Clupea harengus (Atlantic herring): 105891100
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Entry
105891100 CDS
T09045
Symbol
mex3b
Name
(RefSeq) RNA-binding protein MEX3B
KO
K15686
RNA-binding protein MEX3 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105891100 (mex3b)
04121 Ubiquitin system [BR:
char04121
]
105891100 (mex3b)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105891100 (mex3b)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105891100 (mex3b)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105891100 (mex3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_Vigilin
zf-C3HC4_3
KH-I_KHDC4-BBP
KH_2
zf-C3HC4
RING_XB3-XBAT31
zf-C3HC4_2
KH_DEAH11_2nd
Prok-RING_4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
105891100
NCBI-ProteinID:
XP_012672693
Ensembl:
ENSCHAG00000009813
UniProt:
A0A6P3VIF3
LinkDB
All DBs
Position
6:30062766..30066842
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AA seq
544 aa
AA seq
DB search
MPSSLFADMERNGSNQVDALDDQRALQIALDQLSLLGLDNDENSMYDNEPRKKSVNMTEC
VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIIS
AAEHFSMIRASRNKNSTVNGSGTVPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQ
QQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHIAMRTGGLIELTDENDFHANGTD
VGFDLHGHASLWSKPTSTSTTMTPNSGRKPFSNYRNDSSSSLGSASTDSYFGNNSSSRLA
DYSPPSPALSYTASNNGNNNNNNVNINVNTNGNEFVYGSEVISPDCTDLTFESSPGFDPT
PAPPGLLWSQYERGVVPAGGNTSTIYPANASTNANGMIANQRRANGVGSTTQPRLSPPLN
HVGGTAEHPLARRVRSDPGGGTLSYPGNALAAGIANLSGSHLPGVPSDSSASSTSSSSSS
SSSGTSRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICDKHEPKCPVCLSAVTQAI
RIFS
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgcctagttcgcttttcgccgacatggagaggaatgggagtaaccaagtggacgccttg
gacgaccaaagagctctacagatagcactggaccagctttcgttgcttggtttggacaac
gacgaaaattcaatgtatgacaatgagccgaggaaaaagagcgtgaacatgaccgaatgt
gtcccagttcctagttcagagcacgtagctgaaatcgtcggcagacaaggttgcaaaatt
aaagccctccgagcaaagaccaacacctatatcaagactccagtgcgtggggaggaacca
gtctttgttgtgacaggcagacgagaggatgtagcaatggccaggagggaaatcatctct
gcagcagagcatttctccatgatccgagcctccaggaacaagaacagcaccgtgaatggg
agtggcaccgtccccgggccacctaaccttcctggacagactaccatccaggtgcgggtt
ccctacagggtggtgggattagtggtgggacccaagggggccaccatcaagcggatccag
cagcagacgcacacctacatcgtcacgcccagccgagacaaagagccagtcttcgaggtc
acgggcatgccagagaatgtggaccgcgcgcgagaagagatcgaagcacatatcgccatg
cgcactgggggactcattgagctgaccgacgagaacgacttccacgccaacggcactgat
gtgggcttcgacctgcacggccacgctagcctgtggagcaagcctacctccacctccacc
accatgacccccaactctggacgcaagcctttctccaactaccgcaatgacagctccagc
tcgctgggcagtgcctccacagactcctactttgggaacaacagcagctcccggctggca
gactacagccctccaagccccgccttgagctacaccgcttccaacaatggcaacaacaac
aacaacaatgtcaacatcaatgtgaacaccaacggcaacgagtttgtctacgggagtgag
gtgatttcgcctgactgcactgacttgaccttcgagtcctcacccggatttgaccccacg
cccgcccccccggggctcctctggtctcagtacgagcgtggtgtggtgcccgccggtggc
aacacttcaaccatctaccctgccaatgcttccactaatgccaacggaatgattgctaac
cagcggcgagccaacggggtgggcagcaccacccaaccccgcctgtccccgccgctgaac
cacgtcggagggactgccgagcaccccctggcccgccgagtgcgcagtgaccccgggggt
ggaaccctgagctaccccggcaacgcgctggccgccggcatcgccaacctctcgggctcc
cacctccccggggtgccgtccgactcctcggcctcctccacctccagctcctcgtccagc
tcctcctcggggaccagcaggaagggcagccgggactgctcggtgtgctttgagagtgaa
gtcatcgcggcgctggtcccctgtggccacaacctgttctgcatggagtgcgccaatcgc
atctgtgacaaacatgagcccaaatgccctgtctgcctctcagccgttactcaggctata
cgtatattttcataa
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integrated database retrieval system