Clupea harengus (Atlantic herring): 105890946
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Entry
105890946 CDS
T09045
Symbol
cldn5b
Name
(RefSeq) claudin-5b
KO
K06087
claudin
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03272
Virion - Hepatitis viruses
char04382
Cornified envelope formation
char04514
Cell adhesion molecule (CAM) interaction
char04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
105890946 (cldn5b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
105890946 (cldn5b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
105890946 (cldn5b)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105890946 (cldn5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
char03037
]
105890946 (cldn5b)
04147 Exosome [BR:
char04147
]
105890946 (cldn5b)
Cilium and associated proteins [BR:
char03037
]
Other cilia and associated proteins
Stereociliary proteins
105890946 (cldn5b)
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of ovarian cancer cells
105890946 (cldn5b)
Exosomal proteins of colorectal cancer cells
105890946 (cldn5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PMP22_Claudin
Claudin_2
L_HMGIC_fpl
MFS_MOT1
CdpA_N
DUF1634
DUF4064
Motif
Other DBs
NCBI-GeneID:
105890946
NCBI-ProteinID:
XP_012672517
Ensembl:
ENSCHAG00000009062
UniProt:
A0A6P3VIM8
LinkDB
All DBs
Position
12:complement(11088177..11089697)
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AA seq
215 aa
AA seq
DB search
MLSACLELLGLGFCVSGNLLVMVACGLPMWKVSAFIESNIVVAQTIWDGLWMSCVVQSTG
QMQCKVHDSVLALNKDLQMGRALTVISAVLGVMGLIFAIAGAQCTNCLKTENIKAKVVNA
GGVIYIISGLFVLIPLCWMANNIISDFYSPQVPPAKKREIGAALYIGWAGAGLLLAGGTL
LCCSCPHRLKGSYPIKYAPTKSVTQNGDYDKRNYV
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgctttctgcctgtttggaattgctcggcctggggttttgcgtgtctggtaatctgctg
gtgatggtggcttgcggcttgcccatgtggaaagtgtccgctttcatagagagcaacatc
gttgtggcgcagactatctgggacggactgtggatgtcctgcgtggttcagagcacaggg
cagatgcagtgcaaggtacacgattccgtcctggcattgaacaaggacctgcagatgggc
agagctctcacggtcatctccgctgtcttgggcgtgatggggctcatcttcgccatcgcc
ggtgcacagtgcaccaactgtctcaaaaccgagaacattaaggcgaaggtggtgaacgcc
ggcggggtgatctacatcatcagcggcttatttgtcctgatccctctctgctggatggca
aataacatcatctcggacttctacagcccgcaggtccccccagccaagaaacgagagatt
ggggctgcgctgtacatcgggtgggcgggcgccgggcttctgctagctggaggcacctta
ctgtgctgctcctgtccccatcgtttaaagggttcatatcctataaaatacgccccaaca
aaaagcgtcactcagaacggagactacgacaaacgaaattacgtgtaa
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