Clupea harengus (Atlantic herring): 105890624
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Entry
105890624 CDS
T09045
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XX) chain-like
KO
K24357
collagen type XX alpha
Organism
char
Clupea harengus (Atlantic herring)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
TPT
Pur_ac_phosph_N
VWA_2
UAA
EamA
Fn3_Dep-1_2nd
Motif
Other DBs
NCBI-GeneID:
105890624
NCBI-ProteinID:
XP_042563453
Ensembl:
ENSCHAG00000018871
UniProt:
A0A8M1KM48
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Position
4:complement(7359830..7396206)
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AA seq
1965 aa
AA seq
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MVIPVQFLCRAVRTVGLVLFYYVFSIGITFYNKWLMKDFHFPLFMTLVHLTMIFCLSAFT
RYALQCWSGKQRVMLGWSDYIFKVAPTALSTVLDIGLSNWSFLFITISLYTMTKSSAVLF
ILLFSLVFKLEEWNPFIIVVVLLISGGLFMFTYESTQFNLEGFVMVLLASFIGGIRWTLT
QVLMQKAELGLQNPIDTMYHLQPLMFLGLFPLFLYNEGLSLCTSEKLFRVSELAPLLYSL
STLSLGGALAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAEFFGDKMTLLNWLGF
IVCLLGISLHVGLKTYYSKGKAHLVRQLPCKEGPDIELPLLRREEEEMYDEDEEQEILHL
QLFCLSLKCQFITAVTYTFWFSTGLYELQSSVIMLRHLSSQSRLLLPLLWTVLLLIAGVH
SQGRLKLTVLSEDRLQMKWKEADGPVQGYKVRVRPISDDPQPELMLTTTKGRATVAGLDS
TQEYLLQVLLLNGTMEKLVAKRRFTIDGLREDELVRSGNREQKKKSLAAGSGSGEMDDVT
ELLAALPTVLYQEPSTLAPSPTPTTAGSPTPTEPPPTAEDEAELEAVTVAVTGKTPRERK
KKKKDKNRSRADDKGGDQGTGRAEPAEESNSRDKPRKIPTLPVTVGTTSGAFECDPTTQA
DLVLLVDGSWSIGRTNFRRVRDFLEGVVTPFHIGTDRVQIALSQYSGDPRTEWQLSNFTT
KDQLVEAVRNFRYKGGNTFTGQALMHVLNENLKEEAGARAHVPRFVLLLTDGKSQDDAIA
AASKLKSVGVEIIAVGVKNADVAELKQVASAPDDLNAYNVNDFPLLSKLVSRLVRILCGK
MEERSKARRRERPTKDPVVSYPSPTDLRFSDLGSREVRPSWTPPSRWVGQYRVVFHSTEG
QTPQEVVVNGTQSSVLLTGLSSQTQYQLSIFPVYEDNVGPPLRGTFTTLPLAMPESLELT
PSSPTSLKVRWSPAVGATQYMALYFTLTDGEPDDAKEVKFGADQTDVELEDLMPATDYSV
TLYALYEDDPSDPVTAVATTFPLPPPLSVHIPMVSHSSLRVSWVPGAVDVPGHRIVCASN
HGSDAHQVEVKGANSVLLQNLSSLSRYFVSVQSHYEKGLSAPVTTNATTLKVPPPSDLRV
TNFSGSDITVRWDSAADDVVSYMMKWISLSGGKLQQLSVDGQSEGAILENVEDNKDYQLS
LSALYADGAQSEAVAIRYSTLSGAGPSSVSVSEESAVSLLVSWVPPNAHVQQYRVSFTTL
TGDTPREKTVSVPGTESRVLLQSLVPDTRYSILVTAEYRGREGGSATAQGKTASLRVSSV
SVVRSDHSSMCVSWRPVAAVSSFRVLIQALRDKQMNQEVLDASSNSHCFSQLQPETVYRI
SVYSRLETVEGAAVSILHSTAAAPIRIPIPRIFSTHTGACPDLTIRNNLVKGYDMMEAFG
LTKKAHSSVEGVAAEPFIFTTLPSYTLYRDVQLTQNTGFIHPAGIVAEHTLSMAFRLLQD
SPREPFSLWQLTDNDFQPKMGVVLDPEKKTLLYFSLDYRGEVQELTFDQPQVHKLFYGSF
HKLHLSVSQVSVSLSVDCEHIGERPARPLGALPTDGFEMLGKLVKTRGPNSGSASFQLQS
FEIVCNTSWPSEDTCCDLPAQRDEESCPSPAYACTCTSNTPGRPGDTGPPGKPGPRGEKG
EKGEPGQKGEMGPPGRVGPDGVLGPIGARGPQGITVQGKMGPPGARGEKGEAGKPGGQGL
PGPPGLQGAEGNHGPEGVRGVEGNMGSPGLTGLRGFQGMPGHPGPVGGRGHMGPVGPSGL
PGKKGDRGEKGEPQSLAIIYQLVTEACEKLMHSSEAGLLPEXDESEARPHRGASGSARRA
WHPRVQRPARSQGRAGTPGNKRDAREVWLPRGTRWAIGTLIQGTPGETKVGSQGSRGDDG
QQGLPGIAGAMGQVGEMGPPGICDSSSSCNPPPQTAEDPYYGYLP
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atggtgatcccggtacaattcctctgccgtgcggtccgcactgtgggattagtgcttttc
tactatgtcttctccattggaatcacgttctacaacaaatggctcatgaaggacttccat
tttcccctcttcatgactctggtgcacctgaccatgatattttgtctctctgccttcact
cgttatgccttgcaatgttggtctggtaaacaaagggttatgcttggctggtcagactac
atcttcaaagtggcaccaactgctttgtcaactgtgctggacattgggttatctaactgg
agctttctcttcatcaccatcagtttgtacaccatgaccaagtcttccgctgtcctcttc
atcttgctgttctcgcttgtctttaagctagaggagtggaatccattcatcatcgtggtc
gtgctgctcatctccggtggtctgttcatgttcacgtatgaatcgacccagttcaacctg
gaagggtttgtcatggttctgctcgcctccttcatcggcggcatccgctggaccctcacg
caagtcctcatgcagaaagcagaactgggtctccaaaacccgattgacaccatgtaccac
ctacagcctcttatgttcctggggctcttccccctctttctttacaatgaagggttgagc
ctgtgtacctcggagaagctgttccgtgtgagtgagctggcccctctgttgtactccctg
tccaccctgtccctgggaggtgccctggcattcggactgggattctccgagttcctgctg
gtctcccgcacgtccagcctcactctctccattgctgggatattcaaggaagtgtgcacg
ctgttgctggcggctgagttctttggagacaaaatgacgctgctcaactggctaggcttc
atcgtgtgtcttttaggcatctctctgcatgtcggccttaagacttactactccaaaggg
aaggcacacttggtgaggcagctgccctgcaaagaaggccctgacatcgagcttcctctc
ctgcgccgggaggaggaagagatgtacgatgaagacgaggagcaggagatcctgcacctt
cagttgttttgtctgtctttaaagtgtcaattcattactgcagttacgtacaccttttgg
ttttccacaggtttatatgaactccagtccagcgtcatcatgctcaggcatctgtcatct
cagtcacggctcctgctgcccctcctgtggacggttctgctgctgattgcaggggttcat
tcacaaggccggctaaaacttacagtgctatctgaggaccgactgcagatgaagtggaaa
gaggcagatggacccgttcagggctacaaggtcagagtgcgtcccatttcagatgatcca
cagccggagctgatgctgaccaccaccaagggccgggccacagtggcggggctggactcc
acgcaggagtacctcctgcaggtcctcttgctcaacggcaccatggagaaactggtggcc
aagagacgcttcaccattgacgggctgcgggaagacgagctggtccgtagtgggaaccgc
gagcagaagaagaagtccctggcggctggctccggttcaggagagatggatgatgtcact
gagctgctggcggccctgcccacagtactctaccaggaaccctccaccttagctccgtct
cctactcccaccacagcggggagccccacacccacagagccaccccctacagcagaggac
gaggctgagcttgaggccgtgactgtggccgtcacggggaagacgcccagagagaggaag
aagaagaagaaggacaagaatcgctccagggccgatgacaagggcggcgatcagggaacc
ggtcgggccgaaccagcggaggagagcaacagcagagacaaacctcgcaagatccccaca
ctacctgtcacagtggggaccacaagcggggccttcgagtgtgacccgacgacgcaggcg
gacctggtgctgctggtggacggctcctggagcattggccgcaccaatttcagacgcgtg
agggacttcctggagggcgtggtcacccccttccacatcggcacggacagggtgcagata
gctctgtcccagtacagtggagaccctcgcacagagtggcagctcagcaacttcaccacc
aaagaccagctggtggaggcagtgcgcaacttcagatacaaaggaggaaacaccttcaca
ggccaggctttaatgcatgtgttgaatgagaatctgaaggaggaggccggggcgcgagca
catgtccctcgctttgtgttgctgctcaccgatgggaagtctcaggacgacgccatcgct
gcagccagcaagctgaagagtgtaggagtggagatcatcgctgtaggtgtgaagaacgca
gatgtagctgaattgaagcaggtggcttcggcccctgatgacctgaatgcctacaatgta
aatgacttccctctgctgagtaaactggtgagccgactggtgcgaatcctctgtgggaaa
atggaggaacgcagcaaagccaggcgaagggaacgacccaccaaggacccagtggtgtcg
tacccgagccccaccgacctgcgcttctctgacctgggatccagggaggtccggcccagc
tggaccccaccttcacgctgggtcggtcagtacagggtggtgttccacagcacggaggga
cagaccccacaggaggtggttgtgaacggaacgcagtccagtgttctcttgactggcctg
tcctctcagacgcagtatcagctgtcaatcttccctgtctatgaagacaatgtggggcct
cctctgcgaggcaccttcaccaccttgccactggccatgccagagagcctggagctgacc
ccttcctcccccacgagcctgaaggtgcgctggagccctgcggtcggggccacccagtac
atggccctctacttcaccctcacagatggagaaccggacgacgctaaggaggtgaagttc
ggagcggatcagaccgatgtggagctggaggatctgatgccagccactgattactccgtc
acgctctacgccctgtatgaggatgaccccagcgaccccgtgactgctgtcgcaaccacc
tttcctctcccccctcccttgagtgtccacatccccatggtcagccacagctcgctgcgg
gtgagctgggtgcccggtgcagtggacgtgcccgggcaccgcatcgtctgcgccagcaac
catggcagtgacgcacatcaggtggaggtgaaaggtgccaattctgtactgctgcagaac
ctgtcatctctctccagatattttgtctcagtgcagtcacactatgagaaaggcctgtca
gcacctgtcacaaccaatgcaaccacactgaaagtgccgcccccctcagacctccgggtc
accaacttctcaggaagtgacatcacagtgaggtgggactcagcggctgatgatgttgtc
tcatacatgatgaagtggatctctctcagcggagggaagcttcagcagctgtcagtggat
gggcagagtgagggagccatcttagagaatgtggaggataataaggattaccagctctca
ctgtctgccctctacgctgatggagctcagagcgaggcagtggccatcagatacagcacc
ttgtctggtgcgggtcccagcagtgtgtccgtgtcagaggagtccgcagtgagtctgctg
gtcagctgggtgccccctaatgcccacgtgcaacagtaccgcgtgtccttcaccactctc
acaggagacaccccacgagaaaaaacggtgtccgttcctggcactgagagtcgtgtgttg
ctgcagtccctggtgcctgacacgcgctacagcatcctggtcactgctgagtaccgcggc
cgagagggtggcagcgctacagcacagggaaagactgccagtctgcgagtgagcagtgtg
agtgtggtgcgctcggaccactccagtatgtgtgtgtcctggaggccagtggccgccgtc
agcagcttccgcgtcctcatccaggccctcagagacaagcagatgaatcaggaggtgttg
gacgcctccagcaacagtcactgtttttctcagctgcagcccgagactgtgtatcgcatc
agcgtgtactcccgtctagagacagtagagggggctgctgtttccatcctgcactccaca
gctgcggccccaatcaggatccccataccaaggatattctccacccatactggagcatgt
cccgacttgacaataagaaacaacttagtaaaagggtatgacatgatggaggcatttggc
ttgaccaagaaggctcactcttcagtagagggggtggcagctgagcccttcatcttcacc
acactgcccagctacaccctctacagggacgtccagctgacccagaacacaggcttcatc
cacccagcgggcatagtggcagagcacaccctcagcatggcgttccgcctgctgcaggac
tcccccagagagcccttctccctgtggcagctcaccgacaacgacttccagcccaagatg
ggggtggtgctggaccctgaaaagaaaaccctgctgtacttcagcctggactacagagga
gaggtgcaggagctgacctttgaccagcctcaggtccacaagctcttctatggcagcttc
cacaagcttcacttgtctgtcagtcaagtgagcgtatccctgtctgtggactgtgaacat
attggggagagaccggcccgccctctcggagccctgcccacagatggcttcgagatgctg
gggaagctggtgaagacacgagggccaaacagcggctctgcctcgttccagctgcagtca
tttgagattgtgtgcaacacctcctggccctcagaagacacctgctgtgacctgcctgct
cagagggatgaagagagctgcccttccccggcctacgcgtgcacctgcacctcaaacacg
cccgggagaccaggggacacgggaccacctggtaagcccggtccacggggggagaaaggg
gaaaagggtgaacccggccaaaagggtgagatgggccctccaggtagggtgggtccggat
ggagtcctggggcccattggcgctcgaggccctcaaggcatcacagtccaagggaaaatg
ggaccaccaggtgcaagaggagagaaaggggaggcgggaaaaccaggaggccaggggtta
ccaggccctcctggcctacagggtgctgaggggaaccatggacctgagggagtcagaggt
gtcgagggcaacatgggatccccaggccttactggactaaggggttttcagggtatgcca
ggacaccctgggccagtgggtggcagaggacatatgggcccagtgggaccttcgggtctc
ccaggaaaaaagggggacaggggagaaaagggggaaccacagtctcttgccataatatac
cagctggtgacagaggcctgtgaaaaactaatgcacagttctgaagctggactccttcct
gaatgagatgagtcggaagcccgtccccatcgaggagccagtgggtccgccaggagagcc
tggcatcccagggtccaaaggcccgccaggtctcaggggcgggcagggacgccagggaac
aagagggacgccagggaagtctggctacccaggggaacaaggtgggccattgggacatta
atccaaggtactcctggtgagacaaaagtgggtagtcaaggttcccgaggggatgatggc
cagcaaggcctacctggcattgcaggtgctatgggtcaggtcggagagatgggcccccct
ggcatctgcgacagcagcagcagctgcaatccacctccgcagacagcagaggacccatac
tatggatacctaccatga
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