Clupea harengus (Atlantic herring): 105890221
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Entry
105890221 CDS
T09045
Symbol
boc
Name
(RefSeq) brother of CDO
KO
K20020
brother of CDO
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
105890221 (boc)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
char04515
]
105890221 (boc)
Cell adhesion molecules [BR:
char04515
]
Immunoglobulin superfamily
Other
105890221 (boc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
Pur_ac_phosph_N
C2-set_2
Ig_4
Ig_5
Motif
Other DBs
NCBI-GeneID:
105890221
NCBI-ProteinID:
XP_031440275
Ensembl:
ENSCHAG00000002384
UniProt:
A0A6P8GZP4
LinkDB
All DBs
Position
17:5347014..5380933
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AA seq
1059 aa
AA seq
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MSGPLDWIPWARKRRVQALCALGAVLLCCHQGGASSSTSTNDDMPVFTEEPMSVVQKPGG
IVTLRCSVLPPHANISWHLNGRELLADDCAELGVVLKPGSLDIVSLSNQTIGRYQCVAST
AVGACASVPANVTAAKLRDFEPDLQQDIEVDEGNTAVIECHLPESQPKAQVRYSVKQEWL
ETSKGNYLIMPSGNLQIANATQEDEGAYKCAAYNPVTQEVKTSISADRLRIRRSTSEAAR
IIYPPDSRSIMVTKGQRLVLECVASGIPTPQVTWAKDGLDLRHHNNTRFLLSNLLIDTTT
ESDSGTYACHANNGIGSPGTATVQYDVQVFEPPQVRVELQQPEAVWGDTVRFVCQVRGKP
APSVVWLHNARPLATSPRHRLAARTLRVLAVGPQDDGIYQCLAENGVGSSQAAARLLTLP
TGSPSRGSRLPLLPPLSPDKVLREQPPLRPPLSQAPVDCSEVRGHVIPAEAPIILSQPRT
VKADFYELTWKPRHDGGSPVLEYIVKYRKAGDPPGDWTTSSISGSVYKLTLAKLQPASLY
EVEMTSKNCAGLGQPAMMTFRTGRGRKLDKDQNGPKTQLLSSPRLSPPEAPDRPTVSTAT
ETSAYVTWIPRGNRGFPIQSFRVEFKRLRKGGDNEWEVAVENIPPSRLSVEVTNLEKGTS
YKFRVLAVNVLGASPPSAPSKPYAVVGSGKSSNPRPVDGPYITYNEAINETTIILKWTYA
PVNNTPIYGFYIYYRPTDSDNDSDYKRDVVEGDRYWHSITDLQPETAYDIKMQCYNEGGE
SEFGNVVILETKARPHQRSTPPETASQRPEHSGGPVPRPGDLPYLIVGLVLGALVIIIVA
FIPFCLWRALTKQKQAADLCFPAVASPVSSCQYTMVPMQGMALMGHCPLDPHMAPPHAIY
PNGEYIPNGKVPTHTLPGMHQEDGHCEMECDTLLPQSLPNGHAPAYHYANGGPVHHEEEE
EEEEEEEEDCCLPDDSTLELLRPPQTLGSQQSLELQHIPSEATTLEDEILADLPSCTLST
PVEDTNATMPFEDELLPDMNTRHNLQLPDDEETWDTADG
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaccattagactggattccctgggccagaaagcgtcgggtccaagcgctctgt
gcactgggtgcagttctgctctgctgccaccagggcggcgccagcagcagcaccagcacc
aacgatgacatgccagtcttcactgaggagcccatgtctgtggttcaaaagccggggggc
attgtgaccctgcgctgtagcgtcctcccgccccatgccaacatcagctggcatctgaat
gggcgcgagctccttgcagacgactgtgcagagctgggcgtggtcttaaagcccggctcc
cttgacatcgtgtctcttagcaaccagactatcggacgctaccagtgtgtggcgagcaca
gctgtaggagcatgtgccagcgtacctgccaacgtcaccgcagcaaagctgcgtgacttt
gagcccgatctccagcaggacattgaggtggatgaggggaacactgcagtcattgagtgc
cacctgcctgagagccagcccaaagcccaggtgcgctacagcgtcaagcaggagtggctg
gagacctccaaagggaactacctgattatgccatcagggaatctgcagatagccaatgcc
acccaagaggatgagggcgcatataagtgtgcagcctacaaccctgtcacccaggaggtg
aagacctccatctccgctgatcggctgcgtattcgacgctccacctctgaggcggctcgc
attatctaccctccggactcgcgttccatcatggtgaccaaaggccagcggctggtgctg
gagtgcgtcgccagtggcatccccaccccgcaggtcacatgggccaaggacggcttggac
ctgcgtcaccataacaacacgcgcttcctcctcagcaacctgctcatcgacacaaccacc
gagagcgactcgggcacctacgcgtgccacgccaacaatggcatcggctcgcctggcacc
gccaccgtccagtacgatgtgcaggtttttgagccccctcaggtgcgtgtggagctgcag
cagccggaggcagtgtggggcgacacggtgcgcttcgtgtgccaggtgcggggcaagccg
gctcccagcgtggtgtggctgcacaacgcccgtccgctggccacctcgccgcggcaccgc
ttggcggcgcgcaccctccgcgtgctcgccgtgggcccccaggacgacggcatctaccag
tgccttgccgagaatggagtgggcagctcgcaggccgctgcacgactcctcaccctgcca
actggctccccttctcgtggctctaggttgcccctcctgccccccctgagtcctgataag
gtgctgcgtgagcagccccccctgcgtccccccctcagccaggcgccggtggactgctca
gaggtgcggggtcacgtgatccccgccgaggcgcccatcatcctcagccagccgcgcacc
gtcaaggccgacttctacgagctcacctggaaaccgcgccacgacgggggctctcctgtg
ctggagtacattgtcaagtacagaaaggcgggtgaccccccgggggactggaccaccagc
agcatctctggctccgtgtacaagttgaccttggccaagctgcagcctgccagcctctac
gaggtagagatgacctccaagaactgtgctggcctcggacagccggccatgatgaccttc
agaacgggcagagggcgtaaactggacaaggaccaaaatggaccaaaaacccagctgctg
tcttctcctcgtctctcccctccggaagcccccgaccgacccaccgtctccacggcgacc
gagacgtctgcgtacgtgacttggatcccccgcggcaacaggggcttccccatccagtcg
tttcgggtggagttcaagaggctgcgcaagggcggagacaacgagtgggaggtggcggta
gagaacatccctccgtcacgactctctgtggaggtcaccaacctggagaaaggaacctcc
tacaagttccgtgttctggcagtgaatgttctgggggcgagcccccctagtgctccgtcc
aagccttacgctgtggtgggcagtggcaagtcctccaacccacgcccagtggacggaccc
tacatcacctacaatgaggccatcaacgagaccaccatcatcctcaagtggacgtatgca
ccagtgaacaacacccccatctacggcttctacatctactaccggcccactgacagcgac
aacgacagtgactacaagagagacgtggtggaaggtgaccgctactggcattccatcact
gaccttcagccagagaccgcctacgacatcaagatgcagtgctacaacgaggggggtgag
agcgagtttgggaacgtggtcatcctggagactaaagctcgtcctcatcagcgtagtact
cctcctgagacggcctcccagagaccagaacattccggaggtccggtgccacgccctggt
gacctgccctacctgatcgtgggcttggtgctgggagccctcgtcatcatcatcgtggcc
ttcatcccattctgcctctggagggcgctaaccaaacagaagcaagctgccgacctttgc
ttcccagccgtggcaagccccgtctcctcatgccagtacaccatggtgcccatgcagggt
atggcactgatgggccactgccctctggacccacacatggcgccccctcatgccatctac
cccaacggagaatacatccccaacggcaaagtgcccacccacaccctgccaggaatgcac
caggaggatggtcattgtgagatggaatgtgacacactccttccacagtctctacccaac
ggacatgcacctgcttatcactatgccaacggtggccctgtgcaccatgaggaggaggag
gaggaggaggaggaggaggaggaggactgctgtttgccagatgactcgacgctggagctc
ctccggccccctcagaccctgggctcccagcagtcactggagctacagcacatccccagc
gaggccaccaccctggaggacgagatcctggcagacctgccaagctgtactctatccact
ccagtggaggacacgaatgccacaatgccttttgaagatgaattactaccagacatgaac
accagacacaacctacagctgcctgacgacgaagagacgtgggacacagccgatggctaa
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