Clupea harengus (Atlantic herring): 105890850
Help
Entry
105890850 CDS
T09045
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
char03016
]
105890850 (tarbp1)
03036 Chromosome and associated proteins [BR:
char03036
]
105890850 (tarbp1)
Enzymes [BR:
char01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
105890850 (tarbp1)
Transfer RNA biogenesis [BR:
char03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
105890850 (tarbp1)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
105890850 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
105890850
NCBI-ProteinID:
XP_012672394
Ensembl:
ENSCHAG00000011158
UniProt:
A0A6P3VI74
LinkDB
All DBs
Position
13:4780238..4797806
Genome browser
AA seq
1606 aa
AA seq
DB search
MSSLLINEILTNCTYTDKILESFIWPIDSLPDLERIEAVNILIEACNVRGSEENRDKLSP
GVRALLWDRCIPLLRQISENGLHKNEPGLKALHALCRLLSSCLALLCDSGEVEKLTMITL
PVFQNLEGEDCTQSKGQFDIDVAVEVLAVLLPSLTSDLELLVKLTSCILSAVKVLSDDRV
SKILVRVLFTLLNCVNDRSRTDILQRLWLDLCTWHESEKNMTVTARTLLCLIAVSDYLFT
PSEMSLLHDRHNYLSDPRLSQSFWVIIQSGLTHRDNVARKRALYLLKKCVALSEAENMEF
LASSDGEMCFFRWTPSKSQVLQKFWQDYVLVMETLEENQIHVVRPVLNRLNTLIETTASG
KKDAALVHPSWLLCVYQRMFHSENKAVMKEGVHHLLELELLKCPVFALAFSQFIVGPFMD
VLSDSTLYHRSTNQIIGECPEVGLKLQDFLVNFFGSLPEEHKGSVLLQLIQRMGSRHWCA
VPLLFLSQALARLLPSPLLGPDGLQALREVLRCTMITHQVQLRGAAQCFLLHSALCWTDV
QAVTLEEVFSFLVHFRYDESLCRGTALWKEVCDWFANNKGKFRSAMGKSGTMTPQEAELT
SAATEVEVASLQSYTQHRLEAFLTVPASTEQTDSLPDSGEAELLSLAILLSADVEESPGR
DGGTQETLERLLLPLLDVLRRLSTSLYLPLRKSDKSLQLLLRLLKLRRSRTGTDPETNAD
DCVAATVSALVLTVVEPVQNFIARRLTGELQEVCDVERAGLYLAVLRELLQEFSGVPWYH
GNMQQSFLPGLSAGSLRTLSEPSEQVPSVRGQVQRAVAMAVLSLLCEVARGKVFNASLSL
GSLREHFYRPEHLNQALLKPVATASDVDDSPLLRDWGRVAAHFIGDQWTCLSFLQQVAVP
VTPLEAPGLRAALQAAVEALSLLPSDLVLPVLDFMASVLPQMAVCEENHCVEAVALSWKV
VQGLSSNAHDFWPALQAFVRLAFHRAALDLIPEQAPMLTTTIQQIGCELMELSEVKSGVF
NTLISHCCRTWLPSDPGSEARDDARFSSALTHLDILKEACLHGPVFRRDQRLIQEVQVYV
EQLGDQCAANLAITRDEQFPRVCVLAFLSRLQPSNELHQALLEKLVLQLVEKDKGIAKSK
ARYYSNSLQHRIRNRVWQTLLLLLPKLRREFVVGTLLGYAFEAGFSSNQASVKYLIEWAM
VLMLYHNPSHMDHFWACFSGDQEKTKTSICTFLSVLVHMSILLPRLEDQTGQWRKALEVI
LLWCFSHNFSVRLYALLALKRVWGLEGPRAAAEGVPGGADALGGLATIIQACLNQAEAMQ
NTGNAMKNWSRIQEHFFFSAFHPLRDYSVETIFYSFPRLSELSDDEWIPPWKFEKMAVFS
ADSSLPVRNPVPDLSQMHPGDWIQQDKGELEPEDRWTEVQKKITAWRLSFHEQEPQLAAQ
QRALRLGKLTSALLVVASLIDKPTNLGGLCRTCEIFGASALVLDSLRHVSDKQFQALSVS
SELWLPLLEVKPADLSAFLQGKKTEGYCIVGVEQTANSQSLQDYKFPEKTLLLLGNEKEG
IPANLLQLLDVCVEIPQQGVIRSLNVHVSAALLVWEYTRQHLQPTQ
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctcttttgataaatgaaattttaacgaattgcacctacacagacaagatttta
gagtcgtttatctggccgatagactcgttgccagatttggagaggattgaggctgttaac
atattgattgaggcatgtaatgtgagaggctctgaggagaatcgggataaattatcgcca
ggagtgagagctctcttgtgggataggtgtataccacttttaaggcaaatctcagaaaat
ggtttacataaaaacgagcccggtttgaaggcgcttcatgctctctgtcgcctgcttagc
agctgtttagctctcctctgtgactctggggaggtagagaagctgactatgatcacctta
ccagtatttcaaaacttggaaggggaggattgcacccaaagcaaaggacagtttgacata
gacgtagcagtagaggttctggcggttctgctaccatcattgacgtccgacttggagttg
ttagtaaagttgacatcatgcattctgtcagcagtgaaggtcctgtctgatgaccgagtg
tcaaaaatcctcgtccgtgttttgtttacgcttctcaactgtgttaatgacagaagcaga
acagacattctccagcgcctatggctggatctatgcacttggcacgaaagcgagaagaac
atgaccgtgacagctcggacattattgtgccttattgccgtgtcagactacctcttcaca
cctagcgaaatgtctttacttcatgaccgtcataactacctctcagaccctagattgtca
caatcgttttgggtaattattcagtccggactgacccacagagataacgtggcgcgcaag
cgagccctgtacttgttgaagaaatgcgtcgcgctgtccgaggcggagaacatggagttt
ctcgcatcgtcagacggagagatgtgctttttcagatggacacccagcaaaagtcaagta
ctgcagaaattctggcaggattatgtattggttatggagactctggaagaaaatcagatt
catgtggtgcgtcctgtactgaaccgacttaacacattgattgaaacaacagcaagcggc
aagaaagatgctgccctggtgcacccttcatggttgctgtgtgtgtaccagcgtatgttc
cacagcgagaataaggcagtgatgaaggagggagtgcaccacttgctggagctagagttg
ctgaagtgtccagtcttcgccctggctttctcacagttcattgttggccctttcatggat
gtcttgtctgacagcactctctaccacaggtcaaccaatcaaatcattggggagtgtcct
gaagttgggctgaagcttcaggatttcttggtcaacttctttggcagtttacccgaagaa
cacaaaggctctgtgcttctgcagctgatccagcgaatgggatctcggcactggtgtgca
gtccccctcctcttcctctcccaggccttggctcgactccttcccagcccactactgggc
ccagatgggctacaggcactgagggaggtcctgcgctgcacgatgatcactcaccaggtg
cagctcagaggcgctgctcaatgcttcttgctccacagcgccctctgttggactgatgtg
caagcagtgactctggaggaggtgtttagcttccttgttcactttcgttacgatgagtcg
ctgtgccgaggaacggcactgtggaaagaggtctgtgattggtttgcgaataataaagga
aagttcaggtcagccatggggaaatcaggcactatgacaccacaggaggcagagctgacc
agtgcagccacagaggtggaggtggcctccttgcagagctacacccagcaccgactggag
gctttcctcaccgtaccggccagcacagagcagacagacagcctgccagacagtggagaa
gcagagctcctgtccctggccatcctcctctcagcagacgtggaggagagtccaggcaga
gacggcggtacacaggagactctggagcgcctcctgctccccctactggacgtcctgcgt
cggctcagcaccagcctctacctgcccctgcggaagagtgacaagagcctgcagctgctg
ctgcgccttctcaagctgcggaggagtcgaacaggcacagacccagagaccaacgcagat
gattgtgtagcagccacggtgtcagctctggtgctgaccgtggtggagccagttcagaac
ttcatcgcccgcaggctgactggggagctgcaagaggtgtgtgatgttgagcgcgcgggg
ctgtatctggctgtgctcagagagctgttgcaggagttcagcggggtgccgtggtaccat
ggcaacatgcagcagagcttcctgcccggcctcagcgcgggtagcctgaggaccctgagc
gaaccctctgagcaggtgccctctgtccgtgggcaggtgcagagggccgtggcgatggca
gtgctctctctgctgtgtgaggtggcccgtggcaaagtgtttaatgccagcctgtctcta
ggctccctcagagagcacttctaccgccccgagcacctcaaccaggccttgctaaagccc
gtggccacagcaagtgatgttgatgacagccccctgcttcgagactggggccgtgttgct
gcccatttcattggtgaccagtggacctgtctgagcttcctgcagcaggttgctgtcccc
gtgactcccctggaggcccctgggctccgtgcggccctgcaggctgcggtggaggccctc
tctctgctgcccagtgatctggtgctgcctgtactggacttcatggcctctgtgctgcca
cagatggcggtgtgcgaggagaatcattgtgtggaggcggtggctctcagctggaaggtg
gtgcaggggctaagcagcaacgcccatgacttctggcctgcgctgcaggcgttcgtacgg
ctggccttccacagagccgccttggatctgatcccagaacaggcccccatgctcaccacc
accatacagcagattggctgtgagctgatggagctgtcggaggtcaaatctggcgtgttc
aacaccctcatcagccactgctgccgcacctggctgccttctgacccaggaagtgaagct
cgggatgacgcacggttctccagtgctctcacacacctggacatcctgaaggaggcatgc
ctgcatgggcctgtgtttaggagagaccagaggctgatacaggaagtccaggtttatgtg
gagcagcttggagatcagtgtgccgccaacttggctattaccagagatgagcagttccca
cgtgtttgtgtgctagcctttctcagccgcctgcagccatccaatgagctccaccaggca
ctcctagagaagctggttctgcaattagtggagaaggataaagggatagccaaatcaaaa
gcacgttactatagcaactccttgcaacaccgcataaggaacagggtgtggcagaccctg
ctgttgttgctgcccaaactgagaagggagtttgttgtggggacgctgctgggctacgcc
tttgaggcgggcttcagcagtaaccaggcctccgtgaagtacctcatagagtgggccatg
gtgctcatgctctaccacaacccctcgcatatggaccacttctgggcctgctttagtggt
gaccaagagaagactaagactagtatctgcaccttcctgtcagtgctggtgcacatgagc
atcctgctgccaagactggaggaccagacaggacagtggcgtaaagccctggaggtgata
ctactgtggtgtttcagccataacttcagtgtgcgtctgtacgccctcctggccctgaag
cgggtgtggggactggagggcccacgggccgcggctgaaggggtcccgggcggagcggac
gctctcggagggctggccaccatcatccaggcctgtctgaaccaggccgaggccatgcag
aacacaggaaatgccatgaagaactggtccaggatacaggagcatttcttcttcagtgca
ttccacccacttagggattatagcgtggagaccattttctactcattcccccgcttgtct
gaactgtcagacgatgaatggatacctccgtggaagtttgagaagatggcggtgttctcg
gcagactcctcgctccctgtgaggaacccagtgccagatcttagccagatgcatcctgga
gactggatccagcaggacaaaggtgagctggagccggaggatcgctggacggaggtgcag
aagaagatcaccgcctggaggctgagcttccacgagcaagagccgcagctcgcagcccag
caaagggcactgcgcctgggcaaactcactagtgccctcctggtggtcgcctcgctcatc
gacaagcccaccaacctcggagggctgtgtcgcacctgcgagatcttcggggccagcgct
ctggtgctggacagcctccgccatgtcagtgacaagcagttccaggctctgagcgtctcc
tcggagctgtggctcccgctgctggaggtgaagcctgccgacttatcagccttcctgcag
gggaagaagacagagggctactgcatcgtgggagtggagcagacagccaacagccagagc
ctgcaggactacaagttccccgagaagactctcctgctgctgggtaatgagaaagaaggc
atccctgccaacctactgcagctgctggatgtatgtgtggagattccgcagcagggcgtc
attcgctccctcaacgtgcacgtcagcgccgccctgctggtgtgggagtacacacgccag
cacctgcagcccacccagtga
DBGET
integrated database retrieval system
