Clupea harengus (Atlantic herring): 105890938
Help
Entry
105890938 CDS
T09045
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105890938 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105890938 (herc4)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
105890938 (herc4)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
HECT type E3
105890938 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
105890938
NCBI-ProteinID:
XP_012672504
Ensembl:
ENSCHAG00000009628
UniProt:
A0A6P3VHR0
LinkDB
All DBs
Position
13:7152193..7165646
Genome browser
AA seq
1063 aa
AA seq
DB search
MLCWGNASYGQLGLGGIEEEIVVEPRSCDFFSGKRLSGVGCGHRHTAFLLDDGTVYTCGC
NDLGQLGHEKPRKKPEQVVALDAQIIVALSCGEAHTLALNDKGQVFAWGLASDGQLGFVN
SEESIRVPRNIKSLSDVCITQVACGYRHSLALAKGGQVFSWGQNKYGQLGLGMVGPSVSS
PQVIQSLLGVPFTHIDAGGAHSFALSFSGAVFGWGRNKFGQLGLNDTNDRYFPALLKTLR
SQRVVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGNVVTQIA
CGRQHTLAFISTSGKINSFGLGGNGQLGTRSTCNRKSPALVKGPWKALNGPDPDDMHSGP
EHGHYVKRIFAGGDQSFSHFSTDQVRPWWRVHDNQNDLAPDDFRVPDPRGHIHVLNANLI
QKWLSHAHGRLPPEISNEIDVVFSSASCLNGSFLSKSHPDHYNTSSKCSGVDMNTARVLL
HRVIQPDYPQISQLVCRSLEKILAPRLISAPPDIEALRLYVTLPECPLLHNPSNYASLTI
PLASATVSLKEAAHTVLCNWWCQLEPPMFQRRVELYKEVVLYLLGMQKAGRPPAELKVLT
CFLHHSLKLLGLLHAVNETAGQIIQYDKFYIHELDELIDIRNDYINWIQQQVYSSHGDSF
PVTMCKYPFVFDAQAKTTLLQTDAVIQMQIAVDQAQRQNFSSLFLPVVESVNPCLILIVR
RENIVGDAMEVLRKSKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMRELLDPRYGMFR
YHEESRLIWFANKTFEDIDLFHLIGAICGLAIYNLTIVELNFPLVLYKKLLQRLPTLDDL
KEMMPDVARSLQQLLDYTEDDIEDTFCLNFTVTEDNYGATEVLELIPNGADINVNKSNRQ
EFVNAYVDYIFNKSVAPLFEAFAAGFHKVCGGKVLLLFQPSELQAMVIGNTNYDWKELEK
NTEYRGEYWADNPTIKAFWEVFHELSLEKKKLFLLFLTGSDRIPILGMRSLKLVIQPTGG
GEQYLPVAHTCFNLLDLPKYTSAETLRSKLLEAIEHNQGFNLA
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctgggggaacgcctcctatggccagctgggcctgggcggtattgaggaggag
atagtggtggagccacgcagctgcgacttcttctcggggaagcggttgtctggtgtgggc
tgtggccacagacacacggccttcctgctggatgacggcacggtgtacacctgtggctgc
aatgacctcggccaactgggccacgagaagccccgcaagaaaccagaacaggttgtggcc
ctagatgctcagatcatcgtggcgctgtcatgcggtgaggcccacactctcgctctcaat
gacaagggacaggtctttgcctggggactggcgtcagacggccaactgggctttgtcaac
tctgaagaatctatccgcgtaccaagaaacatcaagagtttatcagatgtctgcattacg
caggtagcctgtggataccggcattctcttgcccttgccaaaggaggccaggtcttctcc
tggggccagaacaagtacgggcaactgggcctgggtatggtggggccgtctgtctcatcc
ccccaggtcatccagtccctgctgggtgtccccttcacccacattgacgctggaggggcg
cacagctttgccctctcgttctctggggcagtatttggttggggccgcaacaagtttggc
caactaggactgaatgacactaatgaccggtattttccggctctgttaaagacactgcgg
tcccagagagtggtgtacatctgctgtggagaggaccacactgccgcacttacaaaggag
ggaggggtgttcacctttggagcaggaggatatgggcagctaggccacaacagcaccagc
catgagatcaatccccgcaaggtgttcgagctcatgggaaatgtagtcacacaaatcgct
tgtggcagacagcacacattggccttcatctccacctcagggaagatcaactcctttggg
ctggggggcaacgggcagctagggacgcgctccacttgtaacaggaagagccctgcgctg
gtcaagggcccctggaaggccctcaacggccccgacccagacgacatgcactccggccct
gagcatggacactatgtgaagcggatctttgccggaggggaccagagtttttcccacttt
agtacagaccaggtgcgtccctggtggagagtgcatgacaatcagaacgaccttgcccca
gacgatttccgagtgcctgatcctcgaggtcacattcacgtgctgaatgccaacctcatc
cagaagtggctgagccatgcgcatggacgactgccacctgaaatctcgaatgagattgat
gttgtgttctcctcagcgagttgcctcaatgggagcttcttgtcaaaaagccacccagac
cactacaacaccagtagtaagtgctcaggggtggatatgaacactgctcgcgtacttttg
cacagagtgatccaaccagactatccacagatctcacagctggtatgcaggagtctggag
aagatcctggcccctagactcatctccgctcccccggacatcgaggccctgaggctctat
gtcacgctgcccgagtgccctctactccacaaccccagcaactacgcatcactgaccatc
cccctggccagtgccaccgtgagcctgaaggaggccgcccacacagttctctgtaactgg
tggtgtcagctggagccacccatgttccagcgcagggtggagctgtataaggaggtggtg
ctgtacctgctgggcatgcagaaggcggggcggcccccggctgagctgaaggtgctcacc
tgcttcctgcaccattcgctcaagctccttggcctcctgcacgccgttaacgagacagcc
ggacaaatcatccagtatgacaagttctacatccacgaactggatgagctcatcgacatc
cggaatgactacatcaactggatccagcagcaggtgtactcctctcatggagacagcttc
cccgtgacgatgtgcaaatacccgtttgtgttcgacgctcaggccaagaccactctctta
cagacagacgctgtcatccaaatgcagatagccgtagaccaggcgcagcggcagaacttt
agctccctcttcctccctgtagtggagtcggtgaacccctgcctcattctcatcgtgcgc
cgtgagaacatcgtgggcgacgccatggaggtgctgaggaagtccaaaaacgttgactac
aagaagcccctcaaggtgatctttgtaggggaggaggcggtggatgctggaggtgtgagg
aaggagtttttcctcctcatcatgagggagctgctggaccccagatacggaatgttccgc
taccacgaggaatcccgccttatctggttcgccaacaagacgtttgaagacatcgacctg
ttccacctgatcggggccatctgtgggctggctatttataacctgaccatagtagagctc
aacttccccttggtgctctacaagaagctgctccagaggctccccaccctggacgacttg
aaagagatgatgcccgatgtggcgaggagtctgcagcagctgctcgactacactgaggat
gacattgaggacaccttctgtctcaacttcacagtcacagaggacaactatggagcaaca
gaggtgttggagttaatccctaatggagccgatataaatgtgaataagtccaacagacag
gagtttgtgaacgcgtatgtggactacatcttcaataagtctgtggcgccgttgtttgaa
gctttcgctgctgggttccacaaagtctgtggtggcaaggtgctgcttctgttccagccc
agcgagcttcaggctatggtcatcgggaacactaactatgactggaaagagctagagaag
aacacagagtatagaggggagtattgggctgataatcccaccatcaaggccttctgggaa
gtttttcatgagctctctttggagaagaagaagctatttcttttgttcctcacaggaagt
gaccgtatccccatcctgggcatgaggagcttgaagctggtgatccagcccacaggcgga
ggcgagcagtacctgcccgtggcccacacctgcttcaatctgctggacctgcccaagtac
acaagcgcagagacgctgcgcagcaaactgctggaggccattgagcacaaccagggcttc
aacctggcctga
DBGET
integrated database retrieval system
