Clupea harengus (Atlantic herring): 105891017
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Entry
105891017 CDS
T09045
Symbol
sorcs3
Name
(RefSeq) VPS10 domain-containing receptor SorCS3
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105891017 (sorcs3)
Membrane trafficking [BR:
char04131
]
Endocytosis
Others
Others
105891017 (sorcs3)
Endosome - Lysosome transport
105891017 (sorcs3)
Endosome - Golgi transport
105891017 (sorcs3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
105891017
NCBI-ProteinID:
XP_031417779
Ensembl:
ENSCHAG00000008187
UniProt:
A0A6P8EZE1
LinkDB
All DBs
Position
24:4766253..4943973
Genome browser
AA seq
1251 aa
AA seq
DB search
METGCGLFHGSNLILSLWLIISANIVITTRADITCAPCPSPVQVTRKDVHLDERAVPAGT
GNPPKQAEPESRVFDRNSGVFAEQAGSGPVDVAKFANGLGRNGVNTKVFSEASIIKSEYE
EFDMGKSTNYDGGSDFDKVEKGDATFFRAKRSGPEPFEFSESSWSTEGDRMYSDSSTERK
IPGPLLDEQKLRSEPRSNRDDAKVTSSKQDEPKLTSSTFALTGDSAHNHAVVYWSGQNSS
VILILTKLYDFHLGSVTESTLWRSTDYGTTYEKLNDKVGVKTVLSYLYVCPTNKRKIMVL
TDPEFESSVLISSDEGASYQKYRLSFYVLSLLFHPAQEDWALAYSHDQKLYSSLDFGRKW
QLVHEAVTPNRFYWSVIGLDKETDLVHLEANTPDGRAQYVTCRVQSCSEANRNYPLAGYI
DTNSLVVQDDYMFIQVTSAGRAWYLVSYQREPFMRIKLPKYSLPKDMHIISTDEGQVFAA
VQEWNQNDTYNIYISDPQGIHFTLALENVKATRGLGGNSMIDLYEVAGIKGMLIANRKLD
NQVKTYITYNKGRDWRLLQAPTSDLEGNDIHCVLPFCSLHLQLQMSENPYLSGNIISKSS
APGVIVATGNIGSELSYNNVGMFISSDAGNNWRQIFEEEHNVWLLDKGGALLAVKQPTVP
TRHLWVSFDEGRQWDQHSFSMVPLFVDGVLVEPGIDSQIMTFFGHFSHRSEWQLIKIDYK
SLFSRRCTEGDYQTWHLHNQGEPCVMGQKQIYMKRRPGNHCMLGRDYARVLSAEPCICRA
HDFECDYGYERRGDGNCSPSFWYNPATVSRTCSHGQNYLNSTGYRKVAANNCTKGVKEMY
TARRQLCPNRAPRGLQLSTGEGKLTAPLASNVSFLVQLEEGDSMRTHIQLDFGDGTAVSY
SNLTWAEEGIKHVYRTAGIFRVTALAENEMGADSTSLYLHVTCVVEHVQLLAPFVVIKNK
EVNLSAVVWPSHSRTLTFFWWLGNSSEPIITLDGSISHTFTSEGMHTVTVQVSSANSILQ
DTKTIAAQEFFKSLLLSFSPNLDEVNPDIPEWRQDVGRVIKKALLQIADIPEKQLLVAVF
PGVPTAAELFLLPSKNQSEGRKKNEEELEQISDILVSALNQNLVEFELRPGSRVIVYITQ
LTLAPLVDSSPRHSSSAMLMLLSVVFLGLAVFLIYKFKRKIPWINIYAEVNHEKEQEMIN
TVGQSEAAPKITLSEFPTQKELMEKELECRVKRGMVNPCENTREIPNCTSV
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atggagacgggttgtggtttgtttcacggctccaatttaattctatctttatggttaatc
atatccgctaatattgtaataactacgcgggcagatatcacttgcgcgccttgcccatcg
cctgtgcaagttacccgtaaggatgtacatctggatgagcgcgccgttccggcagggact
gggaatcctccgaaacaagctgaaccggagtcaagagtttttgacagaaatagtggagta
ttcgccgaacaagctggtagtggtcctgtggatgtagctaaatttgcgaatggccttgga
cgaaatggggttaacacgaaagtcttctctgaagcttcaattataaaaagtgaatacgaa
gaatttgacatgggtaaatcgacaaactacgatggaggatccgattttgacaaagtggag
aaaggggatgcgacattttttagagccaaacgaagcggaccagaacccttcgaattttct
gaaagctcgtggagcaccgaaggcgaccgaatgtacagtgactcatcgaccgaaaggaag
attcccggcccgcttttggacgagcaaaaactgaggtccgagccccggtcgaacagggat
gatgcgaaagtaaccagctccaagcaagacgagccgaaactaacaagcagcacttttgct
ttgacgggagactctgcccacaaccacgctgtcgtgtattggtctgggcaaaatagcagc
gtgattcttattctcaccaagctgtatgatttccatctggggagtgtgacagagagcaca
ttatggagatcgacggattatgggacaacttatgagaaattgaacgacaaagtcggagtg
aagactgtcctcagctacctatatgtgtgcccgaccaacaagaggaagataatggtgttg
actgacccggagtttgaaagcagcgtgctcatcagctcggacgaaggcgccagctaccag
aagtaccggctgagcttctacgtcctcagcctgctcttccacccggcccaggaggactgg
gccctggcctacagccacgaccagaagttgtacagctctcttgattttgggaggaagtgg
caacttgtccacgaagcggtaactccaaacagattctactggtctgtaatcggcctggat
aaggagactgacctcgttcacctggaggccaacacgccggatggacgtgcgcagtatgtg
acctgtcgggtgcagagctgctcagaggccaaccggaactaccccttggcgggctacatc
gacaccaactcattggtggtccaggacgactacatgttcattcaggtcacctccgctgga
cgggcgtggtacctcgtgtcctaccagagggagcccttcatgcgaattaaactgcccaaa
tactccctacccaaggacatgcacatcatcagcacggacgagggccaggtgtttgctgcc
gtgcaggagtggaaccagaacgacacctacaacatctatatctccgacccgcagggcatc
cacttcaccctggccctggagaatgtcaaagctacccgtggcctcgggggcaacagtatg
atcgacctgtacgaggtagcgggaataaaggggatgctgatcgccaaccgtaagctggac
aaccaggtgaagacttacatcacctacaacaagggccgtgactggagactgctacaggcc
cctaccagtgacctcgaaggaaacgacatccactgtgtcctgccattctgctccctgcat
ctccaactgcaaatgtcagaaaacccgtacctctcagggaacataatcagcaagagctcc
gcaccgggagtcatcgtggccacaggaaacatcggctcagagctctcctacaacaatgtc
ggcatgtttatatcctccgacgccgggaacaactggagacagatttttgaagaagagcac
aatgtctggttgttagataaaggaggtgccttgcttgctgtcaaacagcccactgtgccc
accagacatctatgggtgagctttgatgagggtcggcagtgggaccagcacagcttctcc
atggtgcctctgttcgtggacggcgtgctggtggagcctggcatagacagccagatcatg
acgttcttcggacatttcagccatcgctcagaatggcagctcattaagatcgactacaag
tcgctcttctcccggaggtgcacggagggggactaccagacctggcatctccacaaccag
ggtgaaccgtgtgtgatgggccagaaacagatctacatgaagcgccgtccgggcaaccac
tgcatgcttggccgagactatgccagggtcctgtccgccgagccctgcatctgcagagcg
cacgactttgaatgtgattatggatatgagcgtcgtggagacggaaactgctcgccgtcg
ttctggtacaaccccgcaaccgtgtccaggacctgcagccacggacagaactacctcaac
agcacaggataccgtaaggtggcggcaaataactgcaccaagggggtgaaggagatgtac
acagcgcgccggcagctgtgccccaaccgagcgccccgcggcctgcagctcagcaccggg
gagggcaagctcaccgcgccgctggcctccaacgtctccttcctggttcagcttgaggag
ggcgactccatgcggacacacatccagctggactttggcgatggcacggccgtgtcctac
tccaacctcacctgggccgaggagggcatcaagcatgtgtaccggaccgccggaatcttc
cgggtcaccgcgcttgcggagaatgagatgggcgccgacagcacctccctctacctgcac
gtcacatgtgtggttgagcacgtccagctcctggctccgttcgtggtcatcaagaacaag
gaggtgaacctgtcggccgtggtctggcccagccactccagaacgctcaccttcttctgg
tggcttggcaacagctccgagcctattataactttggacggcagcatctcgcacaccttc
accagcgaaggcatgcacacggtcactgtccaggtgtcctccgccaactccattctgcag
gacacgaagaccatagccgcgcaagaattcttcaaatcgttgcttttatctttctctcct
aatctggacgaggtcaaccctgacatccctgagtggagacaggatgttggcagggtaatt
aagaaggctctgctgcaaattgctgatattccggaaaaacagctcctggtcgcagtgttt
cccggcgtcccgactgccgccgagctgttcctcctccccagcaagaaccaatcagaaggc
cggaaaaagaatgaggaggagctagagcagatttcagacatcctggtcagtgccttgaac
cagaacttggtggagtttgagctgaggcctggctctcgggtcattgtctacatcacgcag
ttaaccttggccccgctggtagactcgagcccgagacacagtagctctgctatgctcatg
ctcctctctgtggtgttcctgggtttagccgtctttctcatctataaattcaaaagaaaa
atcccatggatcaacatttatgcggaggtgaaccacgagaaggagcaggaaatgatcaac
acggtggggcagagcgaggcggcgcccaagatcaccctcagcgagttccccactcagaag
gagctgatggagaaggagctggagtgccgagtcaaacggggcatggtgaacccatgtgag
aacaccagggagattccaaactgtacgagcgtgtaa
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