Clupea harengus (Atlantic herring): 105890945
Help
Entry
105890945 CDS
T09045
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04517
IgSF CAM signaling
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
105890945
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105890945
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
char04812
]
105890945
Cytoskeleton proteins [BR:
char04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
105890945
Intermediate filaments
Intermediate filament-binding proteins
105890945
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
PH_11
Motif
Other DBs
NCBI-GeneID:
105890945
NCBI-ProteinID:
XP_031434984
Ensembl:
ENSCHAG00000020514
UniProt:
A0A6P8G6H9
LinkDB
All DBs
Position
13
Genome browser
AA seq
2361 aa
AA seq
DB search
MELQRATSMPGPLSPGPLSPGHVSPGPLSPGPLSPGAGPSSPLAGPSGASPGYSAQAAYN
YNQLEGRFKQLQDEREAVQKKTFTKWVNSHLSRMSSRITDLYMDLRDGRMLIKLLEVLSG
EKLPKPTKGRMRIHCLENVDKALQFLKEQKVHLENMGSHDIVDGNHRLTLGLIWTIILRF
QIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNALIHKHRP
DLIDFDKLKKSNAHHNLQNAFNLAENHLGLTMLLDPEDISVDHPDEKSIITYVVTYYHYF
SKMKALKVEGKRIGKVLENAIEAEKMVEKYESLASDLLEWIEQTIIILNNRKFANSLVGV
QQQLQAFNTYRTAEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWE
RLEKAEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAV
EAATKKHEAIETDISAYEERVQAVLLVARELEKEIYHDNKRITARKDNVVRLWEYLLELL
RARRQRLEMNLGLQKVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLMQKHSLVESDI
AIRADRVKAVNSNAQRFILDTEGYKPCDPQVIRDRVSHMEFCYQELIQLAAERRARLEES
RRLWKFFWEMAEEEGWIRETEQIMSSDDCGKDLTSVVRLLSKHKALEDEMNGRAGRLQQT
VKQGQELVAASHFGSDKISERIDDVKEQWAALERLAAERKNRLQEACGMHQFQADADDMD
AWMLDVLRIVSSADVGHDEFSTQALVKKHKDVAEEIASYRPVLDALHDQANILPPQHAES
NEVKGRLAGIDERYAEVAELTRLRKQALQDALALYKMFSEVDACEVWIDEKELWLNSMQI
PEKLEDLEVIQHRFESLEPEMNNQASRVAVVNQIARQLIHSGHPSEKEIKAKQDKLNTRW
SQFRDLVDQKKDSLNSALGVQNYHLECNETKSWIREKTKVIESTQDLGNDLAGVMSLQRK
LTGMERDLAAIEDKLGDLGKEAERLADEHPDQAPGIKGSLGEINEVWDDMKGTLRAREES
LGESSKLQQFLRDLDDFQAWLSRTQTAIASDDIPNTLAEAEKLLTQHEGIKNEIHNYEED
YQKMRDMGEMVTQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNILSQSHAYQLFLRD
TKQAEAFLNNQEYVLAHTEMPTTLEAAEGAIKKQEDFMTTMDANEEKINAVVETGRRLVS
DGNTSADRIQEKVDTIDQRHKKNREAASALLAKLKDNRDLQRFLQDCQELSLWSSEKMLT
AQDMSYDEARNLHSKWLKHQAFMAELQSNKEWLDKIEKDGTALVAEKPETEPVVKEKLGM
LKKQWADLESTTQTKAQCLFDANKAELFTQSCADLDKWLVGLEGQIQSDDYGKDLTSVNI
LLKKQQMLESQVDVRQKEVEELRSQAQRLRQEGKDSDEVDGRRRGVEQKFQGLLDPLNQR
KSNLMASREIHQFNRDVEDEILWVEERMPLAASTDHGHNLQTVQLLIKKNQTLQKEIQGH
QPRYDDIFERSQIIVKPDSPNGDVIRQRLADLQRLWALIIEETGKRHGRLEEAHRAQQYY
FDAAEAEAWMSEQELYMMSEEKAKDEQCSVAMLKKHQIVEQAVEDYAETVHQLSKTSRGL
VAAGHPESERISMRQSQVDKLYAGLKDLSEERRAKLDERSRLFQLNREVDDLEQWIAERE
VVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNQMADELINSGHSDAATIAE
WKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEVLGRILDKHKKLPEELGRDQNT
VETLQRMHTTFEHDIQALGTQVKTLQEDAARLQSAYAGDKAEDIARREGEVLEAWRSLLE
ACEGRRVRLLDTSDKFRFFSMVRDLMLWMEDVIRLIDAQEKPRDVSSVELLMNNHQGIKA
EIDARNDSFTTCIEMGKALLARKHYSSEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLE
VHQFSRDAGVAEAWLLGQEPYLGSREIGLSVDDVEKLIKRHEAFEKSAATWEERFAALER
LTTMELLEVRRMQEEEEKKRQPPPEEAQPTEAQPTEAESPQQKEGEQVSQNGLPTEQDSP
REAAGGSDAVNGVVEPSPGPSPTASRKAKPSQAATLPTKPQETATQMEGFLHRKHEWEGH
NKKASNRSWHNVYCVINHQEIGFYKDSKSASQGIPYHSEIPISLREAVCEVALDYKKKKH
VFKLRIPDGNEYLFQAKDDEEMNSWIQAISSATPSDRSDVAPSSHSTPASSRAHTLPTTD
SSPGKRDKDREKRFSLFSKKK
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atggagctccaaagggcaaccagcatgcctgggcccctgtcacctggccctttgtccccc
ggacatgtttccccggggcctctctctcccgggcccctgtcccccggggccggcccgtcc
tctccgctcgctggccccagtggtgccagccctggctactccgctcaggctgcctacaac
tacaaccagctggaggggcgcttcaaacagctgcaagatgagcgcgaggcggtgcagaag
aagactttcaccaaatgggtgaactcccacctgtcgcgcatgtcctcccgcatcaccgac
ctctacatggacctgagggacgggcgcatgctcatcaagctgctggaggtgctctccgga
gagaagctgccgaaacccaccaaagggcggatgcggatccactgtctggagaacgtggac
aaggccctgcagttcctcaaagaacagaaggttcacctggagaacatgggctcccacgac
atcgtcgacggcaaccacagactcaccctgggtctcatctggaccataatcctccgcttc
cagatccaggacatcagcgtggagactgaggacaacaaagagaagaagtctgccaaggac
gccctgctgttgtggtgtcagatgaagaccgctggatacccaaacgtcaacatccacaat
ttcagcaccagctggagagatggcatggctttcaacgccctcatccacaaacacaggccc
gacctgattgactttgacaaactgaagaagtccaacgctcatcacaatctgcagaacgcc
ttcaacctggccgagaatcacctgggcctcaccatgctcctggaccccgaggatatcagt
gtggatcacccagacgagaagtctatcatcacctatgtggtcacgtactaccactacttc
tccaagatgaaggccctgaaggtggaaggcaagcgtattggaaaggtgctggagaacgcc
attgaggcggagaaaatggtcgagaagtacgagtctctggcctcagacctgctggagtgg
atcgagcagacaatcattatcctcaacaatcgcaagtttgccaactctctggtgggcgtc
cagcagcagctccaggccttcaacacctaccgcaccgctgagaagcccccaaagtttaca
gagaagggcaacctggaagtgcttctcttcacaatccagagcaagatgcgcgccaacaat
cagaaagtctacatgccacgagagggcaaactcatatcagacatcaacaaggcctgggag
cgtctggagaaggccgagcatgagcgggagctggctctgaggacggagctcattcgtcag
gagaaactggagcagctcgcccgccgcttcgaccgcaaggcagccatgagagagacctgg
ctgagtgagaaccagcgcctcgtctcacaggacaactttggctttgacctgcaggccgtg
gaggccgccaccaagaagcacgaggccatcgagacggacatctcggcctacgaggagcgc
gtgcaggcggtgctcttggtggccagggagctggagaaggagatctaccacgacaacaag
cgcatcacggcgcgcaaggacaacgtggtgcggctgtgggagtacctgctggagctgctc
cgggcccgcaggcagaggctggagatgaacctgggcctgcagaaggtcttccaggagatg
ctctacatcatggactggatggacgagatgaagatgctgctgctgtcccaggactatggg
aagcacctgctgggtgtggaggacctgatgcagaagcactcgctggttgagtccgacatc
gccatccgggccgaccgcgtgaaggctgttaactccaacgcacagaggttcatcctggac
actgagggatacaaaccatgcgacccacaagttatccgagaccgcgtgtcccacatggag
ttctgctaccaggagctgattcagctggcggcagagcgccgtgcccgcctggaggagtct
cgacgcctgtggaagttcttctgggagatggcggaggaggagggctggatccgcgagacg
gagcagatcatgtcgtcggacgactgcggcaaggacctgacttccgtggtgcgtctgctg
agcaagcacaaggctctggaggacgagatgaacggccgcgcgggccgcctgcagcagacg
gtgaaacagggccaggagctggtggccgccagccattttggctcagacaagatcagtgag
cgcatcgacgacgtgaaggagcagtgggccgcgctggagcggctggccgccgaacgcaag
aaccgcctgcaggaggcctgcggcatgcaccagttccaggcggacgccgacgacatggac
gcctggatgctcgacgtgctgcgcatcgtgtccagcgccgacgtgggccacgacgagttc
tccacgcaggcgctcgtcaagaagcacaaggacgtggccgaggagatcgccagctaccgg
cccgtgctggacgccctgcacgaccaggccaatatcctgccgccgcagcacgccgagtcc
aacgaggttaaaggtcgcctggcgggcatcgatgagcgatatgccgaggtggcggagctg
acaaggctgcgcaagcaggcgctgcaggacgcactggccctctataagatgttcagtgag
gtggatgcctgcgaggtgtggatcgacgagaaggagctgtggctcaacagcatgcagatc
cccgagaagctggaggacctggaggtgatccagcacaggttcgagagcctggagccagag
atgaacaaccaggcctctcgcgtggcggtggttaaccagattgccagacagctgatccac
agtggccacccgagcgagaaggagatcaaagccaagcaggataaactcaacaccaggtgg
agccagttccgagacctggtggaccagaagaaggactcgctcaactctgcgctgggtgtg
cagaactaccacctggagtgcaacgagaccaagtcgtggatccgcgagaagaccaaggtg
atcgagtccactcaggacctgggcaacgacctggccggcgtgatgtcgctgcagcgtaag
ctgacgggcatggagcgcgacctggccgccatcgaggacaagctgggcgacctgggcaag
gaagccgagcggctggcggacgagcaccccgaccaggcgccgggcatcaagggcagcctg
ggtgagatcaacgaggtgtgggacgacatgaagggcacgctgcgtgcccgtgaggagtcg
ctgggcgagtcgtccaagctgcagcagttcctgcgcgacctggacgacttccaggcgtgg
ctgtcgcgcacgcagacggccatcgcgtccgacgacattcccaacaccctcgccgaggcc
gagaagctgctgacgcagcacgagggcatcaagaacgagatccacaactacgaggaggac
taccagaagatgcgcgacatgggcgagatggtgacgcagggccagacggacgcccagtac
atgttcctcaggcagaggctgcaggcgctcgacaccggctggaacgagctgcacaagatg
tgggagaaccggcagaacatcctgtcccagtcccacgcctaccagctgttcctcagggac
accaagcaggccgaggccttcctcaacaaccaggagtatgtgttggcccacacagagatg
cccaccactctggaggccgccgagggagccatcaagaagcaggaggacttcatgaccacc
atggacgccaacgaggagaagatcaacgcggtggtggagacgggccgccggctggtgagc
gacggcaacaccagcgccgaccgcatccaagagaaggtggacaccatcgaccagaggcac
aagaagaaccgtgaggcagccagtgcgctcctggcgaaactcaaggacaacagagacctc
cagaggttcctgcaggactgccaggagctgtccttgtggagcagtgagaagatgctcacg
gcacaagacatgtcgtacgatgaggcgcgcaacctgcacagcaagtggctcaagcaccag
gccttcatggctgagctgcagtccaacaaggagtggctggacaagatcgagaaggacggg
actgctctggtggcggagaagccagagacggagccggtggtgaaggagaagctgggcatg
ctgaagaagcagtgggccgacctggagtccaccacgcagaccaaagcccagtgcctgttc
gacgccaacaaggctgagctgttcacgcagagctgcgccgacctggacaagtggctggtg
ggcctggaggggcagatccagtcggacgactacggcaaggacctgaccagcgtcaacatc
ctgctcaagaaacaacagatgctggagagccaggtggacgtgcgtcagaaggaggtggag
gagctgcgctcacaggcccagaggctgcgtcaggagggcaaggactcggacgaggtggac
gggcggcggcgcggcgtggagcagaagttccagggcctgctggacccgctgaaccagcgc
aagagcaacctgatggcctcccgcgagatccaccagttcaaccgcgacgtggaggatgag
attctctgggttgaggagagaatgccactggccgcgtccacagatcacggccacaactta
caaaccgtccagcttctcatcaagaagaaccagaccctccagaaggagatccagggccac
cagccacgctacgacgacatcttcgagcgcagccagatcatcgtgaagccggatagcccc
aacggggacgtgatccggcagcgtctggccgacctgcagcgcctgtgggcgctgatcata
gaggagacgggcaagaggcacgggcgcctggaggaggcccaccgggcccagcagtactac
ttcgacgccgcagaggccgaggcctggatgagcgagcaggagctctacatgatgtcagag
gagaaggccaaggacgagcagtgttcagtggccatgctgaagaagcaccagattgtggag
caggcggtggaggactacgccgagacggtgcaccagctctccaagaccagcaggggactg
gtggcagccggacacccggagagtgagcggatcagcatgaggcagtcgcaggtggataag
ctgtacgcgggcctgaaggacctgtcggaggagaggagggccaaactggacgagaggtcc
cggctcttccagctcaaccgcgaggtggacgacctggagcagtggatcgccgagcgggag
gtggtggccgggtcgcatgagcttggacaagactacgaacacgtgaccatgctgcaggag
cgtttccgggagtttgcccgcgacaccggaaacattgggcaggagcgcgtggacaccgtc
aaccagatggcagacgagctcatcaactcgggccactcggacgcggccaccatcgctgag
tggaaagacgggctgaacgaggcgtgggcagacctgctggagctgatcgacacacgtacg
cagattctggccgcctcctacgagctgcacaagttctaccatgacgccaaggaggtgctg
ggacgcatcctggacaaacacaagaagcttccggaagagctcggccgcgaccagaacaca
gtggagacactgcagaggatgcacacgaccttcgagcatgacatccaggccctagggact
caggtgaagacgcttcaggaagacgcggcaaggctgcagtcggcgtacgcaggcgacaag
gcggaggacattgcgcggcgtgagggtgaggtgcttgaggcgtggcggagccttctggaa
gcctgcgaggggcgccgcgtgcgtctgctggacaccagcgacaagttccgcttcttcagc
atggtgcgcgacctcatgctgtggatggaagacgtcattcgcctcatcgacgcccaggag
aagcccagggatgtgtcgtctgtggagctcctgatgaacaaccaccagggcatcaaagct
gagattgacgcccgcaacgacagcttcacaacctgcatcgagatgggcaaagccctgctg
gcacggaagcactattcatcagaggagattaaagaaaagttgctacagctgacggataag
aggaaagacatgattgacaagtgggaggacagatgggagtggctgagactggtgctggag
gtgcaccagttctcacgtgacgcgggggtggcggaggcttggctgctgggacaggagccc
tacctgggcagccgtgagataggcctgagcgtggacgacgtggagaagctcatcaagcgc
cacgaggccttcgagaagtctgctgccacctgggaggagcgcttcgccgccctggagaga
ttaactacaatggagttattggaagtgagaagaatgcaagaggaagaggaaaagaagagg
cagcctccacctgaagaggcccaacccacagaggcccaacccacagaggcagaatccccc
cagcagaaggagggtgaacaggtgtctcagaacgggttgccaacggagcaggactctccc
cgggaggctgcgggaggaagtgatgccgttaacggagtggtggagcccagcccaggcccc
tctcctactgcgagccggaaggccaaacccagccaggcggccaccctgccgaccaagccc
caggagacggccacccagatggaaggcttcctgcatcgcaaacacgagtgggagggccac
aacaagaaagcttcaaacaggtcctggcacaatgtgtactgtgtgataaaccatcaggag
ataggcttctataaggacagcaagagtgccagccagggcatcccttaccacagcgagatc
cccatcagtctaagggaagctgtttgcgaggtggcgttggactacaagaagaagaaacac
gtcttcaaactcagaattccagatggaaacgagtatctcttccaagccaaagatgatgag
gagatgaattcgtggatccaggcgatctccagcgccacgccatccgaccgctccgacgtg
gcccccagcagccacagcactcccgcctccagccgcgcacacaccctgcccaccaccgat
tccagccccggcaagcgcgataaggacagggagaagcgattcagcctcttcagcaaaaag
aagtag
DBGET
integrated database retrieval system
