KEGG   Clupea harengus (Atlantic herring): 105891100
Entry
105891100         CDS       T09045                                 
Symbol
mex3b
Name
(RefSeq) RNA-binding protein MEX3B
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105891100 (mex3b)
   04121 Ubiquitin system [BR:char04121]
    105891100 (mex3b)
Enzymes [BR:char01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105891100 (mex3b)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     105891100 (mex3b)
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    105891100 (mex3b)
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 KH-I_KHDC4-BBP KH_2 zf-C3HC4 RING_XB3-XBAT31 zf-C3HC4_2 KH_DEAH11_2nd Prok-RING_4 zf-RING_UBOX
Other DBs
NCBI-GeneID: 105891100
NCBI-ProteinID: XP_012672693
Ensembl: ENSCHAG00000009813
UniProt: A0A6P3VIF3
LinkDB
Position
6:30062766..30066842
AA seq 544 aa
MPSSLFADMERNGSNQVDALDDQRALQIALDQLSLLGLDNDENSMYDNEPRKKSVNMTEC
VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIIS
AAEHFSMIRASRNKNSTVNGSGTVPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQ
QQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHIAMRTGGLIELTDENDFHANGTD
VGFDLHGHASLWSKPTSTSTTMTPNSGRKPFSNYRNDSSSSLGSASTDSYFGNNSSSRLA
DYSPPSPALSYTASNNGNNNNNNVNINVNTNGNEFVYGSEVISPDCTDLTFESSPGFDPT
PAPPGLLWSQYERGVVPAGGNTSTIYPANASTNANGMIANQRRANGVGSTTQPRLSPPLN
HVGGTAEHPLARRVRSDPGGGTLSYPGNALAAGIANLSGSHLPGVPSDSSASSTSSSSSS
SSSGTSRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICDKHEPKCPVCLSAVTQAI
RIFS
NT seq 1635 nt   +upstreamnt  +downstreamnt
atgcctagttcgcttttcgccgacatggagaggaatgggagtaaccaagtggacgccttg
gacgaccaaagagctctacagatagcactggaccagctttcgttgcttggtttggacaac
gacgaaaattcaatgtatgacaatgagccgaggaaaaagagcgtgaacatgaccgaatgt
gtcccagttcctagttcagagcacgtagctgaaatcgtcggcagacaaggttgcaaaatt
aaagccctccgagcaaagaccaacacctatatcaagactccagtgcgtggggaggaacca
gtctttgttgtgacaggcagacgagaggatgtagcaatggccaggagggaaatcatctct
gcagcagagcatttctccatgatccgagcctccaggaacaagaacagcaccgtgaatggg
agtggcaccgtccccgggccacctaaccttcctggacagactaccatccaggtgcgggtt
ccctacagggtggtgggattagtggtgggacccaagggggccaccatcaagcggatccag
cagcagacgcacacctacatcgtcacgcccagccgagacaaagagccagtcttcgaggtc
acgggcatgccagagaatgtggaccgcgcgcgagaagagatcgaagcacatatcgccatg
cgcactgggggactcattgagctgaccgacgagaacgacttccacgccaacggcactgat
gtgggcttcgacctgcacggccacgctagcctgtggagcaagcctacctccacctccacc
accatgacccccaactctggacgcaagcctttctccaactaccgcaatgacagctccagc
tcgctgggcagtgcctccacagactcctactttgggaacaacagcagctcccggctggca
gactacagccctccaagccccgccttgagctacaccgcttccaacaatggcaacaacaac
aacaacaatgtcaacatcaatgtgaacaccaacggcaacgagtttgtctacgggagtgag
gtgatttcgcctgactgcactgacttgaccttcgagtcctcacccggatttgaccccacg
cccgcccccccggggctcctctggtctcagtacgagcgtggtgtggtgcccgccggtggc
aacacttcaaccatctaccctgccaatgcttccactaatgccaacggaatgattgctaac
cagcggcgagccaacggggtgggcagcaccacccaaccccgcctgtccccgccgctgaac
cacgtcggagggactgccgagcaccccctggcccgccgagtgcgcagtgaccccgggggt
ggaaccctgagctaccccggcaacgcgctggccgccggcatcgccaacctctcgggctcc
cacctccccggggtgccgtccgactcctcggcctcctccacctccagctcctcgtccagc
tcctcctcggggaccagcaggaagggcagccgggactgctcggtgtgctttgagagtgaa
gtcatcgcggcgctggtcccctgtggccacaacctgttctgcatggagtgcgccaatcgc
atctgtgacaaacatgagcccaaatgccctgtctgcctctcagccgttactcaggctata
cgtatattttcataa

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