Clupea harengus (Atlantic herring): 105891078
Help
Entry
105891078 CDS
T09045
Name
(RefSeq) transient receptor potential cation channel subfamily M member 1
KO
K04976
transient receptor potential cation channel subfamily M member 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105891078
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
105891078
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSDAT_euk
TRPM2
LSDAT_prok
TRPM_tetra
Ion_trans
YVC1_C
Motif
Other DBs
NCBI-GeneID:
105891078
NCBI-ProteinID:
XP_031424516
Ensembl:
ENSCHAG00000015154
UniProt:
A0A6P8FLN5
LinkDB
All DBs
Position
6
Genome browser
AA seq
1619 aa
AA seq
DB search
MDSRVPGGRKSGSFRHASIKRTISGSQKGQKVWIEKTFQKRECIHILPSKDPTRCSCGRL
ASQHVGLLSSPAVKNEEDPVEGERWSVNKHTQASPTDAYGVIEFQGGGHSCKAMYIRVSY
DTKPDALLQLMVQEWQQELPALLISVHGGLQNFDLQPKLKQVFGKGLIKAAVTTGAWIFT
GGVSTGVMRHVGDALKEHSSKSRGKVCAIGIAPWGIVENKEDLIGQDVTRPYQTMSNPLS
KLSVLNNSHSHFILVDNGTHGKYGAEVRLRRQLEKHVSLQKINTRLGQGVPLVCLILEGG
PNVIATVCEHLREEPPVPVVVCDGSGRASDIISFAHKFSEGNGMVSDAVRDQLLVTIQKT
FNYSRSQAQQIYLMVMDCMKKRELITVFRMGSEGQQDIEMAILTALLKGTNASACDQLSL
ALAWNRVDIARSQIFIGHNLPPGGALPTTTTPLEKTKSPAAVRAPGKGKAARGKKGKAGK
AKPEPPEETDPRKLELLNWVISLEQAMMDALVLDRVDFVKLLIENGVNIHHLLTIPRLEE
LYNTRLGPINTLHSVVRDVKKGNLPPDYQITLIDIGLVLEFLMGGAYRCHYTRKSFRTLY
NNLYGLKRPKALKLLGMGDDDPRPKGKKKGKRREEEVDIDVDDPEVCRFQYPFHELLVWA
VLMKRQRMALFLWQRGEETMAKALVACKLYKAMAVSLESSQSEVVDDISQDLENNSKEFG
QLAYDLLDQSYKQDEQVAMKLLTYELKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTDMW
MGCLRMGKVNGLKVILGIVFPPYILLLDFRFGDDTAYQGVSEDNKDQEDDKSCKDTESKK
EDEENAGKKQRRVPIGKKIYEFYNAPFTKFWFNTTAYLGYLMLFNYIILVKMERWPSLQE
WIVISYIITLGLEKIRQILMSDPGKLKQKINVWLEEYWNITDLVAISVFLLGLLLRLQNE
PYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMMGKMMIDMLYFVVIMLVVLMSFG
VARQAILHPDEEPTWRLARNIFYMPYMMIYGEVFADSIDLYAMEINPPCGDHLFEEDGKK
LPPCIPGAWLTPAIMACYLLVANILLVNLLIAVFNNTFTQVKSISNQVWKFQRYQLIMTF
HDRPILPPPLIIFSHIFIVLKRICCCRHKREGELSERDKGLKLILSPEELRSLYEFEEQC
VEEHFREKEDKEQSSNNERIRITSERVENMAVRLEEVNERETKMKACLQTVDLRLGQMEE
FASRMMNAVQVLAGVDCSEHLQPRSRNSSICDPASLWRHGSIHSSDGYSLHRYHAETDGP
TGAEDKMGSETKQSEKQTLPVIELEQTLDLVSATEGTERWNKSSCLDLSPCDTHANTKLA
TNPSLVANLFPTQPKAQEERGSPIVEKQKLEAALSYPLEHTRALQHYSFLQVTPPVLGHA
HNNKTENQTWGTDDSHVKKWVSQPLATSNKSLSSPYGVSEFEYRKHNLMFQGTVVNTTQK
VAVHTCNIMEGNGEIKRDLTDKDRGATEIQVQNKIEERREIDMKSLFLSEKSMYPPLRSK
SLHANPWNMRSSYESVDRPCRSASSEHDLPVACDGGPEHHSDRGTTKREDIDRDSMFKN
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atggacagccgggtacctggaggaagaaagagcggatctttcagacatgcttctataaaa
cgcaccatctctggttctcagaagggtcaaaaggtatggattgagaagacatttcaaaag
agagagtgtattcacatccttcccagtaaagaccccactagatgtagctgtggtcgattg
gccagtcagcatgtgggactcttatcaagtccagctgttaagaatgaagaggatccagtg
gaaggggagagatggtcagtgaataagcacactcaggcttcacccacagatgcgtatggt
gtcatcgaattccaaggaggaggtcatagctgcaaagccatgtatatccgagtctcctat
gacactaaaccagatgcactgcttcagctgatggttcaggagtggcagcaggagctccca
gctcttctcatctcagtccacggagggctgcagaactttgacctacagcccaaactcaag
caggtgtttgggaaaggtttgatcaaagcagcagtcactacaggagcctggatcttcact
ggaggcgtcagcacaggtgtgatgcgccatgtgggagatgcactgaaagagcactcctct
aaatctagagggaaagtatgtgccattggaattgccccctggggaattgtggagaataag
gaggacctcattggccaagatgtgacacggccataccagaccatgtcaaacccactgagt
aagctgtcagtcctaaacaacagccactcacattttatcctggtggataatggaactcat
ggcaaatatggtgcagaagtgcgcctacgcagacaactagagaaacacgtctctctccag
aagatcaacacacgcctggggcagggtgtgcctctggtgtgcctgatcctggaaggtggc
cctaatgtgatcgccactgtgtgtgagcacctgcgtgaggaacctccggtgcctgtggtg
gtctgtgatggcagcggacgagcatctgacatcatctcattcgctcacaagttctcagag
ggaaatgggatggtgagtgatgctgtgagggaccagctgctagtcaccatacagaagaca
ttcaactacagccggagtcaggcccagcagatctacctcatggtgatggactgcatgaag
aagcgagaactgattacagtgttccgcatgggttcagaaggccagcaggatattgagatg
gccatacttaccgcactgctaaaagggactaatgcctctgcttgtgaccagctcagcctg
gccctggcctggaacagagtcgatatcgcccgcagtcagatttttattggccacaacttg
cctccggggggtgccctaccaaccacaaccacgccgcttgagaagaccaagagcccagca
gctgtgcgggcgcctgggaaagggaaggcagcgcgtgggaaaaagggcaaggcaggcaag
gccaagccagagcctcccgaggagactgacccgcgcaaactggagctgctcaactgggtc
atctctctggagcaagccatgatggatgcattggtgttagacagagtggatttcgttaaa
ctactgattgagaatggagttaacatccatcaccttctcaccataccacgcctggaggag
ctctataacacgagactggggcctataaacactttgcattctgtggtcagagatgtaaaa
aagggaaaccttcctccagattatcagattactctcattgacattggattggtcctggag
ttcttgatgggaggagcatatcgttgtcactacacccggaagagtttccggaccctctac
aacaatctctatggcctgaaacgaccaaaagcactgaagcttctggggatgggggacgac
gacccacgtccaaaaggcaaaaagaaagggaagaggagggaggaggaggtggacattgat
gtagatgacccagaggtctgccgttttcagtaccccttccatgaactcttggtgtgggct
gtgctgatgaagcgccagaggatggccctgttcctgtggcagcgtggggaggagaccatg
gccaaggctctggtggcgtgtaagctgtacaaggccatggctgtgagtctggagtcttct
cagagtgaagtggtggatgacatctcgcaggacctggaaaacaactccaaggaatttggc
cagcttgcgtatgacctgttggatcagtcctacaagcaggatgagcaggtggctatgaag
ttgttgacatatgagctgaagaattggagcaactctacctgtcttaagctggcggtggcc
gccaaacacagagacttcattgcccacacatgcagccagatgctgctcacggacatgtgg
atgggctgccttcggatggggaaggttaatggcctgaaggtgatcctgggtattgtattt
ccaccatatattctgctcctggacttccgcttcggagatgacacagcctaccaaggtgtg
agcgaagacaacaaagaccaggaggatgacaaatcttgcaaggacacagagtctaagaag
gaggatgaggagaacgctgggaagaagcaaaggcgtgtccccattgggaaaaagatctat
gagttctacaatgcccccttcactaagttctggttcaatactacggcctatcttgggtac
ctcatgctcttcaactacatcatcctggtcaagatggagcgctggccttcgctgcaggag
tggattgtcatctcttatattatcactcttggactggaaaagattcgccagattctgatg
tcagaccctggtaaactaaagcagaagataaatgtgtggctggaggaatactggaacatc
acagacctggtggccatttctgtgttcctgctgggcctgctgctccgactccagaatgag
ccctatatggggtacgggcgcgtcatctactgcgtggacatcatcttctggtacatacgt
gtgctcgacatctttggtgtcaacaaatacctgggaccttatgtgatgatgatggggaag
atgatgatagacatgctttactttgtggtgatcatgctggtggtgctgatgagttttggt
gtggcgcgtcaggccatcctgcaccctgatgaggaaccgacgtggcgtctggcccggaac
atcttctacatgccctacatgatgatctatggggaagtgtttgcagattccatagacctc
tatgcaatggagatcaatccaccttgtggggatcatttgtttgaagaagatggcaagaaa
cttcctccctgcattcctggagcctggctcacccctgcaatcatggcgtgttacctgctg
gtggcaaacatcctactagtcaacctcctcatcgcagtattcaacaacacattcacccag
gtgaagtcgatctccaaccaagtgtggaagttccagagataccagctcatcatgaccttc
catgaccggcccatcctgccaccacccctcatcatcttcagccacatctttattgtgctt
aaacgcatctgctgctgccgccacaagagggagggggaactgagtgagcgggacaaagga
ctgaagctcatccttagccctgaagagttgaggagtctgtatgagtttgaggagcagtgt
gtggaggaacactttagagagaaagaagataaggagcagtcctccaacaacgagcgtatc
cgcatcacatctgagagggtagagaacatggctgtgcgtctggaggaggtgaatgaacgc
gagaccaagatgaaggcatgccttcaaactgtagacctgcgtctgggtcagatggaggag
tttgctagtcgcatgatgaatgctgtccaagtgctagcaggggtggactgcagtgaacat
cttcaacctcgctcgagaaactcctctatctgtgatcctgcatcgttatggcgacatggc
agcattcacagtagtgatggctatagcctacatcggtaccatgccgagacagacggcccg
acaggcgctgaagacaaaatgggatcagaaacaaagcagagtgagaagcaaacactccca
gtgatagagttggaacagactctggacttggtttcagctactgaaggaacagagaggtgg
aacaaaagctcttgcttagacctctcaccatgtgatacgcacgccaatacaaaactagct
acaaacccatcacttgttgccaaccttttccctacacaacccaaagcacaagaggaaagg
ggtagtcctattgttgagaaacagaaactagaagcagccttgtcataccccctggaacac
accagagctttgcagcactattctttcctacaggtaacaccacccgtccttggacacgcc
cacaataataagacagaaaatcaaacctggggaacggatgacagtcatgttaagaagtgg
gttagtcagccgctggccacaagtaacaaatccctctccagtccttacggggtgtcggag
tttgaatacagaaaacacaatttaatgtttcaaggcaccgtggtgaatacaactcagaag
gtggcagtacacacatgtaatatcatggaaggcaatggagaaataaaacgggacttgacg
gacaaagacagaggagcaacggagatacaagtgcaaaataaaatcgaggagagaagagaa
attgacatgaaaagtttgtttctgtcagagaaatctatgtatccgcctttgcgttccaaa
agcctgcatgctaatccctggaacatgaggagctcttacgagagtgtcgacaggccctgc
cgatcagccagtagtgagcatgacctccctgtagcctgtgatggaggccctgagcaccac
tcggacagagggacaacaaagagagaggacattgacagagatagtatgttcaaaaactga
DBGET
integrated database retrieval system
