Clupea harengus (Atlantic herring): 105890926
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Entry
105890926 CDS
T09045
Symbol
rps27a
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a
KO
K02977
ubiquitin-small subunit ribosomal protein S27Ae
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03010
Ribosome
char04120
Ubiquitin mediated proteolysis
char04137
Mitophagy - animal
char04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
105890926 (rps27a)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105890926 (rps27a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105890926 (rps27a)
04137 Mitophagy - animal
105890926 (rps27a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
char03011
]
105890926 (rps27a)
04121 Ubiquitin system [BR:
char04121
]
105890926 (rps27a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105890926 (rps27a)
Ribosome [BR:
char03011
]
Ribosomal proteins
Eukaryotes
Small subunit
105890926 (rps27a)
Archaea
105890926 (rps27a)
Ubiquitin system [BR:
char04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
105890926 (rps27a)
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
105890926 (rps27a)
Exosomal proteins of colorectal cancer cells
105890926 (rps27a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_S27
Rad60-SLD
Ubiquitin_2
Rad60-SLD_2
DUF2604
Dsc3_N
TBK1_ULD
Ubiquitin_5
OTU1_UBXL
Motif
Other DBs
NCBI-GeneID:
105890926
NCBI-ProteinID:
XP_012672489
Ensembl:
ENSCHAG00000023547
UniProt:
A0A6P3VIL3
LinkDB
All DBs
Position
13:3425378..3427504
Genome browser
AA seq
156 aa
AA seq
DB search
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRE
CPADECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
NT seq
471 nt
NT seq
+upstream
nt +downstream
nt
atgcagattttcgtcaaaacccttacggggaagactataaccctcgaggttgagccttcg
gatactattgaaaatgtcaaggcaaagatccaagacaaagaaggtatccctcctgaccag
cagaggttgatcttcgctggaaaacagcttgaggatggtcgcactctctctgactacaac
attcagaaggagtccacccttcatttggtgctgaggttgcgtggtggtgctaagaagagg
aagaagaagtcttacaccacccccaaaaagaacaagcacaagagaaagaaggtcaagctc
gctgtgctgaagtactacaaggttgacgaaaatggcaagatccaccgtctccgtcgtgag
tgcccagcagatgagtgcggtgctggtgtcttcatggccagccacttcgacagacactac
tgtggaaagtgctgtctcacttactgcttcaacaaacccgaggataagtga
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integrated database retrieval system
