Clupea harengus (Atlantic herring): 105890552
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Entry
105890552 CDS
T09045
Symbol
cicb
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105890552 (cicb)
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
105890552 (cicb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
105890552
NCBI-ProteinID:
XP_031431537
Ensembl:
ENSCHAG00000012970
UniProt:
A0A6P8G7B0
LinkDB
All DBs
Position
11:complement(1060680..1094570)
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AA seq
1415 aa
AA seq
DB search
MFSSESPQYLRQGLSMFVWTNVEPRSVPVFPWHSLVPFLAPTQPDPVSQTGEGQQPVNQP
QAAILKKEPQGCVVQLKEACDAPPSMDRGPPRPTPITEDQPPDRDKERDGERERPESETE
SDVDDAFFTGVMPDPPMSVVPVKRRTQSLSALPKDGDKNSPGKREKDHIRRPMNAFMIFS
KRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCN
KDRKKSSSDGRGLAGAKDIRERSMSETTEPPSVSLGMDLKGMGSGMVGVADRGGGEGPVG
QLTRPRAFSQSAVHTLECSERGNTQALAELAQMCADGGPQLSGRLPPPLPRAHKGVSEDM
TSDEERMVICEEEGDDDVIEDPYPASSIDLKCKERVTDSDSENGSGDEGEHKRVFGGVIC
SSSSTHHGRSISLSAYPSRRYGDGDAASSKRRRGGEGGGGAMTFPGVGSVGLGACPLRGA
STVVTSVVRPIVSTPVPIASKPRDSTHSHKAPPTTQLLIGPATAGGAGYSSSSSSSPNPM
SAGAVPGGLVTNLVVGGAFPAQPAVQLFSPSHHYSGHSHSNGPAPLSLLQPQLLPASLAP
SAGGKALAQVQYILPTLPKSPSPQLSNHPTSVFTLPTAPPTHVSLANGKQAGASASLAGY
ASSPAVGVVSPGAGVQTQSQVLQGKMIVPMATVRTVQAPSQPTFPLVAPPLPVQNGAQTG
SKIIQIAPMPVVQSQLPTGGAVHSGSPFPVSMGTAAVVTPGSTPSQAVLLPPPPTRITYV
QSTPGIPSPLPLVSTTTGSTQPTPHPSGSAYVPSPLATLGFTAIAPPGQTLVQPLVPGQT
PLLTPIPSSNCPSLPSVPAQASGAGGKIVTAAIYPPTSVTLATGVVSVATVPPSVVYTVS
SPSSLSPHILPKHTPSPPLTHTHTHTHTSPQADRHLPHPTLERQTDRQPESYSPQTDRQT
DRSPLPHAQASSKAPASSSAPPSGTAVPLRPTSPPAPIHTGSAPGTPKLVCHPVRVPQKV
KATVASIPVGNYEANSRGKEREKEREREREKEKDRERERDREREKDREREREREDRERES
TPRFSFEMDHPAESGTSPARPADEGSSEAHGTGDSLATSGRKEPPTKEAGWKDSHPSSPP
PGPDPTLPPPPQGDKDAPPAKKVKVRPPPLKRTFDSVDNRVLSEVYFEERFAELPEFRPD
EVLPSPTLQSLATSPRAILGSYRRKRKNSTDLDSSTEDPVSPKRKSHRRSSCSSEPNTPK
SAAKCEGDIFTFERPAADGEDILGELEFEKVPYSSLRRTLDQRRALVMQLFQEHGFFPSA
QATAAFQGRYSDIFPTKVCLQLKIREVRQKIMQTAAPSEITGQSSSDPASQPGPSGMQAG
DGSGGAELLEQEADREAEYSSSDESRAAATAAAHR
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgtctgaaagcccccagtatcttcgccagggactcagcatgtttgtgtggacc
aacgtggagccccggtcagtcccagtgtttccatggcattcattggttcccttccttgca
cccacccaaccggatccagtgtctcagacgggggagggacaacaacctgtcaatcagccg
caggcggccattctgaagaaagagccccaggggtgtgtggtgcagctgaaggaggcctgt
gatgcccccccctcgatggacagagggcccccccgccccacccccatcacagaggaccag
cctccggaccgggacaaggagagggacggggagagggagaggccagaaagcgagaccgag
agtgatgtggatgatgcgttcttcacaggggtaatgccggacccccccatgtctgtggtc
cccgtgaagaggaggactcagtctctcagcgcgctgcccaaagatggggacaagaatagt
ccaggaaagagggagaaggaccacatcaggaggcccatgaatgcgttcatgatcttcagt
aagcgtcaccgcgccctggtccaccagcgccaccctaaccaggacaaccgcaccgtcagc
aagatcctgggggagtggtggtacgcgctgggccccaaggagaagcagaagtatcacgac
ctggcctttcaggtgaaagaggcccactttaaggcccaccccgactggaagtggtgtaac
aaagacaggaagaagtccagctcagatgggcggggcttagcgggagccaaagatatcagg
gagaggagcatgtctgagaccaccgagcctccgtctgtgtctctgggaatggacctgaag
gggatgggctctgggatggtgggcgtggctgaccgtggtggaggggaggggcctgtaggt
cagctgacccgccctcgagctttttcccagagtgctgtgcacactctggaatgcagtgag
cgggggaacacacaggccctggctgagctggcacagatgtgcgctgacggagggccccag
ctgtcgggccggctgcccccccccctgccgcgcgcccataagggggtcagtgaggacatg
accagcgacgaggagcgcatggtcatctgcgaggaggagggcgacgatgatgtcatcgag
gatccatacccagccagttctatagacctcaagtgtaaggagcgggtgacagacagtgac
agcgagaacggatcaggagacgaaggagaacacaagagagtgttcggcggagtcatctgc
tcctcctcctccacccatcatgggcggagcatctccctctccgcctacccgtctcgtcgc
tatggcgacggggatgcagcgagctcgaagaggaggaggggaggagagggagggggcggg
gctatgacattccctggagtggggtctgtggggttgggggcgtgtcctttgcggggggcg
tcgaccgtggtgaccagtgtcgtgcgtccgatcgtcagcacgcccgtacccatcgccagc
aagccccgagactccacccacagccataaagctccgcccaccacacagcttcttattgga
ccagcaactgcaggaggggctgggtactcctcctcctcctcctcatcgcccaatcctatg
agcgcaggggcggttcctggagggctggtgaccaatctcgtagtgggaggggcgttccca
gcccagcctgctgtgcagctttttagcccctcccaccactactctggccactcccacagt
aatggccccgcccctctgtccctgctgcagcctcagctgctgccggcctctctcgcgccc
tctgctgggggaaaggcgctggcgcaggtgcagtacatcctgcccaccctccccaagagc
ccctccccccagctgtcaaaccatccaaccagtgtcttcaccttgccgacagccccaccc
acacatgtctcactggccaatgggaagcaggcgggggcgtcggcatcattggcgggctac
gcctccagtcctgcagtgggagtggtcagccctggggcaggagtgcaaactcagtcacaa
gtcttgcagggcaagatgatagttcccatggcaacagtaaggacagtgcaggctccttct
caacccacatttcctcttgtggctcctcctcttcctgtccagaacggagcccagacagga
agtaagatcatccagatcgctcctatgcctgttgtccaatcacagctccccacaggagga
gcagtgcattctgggagccccttccccgtttccatgggaactgccgcagtggtcacccca
gggtccaccccctcgcaagcggtgctgctgccgccccctccaacaaggattacttatgtc
cagtccaccccaggcatcccctctcctctgcccctggtatccacgacaacaggctccacc
cagccgaccccacacccttcaggatctgcatatgtgccgtcgcccctggcaacgcttggc
ttcactgcgattgctccacctggccagacactcgttcagccactggtcccaggtcagact
cccctgctgacccccatcccgtcctctaattgcccttctctgccctctgttcctgcccaa
gcctcaggagccggggggaagattgtgacggcggccatctaccctcccaccagcgtcacc
ctggcaacgggggtggtttccgtggcaacggtgccacccagtgtggtgtacaccgtgtcc
agcccctccagcctgtccccccacatcctgcctaaacacactcccagcccgcccctcaca
cacacacacacacacacacacacatccccacaggcagaccgacacctgccccaccccacc
ctggagaggcagacagacaggcagcctgagtcttattccccacagacagacaggcagaca
gacaggtcccctctgcctcacgcccaggcctccagcaaggctccagcgagctcatcggcg
cccccatctggcactgcagtgccactgcggcctaccagtcctccagcacccatacacaca
ggcagtgcaccgggcacccctaaactggtgtgtcacccggtaagggtccctcagaaggtg
aaggccactgtggcgtccattccagtgggcaactatgaggccaacagccgagggaaggag
cgagagaaggagagagagagggagagagagaaggagaaggacagagagagggagagggac
agagagagggaaaaggacagagagagggagagagagagggaggacagagagagggagagc
acgcctcgtttctcttttgagatggaccaccctgctgagtcgggcacctctccggccagg
cctgcggacgaggggtcctcagaggcacacggcaccggcgatagcctggccacctcaggc
cggaaagagccccccaccaaagaggctgggtggaaggactcacacccctcctctcctccc
cctggtccagaccccaccctgccacccccccctcaaggggacaaagacgcccccccagcc
aaaaaggtcaaagtgcgccccccacccctcaagcgcacatttgactccgtcgacaacagg
gttctgtcggaggtgtactttgaggagcgattcgctgagctgccggagttccgaccggac
gaggtgctgccctcgcccaccctccagagtctggccacatccccccgagccatcctgggg
agctaccgccgcaagaggaagaactccaccgatctggattcatccacggaggatccagtg
tctccgaagcgcaagagtcacagacggtccagctgcagctcggagcccaacacgccgaag
agcgccgccaagtgtgagggagacatcttcaccttcgagaggccagctgctgatggagag
gacatcctgggggagttggagtttgagaaggttccgtactcgtctctgcgtcggacgctg
gatcagcggagggctctcgtcatgcagctgttccaggagcacggcttcttcccctccgcc
caggccacggcagcattccagggccgctactcggacatcttccccactaaggtgtgtctg
cagctgaagatccgggaggtgcggcagaagatcatgcagaccgccgccccctccgagatc
actggccagtcctcctctgaccccgcctcccagcccggcccctccggcatgcaggcaggt
gacggctcagggggggcggagcttctggagcaggaggcggaccgagaggctgagtacagc
agctcagacgagtccagagccgccgccaccgccgccgcccacagatga
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