Clupea harengus (Atlantic herring): 105891208
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Entry
105891208 CDS
T09045
Symbol
jmjd1cb
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
105891208 (jmjd1cb)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
105891208 (jmjd1cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
zf-C5HC2
FYVE
C1_2
Motif
Other DBs
NCBI-GeneID:
105891208
NCBI-ProteinID:
XP_031416744
Ensembl:
ENSCHAG00000024226
UniProt:
A0A6P8EWQ5
LinkDB
All DBs
Position
23:15027152..15172422
Genome browser
AA seq
2740 aa
AA seq
DB search
MAVEARPELVGKRFLCVSGEEPLELGEIGRWGWRAGVIRAVSHRDTDNAELTVYVEFDDQ
EWEKREWVKVYEDFRIFLVEHQLVWAKRREGSQLQVAKAKHVQWPALTFKPLEGKVVLGS
ITAVEFFSDRRLDFLSDDGAYQPYQDEADSLSPVLRDNPQLHEEVKAWVKDLKVQEIFMQ
GPYSLNGYRVRVYRQDSATQWFTGIITHHDLFSRTMVVMNDQVLEPQNVDPSMVQMTFLD
DVVHSLLKGENIGITCRRRSRSSQNNSTAHTSGGRPTTSAGGTQGHYTRAQANSPRPVMN
SSSSTPKQVGQSQQQQQQLSQQTQQQPSLQHQQQQQQPQSSPGQQRGSRSSRRKGSDSSV
PDDDSNKVKEEKPDVVATRGDFTSKSKSKQTASRRRKVEEDEKKNSALKRLKTEASDQSE
SSDSENSQRRGRASADSSSSSSASSSSSEPSSENELRAKIVKEEAVSPGEQQSSRTQEEE
REQREREREQALIGRLSPWEDLRLEEKSSKAAAVAVETLQLAEVERERRDERRSPRSPRL
PHPSAPTPVSTETQGSGGGCIVDMRSTVRSPSKDHYSLTGLPPQRTQTPKQTLSCVIDIT
EDGGGTQPSSRESLEAVSALLASQKAERHTPEPRHMVLTPTPSDLRKGESEQQQQQQQQQ
QQQQQQHHHLHHHHLHQPQVVRSQGAKLEFSHLEVIRPLTSVSESAAALAEREKVSAQQY
AAIVPSCIKSAAVAEETRRPQRPSPSPDATKARPHPNPSPELHKPLRPHPNVSPDVPKSK
PYGIMEASKPRPNTCPEVSKHKARHPDAPTPNNTPPSSGRICKSEPPASPSPSPRSCFKP
VPTRCEPTKSPLIFDKNEHFTVYRDPALIRPEAEPASAAANHVAYLHPHLHALHGSSHAT
CLTPSSHHPSHLLAPSSINPHAAPPPQHHSVHHSHMLSGVLPGMSPHPQSSILGGHARVD
SGGLGHLALAAAAHHHPHQHPHQHQHQHQHQHQHQHQQQQQQQFLQQQASALMPQHQGPG
GPSYNQLGLYPIIWQYPNGNHHTYPPGLGLASSNWVHAGENQVNSENSLRRNTPSPWLHQ
HTPVSSADGLGLLSHVPGRPASADPHRPIKMSSHASPPLSKSVGDYHKEELEKKVFGDSM
RSLATAHLKQEPDRSRTPTGKELHRGYLDPPQKTSRMVPTPDASERASKYKEENRRILQE
SIEVAPFTAKLRPGESERESYPRVPQPLPTSAVAPPASKSHAPSAPERDPEQRPASASEL
YKFKPAAQQQSNYFTTLSNSVVNEPPRLYPSKELNSYFDKVAGPPSASSSPLSLVYGASK
SLSKPPPLIKHQPEGEGLVSKITEQLSQQAAALHPLSSPQGGEPRRSPALSSPGQLRMPA
LHRAPVFHPPTQQTLDRKDAANYGRLSPPTLTPIQPVSVAGKLPEQQKPPTLLPELREVK
SGVELGGAEPWRVGDAPGYDRGVWLGEKSRTKPQGATASVIVRQSTCIKASGREPEVGKP
FLGNSQADGVKLAETRDTGRVILPNTNLEEACAQYKKSMIRASQAGVPSPIVSLANSVCN
SRTDVTTSAPSAPFNVLNRSGSELCFPISMNANAHANAHAHANVNTSSRTDSSTPKPRLL
AGAEVQEGGGSRTTSPNTLPSSGTASPAQVSPGQAYPGNFIHLKKHKAALAAAQSRGSGT
PESDRPQQGPPAPTQDAGAAAAPPPITNAAGKAAPMPNGQSVPPLSQPNYHKLKKAWLTR
HSEEDRNTNRPDKPCSASPVTPPLEIIKPCTVSLIASTSGETDSGKVGETNSEDGNNKSS
PEDRRTRRGSKRAYESGSESGEDTDGSENSKMDQRAKRQPKPTYKKKQNDMQRRKEDDEN
KPNVIFRSAREKTKLKLASSNGIPRSVLKDWRKVKKLKQTGESFLQDDSCSEIGPNLQKC
RECRVVRSKKGDEPAHSPVFCRFYYFRRLSYSKNGVIRIDGFSSPDQYDDEAVSLWAPDM
YEENELDLETSKYILSFIGDKFCQLVVTENMAATWIKKDAKIAWKRAVRGVREMCDACEA
TLFNIHWVCNKCGFVVCLDCYKAKERKSSKDKELYAWLKCVKGQPHDHKHLMPTQIIPGT
VLTDLVNAMHTLREKCGIRAHCVCAASKQTALLGKLPSTNGVSQVLQNVLNHSNKIALCK
PECPPSNATPKLETNGGGAVSPASDTSSDPKLTPPESQSPLHFLADLAEQKSREEKKENK
ATLGKSVKEEVGEAVEALHCKATSLVSTGSEQGSTLRDLLTTTAGKLRLGSTDAGIAFAP
VYSAASQTGKSGRSMPNILDDIIASVVENKIPASRGAKLALKQEPIAEEPRGPERKKPPA
IPDEPPAPKLHADTPHCWLYGQKMLWLKDHRNSGNWKLFRECWKQGQPVLVSGVHKKLNA
SLWKAESFNQEFADHQGDLLNCKDSVVVSNSGIKEFWDGFEDLTKRPKSKDGEPMVYRLK
DWPSGEEFMALMPSRYDDLMKNLPLPEYSDPEGNLNLASHLPSFFVRPDLGPRLCCAYGV
AASQEQDFGTANLHMEVSDIVSVLVYVGVAKGNGVLSKTGVLKRLEEEDLDDQVKRRLKD
SSETPGALWHIYVSKDVDKIKEFLHKVAKEQGVEMPAEHDPLREQGWYLTRKLRQRLLQE
HGVQGWTVVQFLGDSVLIPAGALHQVQNLHSCVQVINDFVSPEHVVHSFRLTQELRSSRE
EINYEDKLQVKNIFYHCVKNAVGTLKRCCAEELEEEEENS
NT seq
8223 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaagcgcggccggagctggttgggaagcggttcctgtgtgtcagcggtgag
gagccgcttgagctcggggagatcggacgctggggatggcgagccggggtcatccgtgca
gtatctcaccgcgacaccgacaatgctgagttgacggtctacgtggagtttgacgaccag
gagtgggagaagcgcgagtgggtgaaggtgtacgaggacttccggatctttctggtggag
caccagctggtgtgggcaaagcggcgcgagggatctcagctgcaggtggccaaagccaag
cacgtccagtggcccgcgctgacgttcaagccccttgaggggaaggtggtgctgggctcc
atcacagctgtggagttcttctccgaccgccgactcgacttcctgagcgacgacggagcc
taccagccctatcaggatgaagcggacagcttgagtcctgttctcagggacaacccgcag
cttcatgaagaagtgaaagcctgggtcaaagacctaaaggttcaggaaatttttatgcaa
ggtccctactcgttaaatggctaccgagtgcgcgtttacagacaggactcggccactcag
tggtttacaggcatcatcacccaccacgatctctttagtcgcactatggtggtgatgaac
gatcaggtactagagcctcagaatgtggacccctctatggtacagatgacttttcttgat
gacgtcgtccactctttgctgaaaggagagaacataggcatcacgtgcaggcgcaggtct
cgctctagccagaacaacagtacagcccacacgtcaggagggagacccaccaccagcgca
ggaggcactcagggtcactacacccgcgcccaggccaacagccctagacccgtcatgaac
tcgtctagctccacccccaagcaggttggccaatcccagcagcagcagcagcagctatcc
caacagacccagcaacagccatcccttcagcaccagcagcagcagcaacagccgcagtcg
tcgccggggcaacagcgaggctcgcgctcctcgcgccgcaagggctcggacagcagcgtc
cccgacgacgacagcaacaaggtcaaagaggagaagcccgacgtcgtcgcgacacgagga
gacttcacctccaagagcaaaagcaagcagacggcgagccggaggcggaaggtggaggag
gacgagaagaagaacagtgcactgaaacgtctgaaaactgaggcctcagaccagtcggag
agcagcgactccgagaactcgcagaggagaggacgcgcctcggctgactcttcctcctcc
tcttccgcctcatcttcttcctcggagcccagctcggagaacgagctgagggcgaagatc
gtgaaggaggaggcggtgtctccaggggaacagcaatcctccaggactcaggaggaggag
agggagcagcgggagagggagcgagagcaggctctgattggtcggctgtcgccgtgggag
gatctccgtctggaggagaagagcagcaaagcggcggcggttgccgtagagacactgcag
ctggccgaggtcgagagggagcggcgggacgagaggaggtctccacggtcgccacggctg
ccgcatcccagcgccccaacccctgtctccacggaaacgcaaggcagcggcggtgggtgc
attgtggatatgaggagcacagtgaggagcccatccaaggaccactacagcctgacaggg
ctgcctccgcagcgcacgcagacgcccaagcagacactgtcatgcgtcatcgacatcacg
gaggacggtggtggaacgcaacccagctcgcgggagagcttggaggccgtgtctgccctg
cttgcgtcccagaaggccgagcggcacacacctgagcccagacacatggtgctaaccccc
accccatcagacctcaggaaaggggagagcgaacaacagcagcagcagcagcagcaacag
cagcagcaacagcagcaacatcatcatctccaccaccaccacctccaccagccacaggtg
gtgcgtagtcaaggtgctaagctcgagttcagccacctggaggtgatccgacctttgacc
tccgtgagcgagtcggcggcagcgctggcagagcgggagaaggtttcggcacagcagtac
gccgccatcgtgccgtcctgcatcaagagtgccgccgttgccgaggagacacgccggccg
cagaggccgagcccgtcgccggacgccaccaaggcgcggccgcaccccaacccctcgccc
gagctccacaaacctctccgcccgcaccccaacgtctccccggatgtccccaaatccaag
ccctacggcatcatggaggcgtccaaaccgcgccccaacacgtgtccagaggtgtccaag
cacaaagcgagacacccggacgccccgacccccaacaacaccccgccctcgtcgggccgc
atctgcaagagcgagccccccgcttcaccctccccgtccccgcgctcctgcttcaagccg
gtcccgacccgctgtgaacccaccaagagccccctcatcttcgataagaatgagcacttc
accgtctaccgcgacccggcactgattcggcccgaagccgagcccgcgtctgcagccgcc
aatcacgtggcttacttacacccccacctgcacgccctccacggctcctcccacgccacc
tgcctcacgcccagctcgcaccacccctcccacctcctcgcgccctcctccatcaacccg
cacgcggcccctcctcctcagcaccactctgtgcaccactcgcacatgctttccggcgtg
ctccccggcatgtccccgcatccgcagtcctcgatcctggggggccatgcgcgggtggac
tcgggggggctggggcacctggcgttggcggcagcggcccaccaccacccgcaccaacac
ccgcaccaacatcaacaccaacatcaacaccaacaccagcaccagcaccagcagcagcag
cagcagcagttcctgcagcagcaggcgtccgcgctcatgccacagcaccagggacccggc
gggccgtcctacaaccagctgggcctgtaccccatcatctggcagtaccccaacggcaac
caccacacctacccgccgggcctcggcctggcatcctccaattgggtgcacgcgggcgag
aaccaggtcaactcggagaacagtcttaggaggaacacgcccagcccctggctccaccag
cacaccccggtgtcctcggccgacggcctgggtctcctgagtcacgtcccgggcaggcca
gccagcgccgacccccaccgccccatcaagatgagctcccacgccagccccccactctcc
aaaagcgtcggagactaccacaaagaggaactggagaagaaggtctttggcgactccatg
cgtagcctagcaacggcccacctgaaacaagagccggaccgcagccgcacaccgacgggg
aaggagctccaccgtggctacctggacccgccgcagaaaacgtcccgtatggttccaacg
ccggacgcctcagaacgcgccagcaagtacaaggaggagaaccggcgcatcctgcaggag
agcatcgaggtggcgcccttcaccgccaagcttcggccaggcgagtccgagcgcgagtcg
tacccccgcgtgccccaacctctccccacctcggctgtggcccccccagcctctaaatcc
cacgccccgtcggcccccgagagggaccccgagcagcgcccggcctcggcctcggaactc
tataaattcaagccggccgcgcagcagcagagcaactacttcaccaccttgtccaacagt
gtggtgaacgagccgcctcgcctctacccctccaaagagctgaactcatactttgacaag
gtggcaggccccccctcggcctcctccagccccctgtccctcgtgtatggggcctccaag
tccctctcgaagcccccacctcttattaagcaccagccagaaggggagggcctggtgagc
aagattacggagcagctatcccagcaggctgcggcgctgcaccccctaagcagcccgcag
ggcggggagcctcgtcggagccccgctctttcatcccctggtcagctgcgcatgcctgcg
ttgcaccgagcgccagtttttcacccgccgacccagcagactctcgaccgcaaggacgcg
gccaactacgggcgcctctcccctcccacgctcacccccatccagccggtcagcgtggcc
gggaaacttccggaacagcagaagccacccacactgctgcccgagctaagggaggtgaag
agcggggtggagctgggtggggcggagccatggcgtgttggcgacgcccctggatacgat
agaggggtgtggcttggcgaaaagagccggaccaagcctcagggcgccaccgcgtccgtt
atcgtgcggcagtctacctgcatcaaggcctcgggcagggagcctgaggtcgggaagcca
ttcttgggcaattctcaggcagacggtgtaaaactggctgagaccagggacactggcaga
gtcattctgcccaacaccaacctggaggaagcctgtgcgcagtacaagaagagcatgatc
cgagcttcgcaggctggcgttcccagccccattgtgtcgttggccaactctgtgtgcaat
tcccgaactgatgtgaccacttctgccccctccgcccccttcaacgtcttgaaccgcagt
ggctcggagctctgtttccccattagcatgaatgctaacgcgcatgctaatgctcatgct
catgctaatgttaacaccagcagcaggactgatagctccacgcccaaaccgaggcttctt
gctggggctgaggtgcaggagggtgggggctccaggaccacctcccccaacacgctcccc
tcctctggcacagcctccccagcgcaggtgtcccccgggcaagcgtaccccgggaacttc
atccacctaaagaagcacaaggcagcgctggccgcagcacagtcgaggggttcgggaacc
cccgaaagcgaccgaccccagcagggcccgcctgccccaacgcaggacgccggtgcagcg
gcggcaccgccacccatcaccaacgcagcgggcaaagctgcccccatgcccaacgggcag
tcagtgccgcctctcagccagcccaactatcacaaactgaagaaggcgtggctcacgcgg
cactcggaggaggacagaaacaccaaccggcccgacaaaccttgcagcgcctcgccggtc
accccgcccctggagatcatcaagccctgcaccgtcagcctgatcgcatccacctccggc
gagaccgactctggtaaagtgggggaaactaactccgaggacggcaacaacaagtcgagc
ccggaggaccggcgaacgcgccgcggctccaagcgggcctacgagtcgggctcggagagc
ggcgaggacacggacggcagcgagaacagcaagatggaccagcgtgccaagcgccagccc
aagcccacctacaagaagaagcagaacgacatgcaacgacggaaggaggacgacgagaac
aagcccaacgttatattccgcagcgcccgggaaaagactaaacttaagctggccagcagc
aacggtattccgcggtcggtgctgaaagactggcgcaaggtgaagaagctgaagcagaca
ggagagtcgttcctgcaggacgactcgtgctcggagatcggccccaacctgcagaagtgc
cgcgaatgccgagtggtgcgcagcaagaagggcgatgagcccgcccactcgcccgtcttc
tgccgcttctactacttccgccggctctcgtacagtaagaacggagtgatccgcattgac
gggttctcgtccccggaccaatacgacgacgaggcggtgagcctgtgggctccggacatg
tacgaggagaacgagctggacctggaaacctccaagtatatcctcagcttcatcggagac
aagttctgccagcttgttgtgaccgagaacatggccgccacctggatcaaaaaagatgct
aagatagcgtggaagcgtgcggtgcgtggcgtgcgggagatgtgcgacgcctgcgaggcc
acgctcttcaacatccactgggtgtgcaataagtgcggcttcgtcgtctgcctggactgc
tacaaggccaaggagaggaagagctccaaagacaaagagctgtatgcctggctgaagtgt
gtgaaggggcaacctcacgaccacaagcacctgatgcccacgcagattatccccgggacg
gtgctgacagacctggtgaatgccatgcacaccctgagggagaagtgtggcatccgtgcc
cactgtgtttgtgccgctagcaagcagacagccctgctgggcaaactgccctccaccaac
ggagtttcccaggtgctacagaatgtgctgaaccatagcaacaagatcgcgctgtgtaag
ccagagtgcccgccctcaaacgccacgcccaagctggagaccaatggcggcggagcagtg
agcccggccagtgacaccagcagcgatcccaagctcaccccgcccgagtcccagtcccca
ctgcacttcctggccgacctggcagagcagaagtcccgcgaggagaagaaagagaataag
gcgacgctggggaagagtgtgaaggaggaggtgggggaggccgtggaggcgctgcactgt
aaagccacgtctctggtgtcgaccggcagcgagcagggctccaccctcagggacctgctc
accaccaccgccggcaagctccgcctgggctccaccgacgccggcatcgccttcgcaccc
gtctactccgcagcctcgcagaccggcaagagcggccgcagcatgcccaacatcctggat
gacatcatcgcctcggtggtggaaaacaagatcccggcgagccgcggggccaagttggcc
ctgaagcaggagcccattgccgaggaaccccgaggccccgagcgcaagaagcctccagcg
atcccggacgagcccccggcgcccaagctccacgcggacacccctcactgctggctctac
ggccagaagatgctctggctcaaagaccaccgcaactctggcaactggaagctgttccgt
gagtgctggaagcaaggccagcctgtgctggtgtctggagtgcataagaagctgaacgcc
agcctgtggaaggccgaatccttcaaccaggagtttgctgaccaccaaggggacctcctc
aactgcaaggacagcgtggtcgtctccaactcaggcatcaaggagttctgggatggcttc
gaggatctaacgaaacggcccaaatcgaaggacggggagcccatggtgtaccggctcaag
gactggccttcaggagaggagttcatggccctcatgccatcaaggtatgatgacctgatg
aagaacttacccctgcctgagtactcagaccctgaagggaacctcaacctggcctcccat
ctgccctccttttttgtgcggccggacctggggccccgactgtgctgtgcatacggagtg
gccgcttcccaggagcaggacttcggcacggccaacctgcacatggaggtgtccgacatc
gtcagcgtgctggtctacgtgggcgtggccaaaggcaacggcgtcctctccaaaacaggt
gttttgaagcggctggaggaggaggatctagacgaccaggtgaagaggcgtcttaaggac
tcgagcgagacgcccggggcgctatggcacatctacgtcagcaaggatgtggacaagatc
aaagagttcctgcacaaggtggctaaggagcagggtgtggaaatgccggcggagcacgac
cctctccgtgagcaaggctggtacctgacacggaagctgcgccagcggctgctgcaggag
cacggcgtgcagggctggaccgtggtgcagttcctgggagactccgtcctcatccccgcc
ggagcactgcaccaggtgcagaacctgcacagctgtgtccaggtgatcaacgactttgtg
tccccggagcacgtggtgcactccttccgcctcacccaggagctgcgctcctccagagag
gaaatcaactatgaagataagctacaggtcaagaacatcttctaccactgtgtgaagaac
gccgtgggaacactgaaacggtgctgcgccgaagagctggaggaagaagaggagaactcg
tga
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integrated database retrieval system
