Clupea harengus (Atlantic herring): 105891105
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Entry
105891105 CDS
T09045
Symbol
zswim6
Name
(RefSeq) zinc finger SWIM domain-containing protein 6 isoform X1
KO
K25704
zinc finger SWIM domain-containing protein 6
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
char03037
]
105891105 (zswim6)
Cilium and associated proteins [BR:
char03037
]
Other cilia and associated proteins
Stereociliary proteins
105891105 (zswim6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
DUF6247
Motif
Other DBs
NCBI-GeneID:
105891105
NCBI-ProteinID:
XP_012672701
Ensembl:
ENSCHAG00000020814
UniProt:
A0A6P3VJ52
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Position
12:15358599..15411262
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AA seq
1128 aa
AA seq
DB search
MAERVQQPPAKRLCCRPGYNTTCRQGQRAGGTVCGGSGTGQGGSSKTQSPESLLDIAARK
VAEKWPFQRVEERFERIPEPVQRRIVYWSFPRSEREICMYSSFNTGGDETTASGENSDET
RLPFRRGIALLESGCVDNVLQVGFHLSGTVTEPATPSEPEVVCSVAISFDRCKITSVTCG
CGNKDIFYCAHVVALSLYRVRRPEQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVL
PTAQKLADEILSQNSEINQVHGAPDPTAGASVDDENCWHLDEEQVQEQVKLFLSQGGYHG
SGKQLNLLFSKVREMLKMRDSNGARMLTLITEQFMGDPRLALWRQQGTSMTDKYRLLWDE
LGALWMCIVLNPHCKAEQKAGWLRQLKKWNSVDVCPWEDGNHGNELPNLTNALPQGAHGN
QDPGRPHRTVFTRAIEACDLHWQDSHLQHIISEDLYTNYCYHDNTDSSLFDCRGWPLWHE
HVPTACARVDALRSHGYPREALRLAIAIVNTLRRQQQKQLELFRNHKKDLLHKGFTSITN
PEGWVGHPLDPIGTLFSTLVDTGREDEGEVSGSTGSTKCSETSHLLASSSQLFLEEGESF
VALAVETALVGLGQQRSMPDGLYSQEKVCRNEEHLIAKLQEVDLDDALVNIFRKQAVFLL
EGGPYSGLGELVYRESVPMHTFAKYLFTSLLPHDAELAYKIALRAMRLPVLESTAPSGDL
SRPHHIVSVVPNRYPRWFTLSHIESQQCELASTMLTAAKGDGRRLETVLESIQKNIHTSS
HIFKLAQDAFKIATLMDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATE
VGVYALDSIMQSWFTLFTPTEATSIVATTVMSNSTIVRLHLDCHQQEKLAGSARTLALQC
AMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYTQLFTIARYMEHRGYPMRAY
KLATLAMAHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDI
LRRCTLTTPGMVALHSRRNSGKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYSE
FIEFLSKARETFLMAHDGHIQFTQFIDNLKQIYKGKKKLMMLVRERFG
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcgcgttcagcagcccccagctaaacggctctgctgccgacccgggtataac
acgacatgcagacaaggccaacgggccggtggaaccgtatgtggcggctcgggtactggc
caagggggatccagcaagacccagagcccggaatctctgttggacatcgcggctaggaaa
gtagcggagaagtggccgttccaaagggtggaggagcgtttcgaaaggatcccagaacct
gttcaaagaaggatcgtctactggtctttccccaggagcgaacgggagatctgcatgtac
tcctcattcaatacaggcggagatgagactacggccagcggtgagaacagcgacgagaca
cggctgcctttccgccggggcatcgctctactggagagtggctgtgtggacaacgtattg
caagtcggctttcatctcagtggtaccgtcacagagccggcgacaccgtcggaaccggag
gtggtgtgcagcgtagccattagcttcgaccgctgtaagatcacctcggtgacatgcggc
tgcggcaacaaggacatcttctactgcgcccacgtagtggcgctctcactgtaccgcgta
cggcggcccgagcaggtcaaactgcacctgcccatctcggagacactcttccagatgaac
cgggaccagctgcagaagtttgtgcagtacctcatcactgtgcaccacaccgaggtgctg
cccaccgcccagaagctcgccgatgagatcctctcacagaactccgagatcaaccaagtt
catggggctccggaccccacagccggagccagcgtggacgatgaaaactgctggcacttg
gacgaagagcaggtccaggagcaggtcaagctcttcctgtcccagggaggctaccacggc
tcgggcaagcagctcaacctgctcttctccaaggtgcgcgagatgctgaagatgcgtgac
tccaatggtgcgcgtatgctcaccctcatcacggagcagttcatgggcgaccctcggcta
gcactctggaggcagcagggcaccagcatgactgacaagtaccgcctgctctgggacgag
ctcggtgcgttgtggatgtgcattgtgctgaacccccactgtaaggcggagcagaaggcc
ggctggctccggcagctcaagaagtggaacagcgtggacgtgtgcccctgggaggacggt
aaccacggcaacgagctgcccaatttaaccaacgccttgcctcagggcgcccacgggaac
caagatccaggccggccccaccggacggtgttcacacgggcgatcgaggcgtgtgacctc
cactggcaggacagtcacctgcagcacatcatcagcgaggacctctacaccaactactgt
taccatgacaacactgacagctcgctcttcgactgccgtggctggcccctgtggcacgag
cacgtccccacagcatgtgcacgagtggatgctcttcggtcccacggctaccccagagag
gcactgcgattagccatcgccatcgtcaacacgttacgaagacaacagcagaaacagctg
gagctctttcgaaatcacaaaaaagacctgctccataaagggttcacgtccatcaccaac
cctgaggggtgggtggggcaccccctagaccccatcggaactctctttagcaccctcgtg
gacaccggccgagaagatgaaggggaggtctcaggctccacgggttccacaaagtgttcg
gagacgtcgcacctgctcgcgtcatcgtcgcagctgttcctggaggagggcgagtcgttt
gtggcgctggcggtggagacggcgctggtgggcctgggtcaacagaggagcatgcccgac
ggcctctactcccaggagaaggtctgccgcaatgaggagcaccttatcgccaagctgcag
gaggtggacctggacgatgcacttgtcaatatattccgcaagcaagcagtcttcctatta
gaagggggaccgtacagtggtctaggggaactggtctacagagagagtgttccaatgcac
acttttgccaagtatctcttcacctctctcctacctcacgacgctgaactggcatataaa
attgcactgcgagcaatgcggttaccagtattggaatccacagctccctccggcgacctg
tcccggcctcaccacatagtatcggtggtgccaaaccgctacccccgctggttcacgctc
agccacatcgagtcgcaacagtgcgagctggcctccaccatgctcaccgcagccaaaggt
gacggccggcggttagaaacagtattagagtccatacagaaaaacatccacacctcgtcg
catatcttcaaactggcgcaggatgccttcaagatcgccactctcatggacagcctgcct
gatatcaccttactcaaagtatccctggagctaggacttcaggtaatgagaatgacactt
tcaacgttaaattggagaaggcgggaaatggtacggtggctggtgacctgtgccacagaa
gttggggtctatgcactggacagcatcatgcagagctggttcaccctcttcacaccaacg
gaggccacgagcatcgtggcgaccaccgtcatgtccaacagcaccatcgtgcgcctgcac
ctggactgccaccagcaggagaaactggcaggcagcgcgcggacgctggcgctgcagtgc
gccatgaaggacccgcagaactgcgctctctccgccctcacgctctgcgagaaggaccac
atcgccttcgagacggcctaccagatcgtgctcgacgccgccaccaccggcatgagctac
acgcagctcttcaccatcgcccgctacatggagcaccgcggctaccccatgcgcgcttac
aagctggccacgttggccatggctcacctcaacctgagctacaaccaggacacgcacccg
gccatcaacgacgtgctgtgggcctgcgcgctcagccactcgttgggtaagaacgagctg
gccgccatcatcccgctggtggtcaagagcgtcaagtgcgccacggtgctctcggacatc
ctacgccggtgcacgctcaccacgccgggaatggtggcgctgcacagccggcggaactcg
ggcaagctgatgtcgctggacaaggcgccgctgcgccagctgctggacgccaccatcggc
gcctacatcaacaccacgcactcacggctcacacacatcagcccgcgccactacagcgag
ttcatcgagttcctcagcaaggcgcgcgagactttcctaatggcacacgacggacacatc
cagttcacgcagttcatagacaacctgaaacagatctacaaaggcaaaaagaaactgatg
atgctggttcgagagcggtttggttaa
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