Clupea harengus (Atlantic herring): 105891016
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Entry
105891016 CDS
T09045
Name
(RefSeq) LOW QUALITY PROTEIN: VPS10 domain-containing receptor SorCS1
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105891016
Membrane trafficking [BR:
char04131
]
Protein recycling
Others
Others
105891016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Toxin_18
APC1_3rd
Motif
Other DBs
NCBI-GeneID:
105891016
NCBI-ProteinID:
XP_031417710
Ensembl:
ENSCHAG00000011594
UniProt:
A0A6P8F107
LinkDB
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Position
24:complement(5006500..5138857)
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AA seq
1287 aa
AA seq
DB search
MEKGIRFCPNWRRAACFLFLILCFFVPLAKTEITCRSCQPLDKTGSRELLLKLDTLEFAT
GSGGEVIKYGDGAAGFNSASGETRQSDSAAKSSEYGAGQGKYSHSRRKRNIDRHYLQKKP
VHGSVPNESGESGKSQNKVTQPQFNGRKVAGAGRAPDKLHKCRFRKSTQVKEIREILEKS
PAPAFHTESHAVSVQHEGTAGQPVRRFRRSEARWRGEDRRTANSKQDELKLTSSTFALTG
DSAHNQAMVHWSGQNSSVILMLTKFYDFNLGSVTESSLWRSTDYGTTYEKLNEKVGVKTI
LSYLYVSPNNKRKIMLLTDPEVENSLLISTDEGATYQKYRLNFYVLSLLFHPEQEDWILA
FGHDQKLYSSVEFGRRWQLVHERVAPNRFYWSKMGVDKEAGLIHLETSVSDTQALYITCK
LQNCTDGNKGRPFPGYIDPNSLVVQDEYVFVQVTTGGRTIYYVSSQRDVFSPMKLPKYTL
PKDLHVISTDEKRVVAAVQEWNQNDTFNLYVSESGGVYYTLALENVMSSMGHEGNVMIDL
YEVAGIKGMFLANKKQDNQVKTYITYNKGRDWRLLQAPDADLRGDGIHCMLPYCSLHLHL
HVSANPYTSGNIASKESSPGIILASGSIGSGLSSSNVSMFITSDAGNTWRQIFEEEYSVL
YLDQGGALVAIRHTPLPIRHLWLSFDEGRLWNKYSFTSSPLFVDGVLGEPGEETLIMTIF
GHVSHRSEWQLVKIDFRSIFNRRCTEGDYQTWHLQNQGETCLMGVKRIYRKLKPIARCVM
GKSHSVTMISEPCDCTESDFECDYGYERRSDGKCSPAFWFLPSSMTRSCTTASSFLNSTG
YRKVVTNNCTGGVVDLYTAHRQPCPRQAPRGLHLVTSDGTLTATVNSNVTFLVFLEEGSG
SRTTIMLDFGNGNTVTYSNISTVEDGIKHVYRSVGIYRVAATARNDLGVETVVLYLHVSC
PLEHIHLSAPFVAVKNKEVNLTAVLWPSQVGTATYIWWLGNNSEPVITLDGSVAFTFSRE
GTNVVTVQVSAGNIILQDRKIIAVHEYFKSHLLAFSANLDEHNPDVAEWRLDVSRVIRNS
VIQATGIDRELLLVTVLPGLPTTAEFFLLPDKRVTEGKPEKTSAHLDELSEVVLGALNQN
LVQFILRPGVQITVYAAHLSAAPLVDTSENHSGSAMLMLLSLVVVGLAVFVVYKFKRKIP
GLSVYAQMQNEKEQEMIQSPVSPAAVVDTTVATATTAGGKPAPHPARELVTSSLRPLDTE
RNTHTIECIKPHPRVKFSTELPTYIDV
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggggatcagattctgcccaaattggcgccgcgctgcctgtttcctgtttttg
attctttgcttttttgttccgttggccaaaacggagataacttgcagatcatgccagccc
ctggacaagactggttcacgggaattactgctgaaactggacacgctagaattcgcaaca
gggtccggaggggaagttatcaaatatggagacggggcagcaggttttaattctgcaagt
ggtgaaactcgccagtctgacagcgcagctaagtcatcagaatacggtgcgggtcaaggg
aaatactctcattccaggcgaaagcggaatattgacaggcactatttgcagaagaaaccc
gtccatggaagcgtgcctaatgaaagcggggaatcaggcaaaagccagaataaagttaca
cagccccagtttaacggtcgcaaggtagcaggtgccgggagagcccccgataaattacac
aagtgcagatttcgtaagagcacccaggtgaaggagatcagagaaattcttgaaaagtca
cctgcacctgcttttcacacggagtcgcacgctgtcagtgtccagcatgagggcaccgca
gggcagcctgtgcgcaggttccgccgctctgaggcgcggtggagaggggaggaccggaga
acggccaattcaaagcaggacgagctgaaacttaccagctcaacctttgcattgaccgga
gactcagcccacaaccaagccatggtacattggtctgggcagaacagcagtgtcattttg
atgctgacaaaattctacgactttaatctgggcagcgtgacagagagctccctgtggcgg
tcaactgactacgggaccacttacgagaagctaaacgagaaggtgggggtgaaaacaatc
ctcagctacttgtacgtcagtcccaacaacaagcgcaagatcatgctgctgactgacccg
gaggtggagaacagtctgctcatcagcacggacgagggggccacgtaccagaagtaccgc
ctcaacttctacgtcctcagcctgctcttccaccccgagcaggaagactggatcctcgcc
ttcggccacgaccagaagctgtacagttccgtggagttcggcaggagatggcaactggtc
catgaacgagtcgcccccaatcgattttactggtcaaagatgggcgtggacaaagaggca
ggcctcattcatctggagaccagcgtatcagacacacaggccctgtacatcacctgtaaa
ctgcagaactgcacagacggcaacaaggggaggccgttccctggctacatcgaccccaac
tccctggtggtgcaggatgagtacgtgtttgttcaggtcaccacaggtggcaggacgatc
tactacgtgtcatcacagcgggacgtcttcagccctatgaagctcccgaaatacaccctg
cctaaggacctgcacgtgatcagcacggatgagaagcgcgtggtcgcggcggtgcaagag
tggaaccagaatgacaccttcaacctgtacgtgtccgagtccggaggggtctactacaca
ctggccctggagaacgtcatgagcagcatgggccacgaggggaacgtcatgatcgacctg
tatgaggtggcaggaataaaaggcatgttcctggcgaacaagaagcaagacaaccaggtc
aagacttacataacctacaacaagggccgcgactggaggctgctgcaggcccctgatgca
gatctgagaggcgacggcatccactgcatgctgccgtactgctcccttcacttgcatctc
catgtgtcggccaacccgtacacgtccggaaacatcgccagcaaagaatcatcacccggc
atcatcctggcatcaggctctattggttctggactgagcagcagtaatgtcagcatgttc
atcacatccgacgcaggcaacacatggagacagatcttcgaggaggagtacagcgtgctc
tatctggaccagggtggggctctggtggccatcagacacactccacttcccatcaggcac
ctctggctcagcttcgatgagggcagactgtggaacaagtacagcttcacgtcgtctccg
ctgttcgtggacggcgtcctgggggagcccggagaagagaccctgatcatgacgatattc
ggtcacgtgagccatcgctccgagtggcagctggtgaagatcgacttcaggtccatcttt
aaccgccgctgcactgagggcgactaccagacctggcacctgcagaaccagggtgagacg
tgcctcatgggggtgaaacgcatctacaggaagctgaagccaatagcccggtgcgttatg
ggtaaatcgcactcggtcaccatgatctcggagccgtgcgactgcaccgagtccgacttc
gagtgcgactacggctacgagaggcgaagtgacgggaagtgctcccccgccttttggttc
ctcccgtcgtcgatgacgaggagctgcaccacggcgagcagcttcctcaacagcacaggc
tacaggaaggttgtgaccaataactgcacaggtggagtggtggacctgtacacggcacac
aggcagccatgcccccgccaggcccctagggggctccacctggtcaccagcgatggcacc
ctcaccgctaccgtcaacagcaacgtcactttcctggtgtttctggaagagggctctggc
tcacgcaccaccatcatgctagacttcggcaacggcaacaccgtcacctactccaacatc
agcacggtggaggacggcatcaagcacgtgtacaggagcgtgggcatctaccgcgtggcg
gccaccgccaggaacgacctgggcgtggagaccgtggtgctgtatctgcacgtgagctgt
ccgcttgaacacatccacctctcggctcccttcgtggccgtgaagaacaaagaggtgaac
ctgacggccgtgctgtggcccagccaggtgggcaccgccacctacatctggtggcttggc
aacaacagcgagccagtgattaccctggatggaagcgtcgccttcaccttctccagggaa
ggaaccaacgttgtcacggtgcaggtgtccgctgggaacatcatcctgcaggacaggaag
atcatcgccgtccacgagtacttcaagtcccatctcctggctttctccgccaacctggac
gagcacaaccctgacgtggccgaatggagactggacgtcagccgggtcatcaggaactcc
gtgattcaagccactggtatcgaccgggagctgctgctggtcaccgttttgccggggcta
cctaccacagcagagttcttcctgctgccggacaaacgcgtcaccgagggcaagcccgag
aagacctccgcacacctggatgagctctctgaggtggtgttaggagccttgaatcagaac
ctggttcagtttatccttagaccaggagtccagatcaccgtctacgctgcacacttatca
gccgcacccctagtggacaccagcgagaaccacagcggttcggccatgctgatgctcctg
tctctggtggtggtgggtctggccgtgtttgtcgtctataaattcaagaggaagatccca
ggcctcagcgtctatgcacagatgcagaacgaaaaagaacaagaaatgatccagagcccg
gtgagccccgccgccgtcgtggacactacggtggcgacggcgacgacggcgggggggaag
ccggcaccacaccccgctagggagttggtgacttcttcactgaggcctctggacacggag
cgcaacactcataccattgaatgcattaaacctcatccacgagtcaaattttcaacagaa
ctccctacttacattgacgtctga
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