactactca
atcaaggacatctcagtaggtgggatgtgcatctgctatggccacgcccagagttgcccc
ttggacctcatcaccaagcaactgcactgtgtgtgtgagcacaatacatgtggcgagagc
tgcaatgagtgttgccccggctaccaccagcaactgtggcaaccaggaaccctctctgtt
ggcaacacttgtgagaagtgtaactgccacaacaaagcggaggactgcttctacaacgcg
acagtggccgagctgaggaggagcttgaaccttcacgaccagttcgtgggaggtggtgtg
tgtatcgactgctcacagaacaccgcgggggtgaactgcgaaacctgcgccgacggattc
ttcagacctcacaaggtgtctccgtacgctgataacccgtgtgtggagtgcaactgccac
acgagaggcacccactcgccagcctgcatcagggatgacaaacacgccagcccactgaaa
ggtttgcacccaggccagtgtctgtgtaaggagggctttgcgggcgagcgttgcgaccgc
tgtgctttcggctacaggaacttccccctgtgcacgcgctgcgagtgcagtctggatggc
agtgtcaacgtggacccctgcaacgagtgtgtctgcaaggccaacgtgatgggagcctac
tgtgacctgtgcaagcaaggcttcttcaacctgcaggggctcaacccggagggctgcacg
gagtgcttctgctttggagtgtctgacgtgtgcgagagcttgctgtggcccacatctcag
gtggatcacctggacggctggctggtccccaccaccccgagcacctccatctacacggcc
cctcttatcgaggacaacctgatcatccccagcaacgtcacctcctaccgcttcctctac
acctgggccgcgccagagagcttcctgggaaacaagttgacttcatacggcggcttcctg
aaatacagcgtggcgtatgacatcgccgtggagaacgtggacaagactctgccctctcac
tttgacttgattattgagggcaacgggcggtccctccgtcagtccccgtcccgccgcctg
ctcctgactcctctgcgggagcaggaggtgtctgtggaggtggtgccacacagctttgtg
gacctgcatacgagccggcgcatccagagggacgagctcatgacggttctggccgacgtg
gcgaacctgagggtccgagtctacctcaacaccagtaccgagggggacctgaggttgagt
caggtctctctggacacagccaggcgtaactcctccagctccctgcaggctatcggtgtg
gagcagtgcgagtgtccctggggctactcggggacgtcctgtgagtattgtatctccggc
ttctaccgtgtggatgggatcctgtttggtggaaactgcctccagtgtgagtgtaattac
cacgctacacagtgtgacatcaacggcgtatgtgtgggttgcagtcacaacaccactggg
ccccactgtgaccaatgcctgcccggtttctatggcgaccccttcgagggcaccgctgag
gactgccaaagatgcgcctgcccgctgactgtggcgtcgaacaatttcagccccacctgc
tctgtggagaattcaggagaggtgacatgtgaccagtgccagagaggatacactggaccc
aagtgtgagaggtgtgcggacggttaccacggggaccccaccgcccccgggcagggctgc
gtcccgtgccagtgcaacggcaacgtggaccccgaggagccgggccactgtgaccccggc
accggggagtgcctcaagtgcgtgggtcacagtgcaggacggagctgcgagaggtgcgcc
gacggttactatggcgatgccgtctcggccaagaactgccaggcttgtggttgccatgga
aacgggtccttggccagtgtgtgtcacgtggtgacgggccagtgtgagtgcagacaccac
gtggaaggagggaagtgtgaccggtgcgaggtgggcttccatggccttctcagcggccag
gggtgtgccgcgtgcaactgtagccaatcaggttccacctcagtggcgtgtgacgaggag
ggacagtgccagtgcatcacgggtgtcgcgggtgacaagtgtgaccgctgccagcagggc
tactacaacttccaggagggaggctgcacaccctgtgactgtgcctacacccatggcaac
tgtcacccggagacgggggagtgtatctgtcctccacacaccaagggagacaagtgtgag
ctgtgtgaggagaactactggggacacaaccccatgaccggctgcaagtcctgtgactgc
agtgtggcaggctcctcatcctcccagtgtaatgtcaccgctggccagtgcccgtgtctg
gagtcctttgacggccagagatgcgaccgctgcgccatgggcttcaaggacttcccacaa
tgcactgcatgcaactgcaacatcaacggcacacaggaggagttctgtgacgagaagctg
ggcgtgtgtggctgtgaagagcagggcagctgcatgtgcaaggccaacgtgggcggagga
ggatgcgatgagtgcacgcggggcacgttcggcctgactgctgagaacccggccggctgc
agcccctgcttctgtttcggcgtctcgtcggactgcgaggagatggggggcctcgtcaga
gtgccgctgacactgggagaggacccagagcgcctccatgtggtgagccagagtaacttg
cggggcacgctggagggggtgtacgtgcagaatgctgagatgctgctggacaccagccag
ctggagaactccctcctgactgggccgtactactggagactgcccattcacttccagggc
cacaagctgttgtcttatggagggaagctgtcgtactctgtggtcttctacgccatggat
gcagcaggtctgtccaactacgagcctcaggttctgatccgtggaggtcgactgaagaag
gtggtcatctacattgacatgcctgcccctgagaatggcatgaagacccgacaggaagtc
cctcttactgagcataaatggaagtatttcaactcggtctctgagaaacctgtcagccac
ccagacttcatgtctgtcctgagtaacattgaatacatcaccatcaaagcctcatatgga
actggactgcagcagagcaggatcgcgaacatcagcatggatattgccatggatgcggag
gacgggccggagttcacagaagtggcaggcttgatcgagtcctgtgagtgtccacgcggt
tacgcaggactgtcctgccaggagtgcgccccaggttactacaggcagccggtgtccgag
ctgaacatgaaggggatgaaccggccgcttatccagccctgcgtgccctgcgggtgtaac
aaccacagcctggcctgcgacctggagaccggagagtgcctgggctgccagcaccacacg
gccggtgagcgctgccacgtctgtgcccaaggctactacggcgcggtgaggggctccatc
agggactgttccctgtgcgcctgccctctccagactaacagcttcagtccctcctgtgtg
ctggagggtgttggggattaccgctgtaacgcctgccaacccggctacgagggccgctac
tgcgagaggtgttctgtgggttactatggcaacccttcagagccaggcgggcgctgtcag
cagtgtcagtgcagcacggcggggtctgtccatcaggtgtgtcatcacctgacgggtcag
tgcgactgtaaggtgggcgtgaggggacacacctgcgaggagtgtgaggccagacacgtg
ctgatcaaagaccagtgtgtgtcttgtgatgaccagtgcacaggggtcttactagatgac
ctggatgctctggacgtctccatctcttctgtgaacctgagcggcatcatcctcgccccc
ttcagtctgctgctgtccttggaggatcagacgcggcagattcaggacctcatgtcatgg
gagaaaagctcaagtcataagacgaacaaggcagaggctgctgtgactaacttcactaaa
caaattgacgaccttgaggaaaaggccaagactgtgtccaaatacggagaggaagtgatc
caatcaacagaaaagcggattacacagggcaataaattactggagtttatcaataagact
cgtgctactatacaagctctggaagaggaggtgggtcgtctgaatgagacagcgaaggag
gagatgagcgagaccaacagcaccgtcctactggggcaggtggaggccatgctggagcag
ataagaggcctcaacatcaccaacgccaatacctcagccctcactgaactcagtgaggcg
gtggcagtccttgagaaggtacagagacagattggggagcctcgccaagccgtcgagtct
cagatggaggccatcgtcacggtgctgtccaatcacacgcatcagctgcaggaggccaag
gagctcattatggtggccagggggcataacaatcagaccactcagctgctcagtatcatc
aacatcactctggaccagtacactactttgaagcacaacgtgagcaccaacacccaggaa
gtgacctcacagatggaggaggcccaggacctcctgactgatgctctgaacatcggtgga
gacatggacaacatcacatctactctggaggagacacgcgatgagctggagatgcgctac
cccactctgaggaagcacgtggacacgctggtcatggacctcagcaagagagacgctctg
cagatagtctacagggccgaggaccacgccaaggcactgcacaaagaggcagaggctcac
aacgggtctttgtctgaggtgcgcggagcgtcagagaatgccaccattgcagccctggcc
aacactaacatccgaggagacatccaggcagcggaggacttagcattgacagccatccag
aatgccactgacgtactcaaccagactcagtcagaggagccaatgaatggacaggggaca
cgggccctgcagcatagcatggacatcctggagaagagctaccgcatgagcaactacagt
gatggtcttgttgtgaatctcaccgatatgactgacaggctggctctggccaaagccaac
atccgcaacataagccagctgatcccagaggcgtctacattcctcaaggaccttcccagt
ggtagcaaacaggtccaggagaccaaggagcaggcggaaggggtcaacgcctctctgctg
aaggctctgggtcgtctagagcacttgcaggtcaagctagggcagtccacctccaccgtg
gccgaagccaacagcaccgccaggggcaccaacgagatggtcaccgactcagaaaagacc
accagtgaggcggcggcgaagctgaatgaggtggaggtgtggacggagcgtctctttgac
aggatgaagcctttgaagacgctgggggagaacctgagcaggaacctgtccgagatcaaa
gagatgatcagccaagctcgcaggcaggccgcctcgatcaaagtggcagtactggcagag
cacgactgcgtcagggcctacaagcctgaggtctcctccagcaacatcaacaccgtcacc
ctgacagtgaagacgaccgaacccgacaacctgctattctacatgggcagcagctccgcc
gcggactttatggcccttgagacgcatcatgggaaggtgtcattcacatgggatgctggg
tcaggtcacgccaagctggagtaccccgacgtgcagatcaacaacaataagtggcaacgg
attaacgcaactcgtttcggcaagcatggcacactgacagttcagcagctggattctgcg
cccttgccaacagtaaaggcaactgccccagggtcatctacagtcatggacatcactaag
gacacctggatatttgttggtggtctaggcaaacaaatcaagaagtcctcagcagtgaag
ttaaagcagttcaagggctgtatgggagaagcctcgctgaacgagaagaacattgggtta
tggaactatgcagagagagaaggacagtgtcgtggctgcttcaagagtcctcaggcagag
gagacctctttccatttcgatggcagcggatactctgtggtggagaagtccctccgctcg
acagccaccagtatcgtgatgttcttcaagactctctcacccaatggcctactcctctac
ctggcatcaaacggaacgagagactttttgtccattgagctggtggacggaaaagtgcgt
ttgacctttgaactgggatctggacccctcaccatgacaaccaccaaagtgtacaacaca
ggaacctggtacaaaattgccctgcagagaaataaacgcaaaggctatttggccgtcatg
gcagcagacaacccctcagagcgtgaggtcacagagaaagaggctccagatgggaattcc
gacctcaaccgctccgacctcgaccccatttacatcggaggcctccctatgtctcgacca
atcaggaggcaggtggtggcacgctcatatgtaggatgcatcaaaaacgtggagattgct
cgcacaaactttgacttgctgaggaattcctatggtgtaaagaaaggttgtgttctagag
cccatccgcagaatgtcggtgctgggtggaggtttcctggagatgccctccatcagcctg
gatccccagatggagctcatggccaccttctccacaaagaatatgtcaggcctgatcctc
gctggctttggcaagatggcgaaccgcaagcgccgacagacacaccagcctttcctggct
gtcatgctcgtgtctggtcgactggaggtccatgtaaacatggctgagggagggagttcc
cacaaagctgtcatcagatcctcgacaggaacctttgctgatgggaaagagcactctctc
atcctgcagaggagcaaaaggacgatgcacgtgctggtggatgaggaccaccagacctca
gtgagactgggctcctcggccgataaaggctcactgatcctggaccacctctacgtggga
ggagtgccaccaggagagggcagcagagtgctctcaatcaccaccgccttctacggctgc
atcaggaacctcgccctgaacaccgagctgttggacctgtccaatgccctgcggtacgag
ggagtggacatggacagctgtctcctggaggaacggcccaaacgggtggttctgcccgac
gaggcggatctagagcccacccctgacccggccaaacccccacaggcacctccaaccgag
ctcagcgccatcacaccaggctccacctcctgtgctaccatggacgacacaggaaccctc
ggtgaatcccaccagtttgggctgtccaggaacagccacatgatcctggccttcaaaaac
aggacagtgagaacgagcttctccgtgaagctctcggtgcgcacgttcgctggcagcggc
gtgctgttctacatggccaatgccaatcagcaggactacgccgtgctgcaggtgcatggt
gggcatctcttcttcgcctgtgacctgggcaaagggcctgccaccgcctccctgcccaag
cgcattaacgacggcctctggcacaccgtaaagacagagttgggtaagaagaatgtgaag
atcagtgttgatggagaggagtccactcgcgttcagctcaaagggcacacacttgacgtg
gaaggaaacctctacctgggaggcctgccttccacctacatcccccggaggatcggaaat
gtgacccacagtctggcgggctgcgttcagggcgtgctgctgaacagcgtgaagatgaac
accaagaggccgctctcggcgcacgccaccggcgagtgtttcagctcggcgcaggagggc
accttcttcagcggcagtggatacgcggcattcgttaaagagggctacaatgtgggctca
gatgtgaccgtgagtttggagttccgctctaccggactggacggagttctgttgggagtc
agcagccccaagattgatgccattggcctggagctggtcaatggacaggtggtctttaac
gtgaacaacggggcgggccgtaccttggcgtcctcgcggagcagtcgctggttctgtgat
ggccgctggcacaccgtggtggccaagaagttcaagaacagcatcagcatcaccgtggac
gggctcaccgtcaccacacccaacccctacctctcatccacctcagccgaaaccaaaaat
cccatctacgtgggaggatatccagctgatgtgaagcagaactgcctgaccacaaagact
gcgttccaaggctgcatgcgtaacctgcgtatttacaaaggtcacgtgactgacgttttg
gactttggctcagcgttcctcctccatggcgtcactcccaactcctgccctggaagaacc
gcctaa
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integrated database retrieval system
