Clupea harengus (Atlantic herring): 105890271
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Entry
105890271 CDS
T09045
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105890271 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105890271 (pan3)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105890271 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
105890271 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
Motif
Other DBs
NCBI-GeneID:
105890271
NCBI-ProteinID:
XP_031439895
Ensembl:
ENSCHAG00000015966
UniProt:
A0A6P8GYQ8
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All DBs
Position
17:3629476..3643833
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AA seq
481 aa
AA seq
DB search
MVLTCFLLCLQVFPTYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQID
HSENPDVPSELDSYHSLFPLEPLPPPNRLQKTSNFSYITSCYKAVNTKDDLPYCLRRIQG
FRLVNTKCMMLVDMWKKIQHSNAVTLREVFTTKAFGDHSLVFSYDFHAGAETMFSRHFND
PTADSFFTKRKWGQHEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPSK
ILITGKTRLRVNCVGVFDVLTFDNSQTNHLALMPQYQQADLISLGKVVLALACNSLAGIQ
RENLQKAMELVSINYSSDLKNLILYLLTDQSRMRSVNDIMPMIGARFYTQLDASQMRNDV
IEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAG
TPWVDLSHIVACLNKLDAGVPEKVSLVSRDEKSVLVVTYSDLKRCFESTFQELLAAANGS
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggtgctcacatgtttcctgttgtgtttgcaggtgttccctacctatcacatctaccct
ccaacagctcctcatgtggcctacatgcagcccaaagccaacgccccgtccttcttcatg
gctgatgagctccgacaggagttgatcaacaggcatctaatcaccatggcccagattgac
cattcagagaacccagacgtcccctcggagttggacagctaccacagcctcttccccctt
gagccccttcccccgcccaaccgcctgcagaagaccagcaacttcagttacatcacttcc
tgttacaaggccgtcaacaccaaggacgacctgccctactgtttgaggaggatacaggga
tttcggctggtgaacaccaagtgcatgatgctagtggacatgtggaagaagatccagcac
tcgaacgcggtcactctgagggaggtgttcaccaccaaggcctttggagaccactcgctg
gtgttctcctatgacttccacgcgggagcagagaccatgtttagcaggcacttcaacgac
ccaacggcagactctttcttcaccaaaaggaaatggggacaacatgagcccccccctcca
cggcagcacgctggtctgctccccgagtctctgatctgggcatacatcgtgcagctgagc
tccgccctgcgcaccatccacaccgccggactggcctgccgcgtcatggaccccagcaag
atcctcatcacgggcaagacccggttacgggtgaactgtgttggcgtctttgatgtctta
acattcgacaacagccagaccaaccacctggctctcatgccccagtaccagcaagcggat
ctcatctccttgggtaaggtggttctggcgctggcctgtaactcgctggccggcatccag
agggagaatctgcagaaggccatggagctggtgtccatcaactactcgtcagacctcaag
aacctcatcctgtatctgctgacagatcagagtcgcatgcgcagtgtcaatgacataatg
ccaatgatcggggccagattctacacccagctggacgcctcgcaaatgaggaacgatgtc
attgaagaggacctggccaaggaggtccagaatggacgtcttttccgcctcctggccaaa
ctgggaaccatcaacgaaaggcctgagttccagaaggaccccacatggtcggaaacgggt
gaccgctacctgctcaagctcttcagagaccatctcttccaccaggtcaccgaggcgggg
acgccctgggtcgacttgagccacatagtggcatgtctcaacaagctggacgcaggcgtt
ccagagaaggtcagcctggtgtctcgggacgagaagagtgtgctggtggttacctactcc
gacctgaagcgctgtttcgagagcaccttccaggagctgctggccgctgccaacggctcg
ttgtag
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integrated database retrieval system
