Clupea harengus (Atlantic herring): 105890674
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Entry
105890674 CDS
T09045
Symbol
smpd4
Name
(RefSeq) sphingomyelin phosphodiesterase 4 isoform X2
KO
K12353
sphingomyelin phosphodiesterase 4 [EC:
3.1.4.12
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char00600
Sphingolipid metabolism
char01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
char00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
105890674 (smpd4)
Enzymes [BR:
char01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.12 sphingomyelin phosphodiesterase
105890674 (smpd4)
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Gene cluster
GFIT
Motif
Pfam:
mit_SMPDase
Motif
Other DBs
NCBI-GeneID:
105890674
NCBI-ProteinID:
XP_012672195
Ensembl:
ENSCHAG00000010719
UniProt:
A0A6P3VID1
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Position
12:5955905..5968403
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AA seq
787 aa
AA seq
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MAGPVLQQPSYLLANLRADWTTKPLLQRCQELVKVIDDYPAKELHLIFPWLVESIFGSLD
GVIVGWNLRSLPLRTNEHGIVMDFLDPSGPMMKLVYKLQAEEYKYEMPISYLPGPVKASI
QEGVLPDSPLFHNKLQFPVSGLLTFSMSLNPFEYYMFNFASSLLSPKTYATTNATTTDNA
YFVLVDTYLKYFLPTEGNVPPSPFSDTRGTVSPPAPRSPSVPFVGYGAHSTSLLKRHISH
QPSVNADPAAQEIWRSETLLQVFVELWLHHYSLEIYQKLQSPQVKEPFSPTEEHVLVVRL
LVKHLHAFSNSLKPEQIASSPSTHSHASPLEEFKRVVVQRFVQQKLYVFLQHCFGHWPLD
ASFRAVLETWLSYIQPWRYPGEKNQPADGLIRSVPEKWASFVQENLLMYTKLFQGFLNRA
VRTDLVNAKNAQMVFRVAKVFSPPNLADMIQQAEQLFLEPELLHHRQHRVFLTPSHGGSF
LSSRQAVTTDTVFKVKSHVYSLEGQDCQYKQMFGNELRGTVLKLVQIIAQARQTAKRISD
HSAEVAANNSFLSWFGMGPSELNNTFNGGEVDDMGECVKKTHEFLDKALDCLCQIFRLNA
GQLSQVMANMASAEDDMGSKQMPDCIVGESGPMLTDLGRMQIINGQRRFEIEYQGDPELQ
PIRSYENAFLVRLLYQMSSFINSRFGNRMAALCSRTDFLGSVGRHYLRCSPASRHSPPTR
RSLESHTRPRLSLRGLASYRTLLSVLLLYLLAALLSFGPLSSTALILVAGLLYELLTHLL
VEKVKSQ
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggccggtcccgtgctgcaacagcccagttatttactggccaatttgagagctgactgg
accacaaagcctttattacaacgatgccaagaactggtaaaggtgatagatgattaccct
gcaaaggagctgcatctcatctttccttggttggtggagagcatctttggcagcttagat
ggcgtcattgttggctggaacctgcgctctctgccgctccgcaccaatgaacatgggatt
gtcatggactttctggacccgagcgggccaatgatgaagctggtgtacaaattacaagca
gaggagtacaagtatgaaatgcctatcagttatctcccaggccctgtaaaagcatctatc
caagaaggcgtcctcccagacagccctctctttcacaacaagctccagttccctgtgtct
ggcctgctgacattcagtatgtctctcaatccttttgaatactacatgttcaattttgct
tcaagtttactctcaccaaagacctacgctactacgaatgccaccaccacagacaatgca
tactttgtgctggtggacacctacctcaaatatttcctgcctacagagggcaatgtgcca
ccttcaccgttctctgatacaagaggcactgtgtcccctcctgcgccaaggtctcccagt
gttccgtttgtcgggtatggtgcacacagcaccagcctgctgaagcggcacatttcccat
cagccttcagtcaatgctgacccagccgcccaggaaatatggcgttcagagacgcttctg
caggtgtttgtagagctttggttgcatcactactctctggaaatatatcagaagttgcag
tctccacaggtgaaggagcccttcagccccacggaggagcacgtgctggtggtgcggctg
ctggtcaaacacctccacgccttctccaacagcctgaagcctgagcagatcgcatcctct
ccctccactcactcccacgccagccctctggaggagttcaagagggtggtggtccagcgg
tttgttcagcagaagctgtatgtcttccttcagcattgctttgggcactggcctttagat
gcctccttcagagcggtattagagacgtggctgagctacatccagccctggaggtaccca
ggagagaagaaccaaccagcagatggcctgatcagaagtgttccagagaagtgggcctcc
tttgtgcaagaaaatctgctgatgtacaccaagctcttccagggctttctgaaccgagcc
gtacgcacagacttggtcaacgccaagaatgctcagatggtcttcagggtggccaaagtt
ttttcccctcccaacttggctgacatgatccaacaagctgagcagctgttcctggagccg
gagctgctccaccaccggcagcaccgggtctttctcacaccgtcgcacggcggcagcttc
ctgtcctcccgccaggccgtcaccaccgacaccgtcttcaaggtgaagagccacgtgtac
agcctggagggccaggactgccagtacaagcagatgtttggcaatgagctgcggggcacg
gtgcttaagctggtgcagatcatcgctcaggcgcggcaaacggccaagagaatatcagat
cactctgccgaggtggctgccaacaactccttcttgtcctggtttggcatgggcccatcg
gagctcaacaacaccttcaacgggggcgaggtggacgacatgggcgagtgcgttaagaag
acgcatgaattcctggacaaggcgctggactgcctgtgtcagatcttcagactgaatgct
ggacagctgtctcaggttatggccaatatggcttcagcagaagacgacatgggatccaaa
cagatgcccgactgcattgtgggagagagtggccccatgctgacggacctgggcaggatg
cagatcatcaacggacaacgcagatttgagattgaataccaaggggacccagaacttcaa
cctatcaggagctatgagaatgcattccttgttcgcctcctctaccagatgtcctctttc
ataaacagtaggtttggtaaccgcatggcagcgctgtgttcgcggacggatttccttggc
tctgttggacgccactacctgagatgctccccggcctcacgccacagcccacccacgcgg
cgtagcctggagagtcacacgcgaccgcggctcagtctgcgcggactggcgagctaccgc
acactgctttcagtcctgctcctctacctgctggcagccctgttgtcattcggccccctc
tccagcacagccctcatccttgtggctggcctgctctatgaactgctcacccacctgttg
gtggagaaagtcaagtcccaataa
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