Clupea harengus (Atlantic herring): 105890994 Help Entry 105890994         CDS       T09045                                  Symbol actn1 Name (RefSeq) alpha-actinin-1 isoform X1   KO K05699   actinin alpha 1/4 Organism char  Clupea harengus (Atlantic herring) Pathway char04510   Focal adhesion char04517   IgSF CAM signaling char04518   Integrin signaling char04519   Cadherin signaling char04520   Adherens junction char04530   Tight junction char04810   Regulation of actin cytoskeleton Brite KEGG Orthology (KO) [BR:char00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     105890994 (actn1)    04518 Integrin signaling     105890994 (actn1)    04519 Cadherin signaling     105890994 (actn1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     105890994 (actn1)    04520 Adherens junction     105890994 (actn1)    04530 Tight junction     105890994 (actn1)   09142 Cell motility    04810 Regulation of actin cytoskeleton     105890994 (actn1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:char04131]     105890994 (actn1)   09183 Protein families: signaling and cellular processes    04812 Cytoskeleton proteins [BR:char04812]     105890994 (actn1)    04147 Exosome [BR:char04147]     105890994 (actn1) Membrane trafficking [BR:char04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     105890994 (actn1) Cytoskeleton proteins [BR:char04812]  Eukaryotic cytoskeleton proteins   Actin filaments / Microfilaments    Actin-binding proteins     Cross-linking proteins      105890994 (actn1) Exosome [BR:char04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    105890994 (actn1)   Exosomal proteins of colorectal cancer cells    105890994 (actn1)   Exosomal proteins of bladder cancer cells    105890994 (actn1) SSDB OrthologParalogGFIT Motif Pfam:  Spectrin CH EFhand_Ca_insen EF-hand_1 EF-hand_7 EF-hand_8 EF-hand_6 EF-hand_5 XisI Motif Other DBs NCBI-GeneID:  105890994 NCBI-ProteinID:  XP_031436287 Ensembl:  ENSCHAG00000007871 UniProt:  A0A6P8GLH9 LinkDB All DBs Position 14:9674311..9722263 Genome browser AA seq 891 aa AA seqDB search MDQYDDDENHYMPQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIDNIEEDFRD GLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFITRKGVKLVSIGAEEIVDGNAK MTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCA LIHRHRPELIDYGKLRKDDPMTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTY VSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRA PENTMTAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMV SDIANSWGSLEGAEKGYEEWLLNEIRRLERLDHLAEKFRQKAAIHEAWTEGKEEMLHNRD FETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNGRCQRICD QWDALGALTQKRSEALQRTEKLLETIDQLYLEFAKRAAPFNNWMEGAMEDLQDTFIVHTI EEIQGLSTAHEQFKATLPEADKERQAILGIHNEITKIVQTYHVNMAGINPYTTINPQEIN GKWDKVRQLVPQRDQALIEEHARQQNNERLRRQFANQANVIGPWIQTKMEEIGRISIEMH GTLEDQLTHLRQYEKSIVNYKPKIDQLEGDHQLIQEALIFDNKHTNYTMEHIRVGWEQLL TTIARTINEIENQVLTRDAKGISQEQLNEFRASFNHFDRDHSGTLGAEEFKACLISLGFD IANDPQGEAEFARIMSIVDPNRLGLVNFQSFIDFMSRETADTDTADQVVASFKVLAGDKN YILADELRRELPPDQAEYCIARMAPYAGPDGVPGALDYMSFSTALYGESDL NT seq 2676 nt NT seq  +upstreamnt  +downstreamnt atggatcaatatgacgacgatgaaaatcattacatgccccaagaagatgactgggatcgc gatctccttctggatcctgcatgggagaaacagcagcggaagacattcacagcgtggtgt aactctcacttgaggaaagcaggaactcagattgataacatcgaggaggacttcagggat ggactcaaactcatgctgctgcttgaggtcatctcaggagagcgtttggccaagcccgag agagggaaaatgagagtccacaagatctccaatgtgaacaaagcccttgacttcatcacc cgcaaaggagtcaaacttgtctccattggagcagaggagattgtggacggcaacgccaag atgaccctgggaatgatctggaccatcatcctccgcttcgccatccaggacatctctgtg gaagagacttcagccaaagagggactgctgttgtggtgtcagaggaaaactgctccatac aagaatgtgaacatccagaactttcacatcagttggaaagatgggctgggattctgcgct ctcattcatagacatcgtccagaactcattgattatggaaaacttcggaaagatgacccg atgaccaatctgaacacagcatttgatgtagctgagaagtacctggacatccccaaaatg ttggacgcagaagacatcgttggtacagcccgtcctgacgagaaggccatcatgacctac gtctctagcttctaccatgccttctctggcgcccagaaggcggagacggcggccaaccgc atctgcaaagtgctggctgtcaatcaggagaatgaacagctcatggaggactacgaaaag ctcgccagcgatctgctggagtggatccgtcgcaccatcccgtggctggagaaccgtgcg cctgagaacaccatgacggccatgcagcagaagctggaggacttccgcgactaccggcgc ttgcacaagccgcccaaggtgcaggagaagtgccagctggagatcaacttcaacacgctc cagaccaagctgcgcctcagcaaccggcccgccttcatgccctctgagggcaagatggtg tcggacattgctaattcatggggatccctggagggtgctgagaagggctatgaggagtgg ctgctgaatgaaatccgcaggctggagagactcgaccacctcgccgagaagttccgccag aaagctgccatccatgaagcatggaccgaaggtaaggaggagatgctgcacaatcgggac tttgagacagccacgctgtcagagatcaaggccctgctgaagaagcacgaggcgtttgag agcgacctggccgcgcatcaggaccgcgtggagcagattgcggccatcgcccaggagctc aatgagttagactactacgactctcccagtgtgaacgggcgctgccaaaggatctgtgat cagtgggacgctcttggagcactcactcagaaacgtagtgaggccttacagcggactgag aaactgctggagaccattgaccagttgtatctggagtttgccaagcgtgccgcccccttc aacaactggatggagggagccatggaggacttgcaggacaccttcattgtgcataccatc gaggagatacagggcttgagtacagcccatgagcagttcaaggcgacccttcctgaggcg gacaaggagaggcaggccatactgggcatccacaacgagatcaccaagatcgtgcagacc taccacgtcaacatggctggcatcaacccctacaccaccatcaaccctcaggagatcaac ggcaagtgggataaggtcaggcagctggtccctcagagagaccaggccctgatagaggag cacgcccgtcagcagaataacgagcggctcaggcggcagttcgccaaccaggccaatgtc atcgggccctggatccagaccaagatggaggagattggccgtatctccattgagatgcat ggtaccctggaggaccagctgactcacctgcgtcagtatgagaagagcatcgtcaactac aagccaaagatcgaccagctggagggcgaccaccagctcattcaggaagctctcatcttc gacaacaaacataccaactacaccatggagcacatccgtgtgggttgggagcagctgctc accacgatcgctcgcaccatcaacgagatcgagaaccaggtcctcaccagagacgccaaa ggcatcagccaggaacaacttaacgagttcagagcctccttcaaccacttcgatagggat cactcgggcactctcggggctgaggagttcaaggcctgcctgatcagcctgggcttcgat atcgccaacgacccacagggagaggcagagtttgcccgcatcatgagcatcgtggacccc aacaggttgggactggtcaatttccagtccttcattgacttcatgtcccgtgagactgcc gacacagacactgccgaccaggtcgtggcctccttcaaagtactggctggggacaagaac tacatcctggcggatgagcttcgccgtgagctgccccctgaccaggccgagtactgcatc gcccgcatggcgccctacgctggccctgacggtgtgcctggcgccctcgactacatgtcc ttctccaccgccctctacggagagagtgacctttga

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