Clupea harengus (Atlantic herring): 105890956 Help Entry 105890956         CDS       T09045                                  Symbol thbs2a Name (RefSeq) thrombospondin-2 isoform X1   KO K04659   thrombospondin 2/3/4/5 Organism char  Clupea harengus (Atlantic herring) Pathway char04145   Phagosome char04510   Focal adhesion char04512   ECM-receptor interaction char04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:char00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     105890956 (thbs2a)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     105890956 (thbs2a)   09144 Cellular community - eukaryotes    04510 Focal adhesion     105890956 (thbs2a)   09142 Cell motility    04820 Cytoskeleton in muscle cells     105890956 (thbs2a)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:char04131]     105890956 (thbs2a)   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:char04147]     105890956 (thbs2a)    00536 Glycosaminoglycan binding proteins [BR:char00536]     105890956 (thbs2a) Membrane trafficking [BR:char04131]  Endocytosis   Phagocytosis    Opsonins     105890956 (thbs2a) Exosome [BR:char04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    105890956 (thbs2a)   Exosomal proteins of colorectal cancer cells    105890956 (thbs2a)   Exosomal proteins of bladder cancer cells    105890956 (thbs2a) Glycosaminoglycan binding proteins [BR:char00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    105890956 (thbs2a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 TSP1_CFP_C TSP1_ADAMTS Laminin_G_3 TSP1_CCN cEGF EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  105890956 NCBI-ProteinID:  XP_012672533 Ensembl:  ENSCHAG00000014817 UniProt:  A0A6P3VIW2 LinkDB All DBs Position 13:complement(4940437..4961871) Genome browser AA seq 1184 aa AA seqDB search MILRGLCLLPVLLICAPALPQDGEVEDESVFDLFAISQINRKTIGAKLFKGHDWDSPAYR FIRFDQLPAVRTPILRQLLKQIQNNEGFVFEATMRQDRASRGTLVGLESSNGRRQFEIVS NGRANTLDLVYWVEGSQNVVSFEDVDLSDSQWKNITLHVHGENAHLYVGCTLIDSFILDE PFYEHLQPEGSRMYVAKGSIRENHFRGLLQNVKFLFDTTLDDVLRNKGCEITKPVEANTV TGSAEIVDVSPVITTNFIGQKTEKLSSALCERSCEELSTLFQELKGLRIIVGNLMDGLQK VTEENTAMKEVLGKMKNSKEKHMCWQDGRLFEDKEDWVVDSCTKCTCQESKIVCHQITCP AVACASPTFLDGECCPVCLPMDSEDGWSPWSEWTECTVTCGTGTQQRGRSCDATSNPCSG PSIQTRKCSLAKCDSRVRQDGGWSLWSPWSSCSVTCGEGQITRIRHCNAPVPQLGGKDCE GSGRETQRCEAKPCPIDGGWGPWSPWAVCSATCGGGNRGRTRVCNSPQPQYGGRRCQGEF RDSEACNKQDCPIDGCLSNPCFGGVDCNSGTDGSWECGPCPVGFRGNGTHCTDVNECDMV ADVCFRAGGAQRCINTNPGFHCLPCPPRYKGTQPFGMGIEAAKNNKQVCEPENPCLDRTH SCHRHAECIYLSHFSNPMYKCECKIGFAGDGILCGEDSDLDGWPNKNLVCGANATYHCKK DNCPNLPNSGQEDFDKDGQGDACDKDDDNDGILDERDNCPLLYNPRQFDNDKDDVGDRCD NCPYEHNPAQIDTDHNGEGDACAVDIDGDEILNEQDNCAYVYNTDQKDTDMDGVGDQCDN CPLLHNPDQADTDNDQVGDSCDNNQDIDEDGHQNNLDNCPYVANANQADHDKDGKGDACD FDDDNDGVPDDKDNCRLVPNKDQLDSDGDGRGDACKDDFDNDSIPDIFDVCPENDGISIT DFRKFQMVHLDPKGTTQIDPNWVVRHQGKELVQTANSDPGIAVGFDEFNAVDFSGTFYVN TDRDDDYAGFVFGYQSSGRFYVVMWKQITQTYWEDKPSKAFGISGVSLKVVNSTTGTGEH LRNALWHTGDTGGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGKQIMADS GPTYDKTFAGGRLGLFVFSQELVFFSDLKYECRDNPDLPSVFFR NT seq 3555 nt NT seq  +upstreamnt  +downstreamnt atgatacttagaggtctgtgcttactaccagtgctactcatttgcgctccagcgctacct caagatggggaagtggaggacgagtcggtctttgacctgtttgctatcagtcaaatcaac cgcaaaactatcggagctaagctcttcaagggtcacgactgggactctcctgcataccgc ttcatccgcttcgaccagctgcccgctgttcgcacaccgatacttcggcagctattgaag cagatccagaataatgagggcttcgtattcgaggccaccatgcgccaggaccgcgcctct agggggacgctggtcggactggagagttcaaacggccgccgccagttcgagatcgtgtcc aacggtcgcgccaacacactggacttagtgtactgggtggaaggctctcagaatgtggta tcgtttgaggacgtggacttgtcggattctcagtggaaaaacatcacgctccacgtacat ggggagaacgcgcacctgtatgtgggctgcaccctaatcgatagtttcatcctggacgag ccgttctatgagcaccttcaaccagagggcagccggatgtatgtggccaaaggttcgatc cgcgaaaatcacttcaggggattgcttcagaatgtgaaattcctctttgacacaaccttg gatgacgtcctgaggaacaagggctgtgagatcacaaagccagtcgaggcgaacacagtg acggggagtgccgagatcgtggacgtgagtcccgtcatcaccaccaacttcatcggccag aagacggagaagctgagctctgccttgtgtgagcgctcctgtgaggagctcagcaccctc ttccaggagctcaagggcctccgcatcatcgttggcaacctcatggacggcctgcagaaa gtcactgaggaaaacacagccatgaaggaagtgctgggcaagatgaagaactccaaagag aagcacatgtgctggcaggacggccgtctgtttgaggataaggaggactgggtcgtggac agctgcactaagtgtacctgccaggagtcaaagatagtgtgtcaccagatcacatgtcca gctgtggcctgcgcaagcccaaccttcctggatggagaatgctgtcctgtgtgtttgccg atggacagtgaggacggctggtccccctggtctgagtggactgagtgcacagtgacctgt gggacgggcacccagcagagagggcgctcctgcgacgccaccagtaacccctgctctgga ccctccatccagacccgcaagtgcagcctggccaagtgtgacagccgtgtgcgacaggat ggtggctggagtttgtggtccccttggtcctcgtgctccgtcacctgcggcgaggggcag attacccgcatccgccactgtaacgctcccgtgccacagctggggggcaaagactgcgag ggcagcggccgtgagacgcagcgctgtgaagccaagccctgccccattgatggtggttgg ggcccatggtctccatgggcggtctgctcggcgacctgcggagggggcaacaggggccgc actcgcgtgtgcaacagcccccagccccagtatggaggcaggaggtgtcagggcgagttt agagacagtgaggcctgcaacaaacaagactgccccattgatggctgtctctccaaccca tgctttggcggagtggactgcaacagtggaaccgatggctcctgggagtgtggaccatgc cccgtgggtttccgtggtaacggaactcactgtacagatgtcaatgagtgtgacatggtg gctgacgtctgcttcagggcgggtggggcccagcgctgcatcaacacaaacccagggttc cactgcttgccctgtccgcccagatacaagggcactcaacccttcggcatgggaatagag gcagccaagaataacaaacaggtatgtgaaccagagaacccctgcctggacagaacccac agctgccacaggcacgcagagtgcatctacctcagccacttcagcaaccccatgtacaag tgcgagtgtaagattggctttgctggcgacggcatcctctgcggagaagactccgacctg gacggctggcccaataagaaccttgtgtgtggcgctaacgctacttaccactgcaagaag gacaactgccccaacctgccaaactcaggacaggaggactttgacaaagacggacaggga gatgcctgtgacaaggatgatgacaatgatggaatcctggatgagagggacaactgcccc ctcctgtacaaccccaggcagtttgacaatgacaaagacgacgtgggtgaccgctgtgac aactgcccctacgaacacaaccccgctcagatcgacacagaccacaacggggagggcgac gcctgtgccgtggacatcgacggagatgagattctgaacgagcaggataactgcgcgtac gtctacaacaccgaccagaaggacaccgacatggacggagtgggagaccagtgtgacaac tgtcccctgttgcacaaccctgaccaggctgatacagataatgatcaggttggagattcg tgcgacaataaccaggacatagatgaggacggacatcagaacaacctggacaactgtccc tacgtagccaatgccaatcaggccgaccacgacaaggacggcaaaggagatgcctgcgac ttcgatgacgacaacgacggcgttcctgatgacaaggacaactgcagactggtacccaac aaagaccagctggattctgacggagatggaagaggtgacgcatgcaaagacgactttgac aacgacagcatccccgacatctttgacgtgtgccccgagaatgacggcatcagtatcacc gactttagaaagttccagatggtgcatttggatcctaaaggaaccacgcaaatcgatccc aactgggtggtaagacaccagggcaaggaactcgtgcagactgccaattctgaccctggt attgcagtaggctttgatgagttcaatgccgtggacttcagcgggacgttctacgtcaac acggacagggacgacgactacgcagggtttgtgttcggctaccagtccagcgggcgcttt tacgtggtcatgtggaagcagatcacgcagacgtactgggaggacaagccctccaaggct ttcgggatctcaggggtctcgctaaaggtggtcaactccaccacaggtaccggtgaacac ctgaggaacgccctatggcacaccggggacacaggcggacaggtacgcaccctgtggcac gacccaaagaacatcggctggaaagactacacggcctacagatggcatctcatccataga ccaaagactggcttcatcagggtggtggtttatgaaggtaaacagatcatggccgattca ggacctacatatgacaagacttttgcgggtggacggttaggtctgtttgtcttttcccaa gagctggtcttcttctccgacctcaaatacgagtgccgagataacccagacttaccctca gtgttcttcagataa

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