Clupea harengus (Atlantic herring): 105890789
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Entry
105890789 CDS
T09045
Symbol
rab5c
Name
(RefSeq) ras-related protein Rab-5C
KO
K07889
Ras-related protein Rab-5C
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04137
Mitophagy - animal
char04144
Endocytosis
char04145
Phagosome
char04148
Efferocytosis
char05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105890789 (rab5c)
04145 Phagosome
105890789 (rab5c)
04137 Mitophagy - animal
105890789 (rab5c)
04148 Efferocytosis
105890789 (rab5c)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
105890789 (rab5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105890789 (rab5c)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105890789 (rab5c)
04031 GTP-binding proteins [BR:
char04031
]
105890789 (rab5c)
Membrane trafficking [BR:
char04131
]
Endocytosis
Rab GTPases and associated proteins
Rab GTPases
105890789 (rab5c)
Endosome - Lysosome transport
105890789 (rab5c)
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
105890789 (rab5c)
Exosomal proteins of other body fluids (saliva and urine)
105890789 (rab5c)
Exosomal proteins of colorectal cancer cells
105890789 (rab5c)
Exosomal proteins of bladder cancer cells
105890789 (rab5c)
GTP-binding proteins [BR:
char04031
]
Small (monomeric) G-proteins
Rab Family
Rab5/17/22/31 [OT]
105890789 (rab5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
GTP_EFTU
MMR_HSR1
Gtr1_RagA
RsgA_GTPase
MCR_beta
AAA_16
BrnT_toxin
Motif
Other DBs
NCBI-GeneID:
105890789
NCBI-ProteinID:
XP_012672323
Ensembl:
ENSCHAG00000004782
UniProt:
A0A6P3VHX4
LinkDB
All DBs
Position
1:complement(9143837..9157871)
Genome browser
AA seq
220 aa
AA seq
DB search
MAGRGGPARTNGAAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQ
RQASPNIVIALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
KLPKNEPQGGAGAGGRARGGVDLQEAAPQSRSSQCCGGGN
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtcgtggaggaccagcacggaccaatggggcggccgcgggcaacaagatatgc
cagttcaaactggttctactaggggagtctgctgtgggcaaatccagcctggtgctgcgc
ttcgtcaaaggacagttccacgagtaccaggagagcaccatcggagctgcgtttctcaca
cagactgtttgtttggatgacacgacggtaaagtttgagatctgggacacggcaggacag
gagcgttatcacagtctggccccaatgtactacagaggcgcgcaagcggccatcgtagtc
tacgacatcaccaacacagacacattcactcgtgcgaagaactgggtgaaggagctgcag
agacaggccagccccaacatagtcattgcgctggcagggaacaaggctgacctcgccaac
aagagagccgtagatttccaggaagcacaagcctatgcagacgacaatagcctgctcttc
atggaaacttctgccaaaactgcgatgaacgtcaatgagattttcatggccatagcaaag
aaactgccgaagaatgagccacagggcggagctggagccggaggacgcgcaaggggcgga
gtcgaccttcaggaggcggcccctcagagcagaagtagccagtgctgcggcggcgggaac
taa
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