Clupea harengus (Atlantic herring): 105890727
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Entry
105890727 CDS
T09045
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
105890727 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
char04054
]
105890727 (dhx58)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105890727 (dhx58)
Pattern recognition receptors [BR:
char04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
105890727 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
ResIII
DEAD
SWI2_SNF2
AAA_11
SRP_TPR_like
AAA_22
HydF_dimer
Motif
Other DBs
NCBI-GeneID:
105890727
NCBI-ProteinID:
XP_031432098
Ensembl:
ENSCHAG00000001453
UniProt:
A0A6P8FVY9
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Position
1:complement(9122970..9127042)
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AA seq
441 aa
AA seq
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MADLGLREYQLEVVQRAARRENIIIWLPTGGGKTRAAVFVAKRHLDTTPNAKVAVLVNKV
HLVVQHYENEFRDPLRAYSVVPISGDSDEKNFFGSMVRDSDVVICTAQILQNALTNTEED
KHVELTAFTLLIIDECHHTHKDGVYNKIMEHYIKRKIEGETRLPQVLGLTASPGTGGGKT
LESAMNHVLQICANLDSVIVSTENYKPELTQVVPRPRKEYDIVEKRPLDPFEDHLKSMMK
MIHGYMAAEELIPFHEFGTQEYEADVVQLEKIAVVKENRLLSQCAIHLRKYNDALLINDT
VRMVDALQVLNEFYRSKEGFALDGTDFFLSGLFEENYMELKLLAQDMDFENPKLIRLEQT
LLEQFKKPSKCIIFSKTRQATRCLLEWVLENTKLMNAGIKAAILVGAGPGDTHMTQVLYH
MEIVAVILVIYTLDSITLPRK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcggatttagggcttcgagagtaccagcttgaagtggttcagcgggccgcgcggcga
gagaatatcatcatctggttgccaacagggggtgggaaaactcgtgctgctgttttcgtt
gcaaaaagacacctggataccacacccaatgccaaggtggctgtcctggttaataaggtg
cacctagttgtccagcactatgaaaatgagttccgtgatcccctgagggcctactccgtt
gttcccatcagtggcgattcagacgagaagaacttttttgggagcatggtacgggactcg
gacgtggtcatctgcactgcgcaaatactccagaacgctctcaccaacactgaggaggac
aagcatgtggagctcacagccttcacgctgctcatcatcgacgaatgccaccacacacac
aaggatggtgtgtataataagataatggagcactacattaagcggaagattgagggcgaa
acacgactaccgcaggtcctgggccttacagcatcaccagggacaggtggtggaaagact
ctcgaaagtgctatgaatcatgtgctgcagatatgtgccaatctggattcagtgatcgtc
tcaacagaaaactacaagcctgagctgacgcaggttgtccccaggccaaggaaggaatac
gacattgtggagaaaaggcctctggacccatttgaggaccatctgaagagcatgatgaaa
atgatccatggctacatggccgcagaggagcttatcccattccatgagtttggaacacag
gagtacgaggctgatgtggtgcagctggagaagattgctgtggtgaaagagaaccgactg
ttgtctcagtgtgcaatccacctgcgaaagtacaacgacgctcttctcatcaacgacact
gttcgcatggtggatgcactgcaggttctcaatgagttctacagatccaaagaaggtttt
gccctggacggaaccgattttttcctgtctggattatttgaagaaaattatatggagttg
aagttgctggcgcaagacatggattttgagaaccccaagttgatacgcctggagcagacc
cttctggagcagtttaaaaagccctcaaagtgcatcatcttctcaaagacacgtcaggcc
acccgctgtctcttagagtgggtgcttgaaaacaccaagctgatgaatgccggcatcaaa
gctgccatcctcgtcggcgcgggccctggcgatactcacatgacccaggtgctttatcac
atggaaattgtagctgtaatattagtcatttacacattggattcaattaccttgccaagg
aaatag
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