Clupea harengus (Atlantic herring): 105891225
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Entry
105891225 CDS
T09045
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 1 isoform X1
KO
K17908
autophagy-related protein 18
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04136
Autophagy - other
char04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105891225
04136 Autophagy - other
105891225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105891225
03029 Mitochondrial biogenesis [BR:
char03029
]
105891225
Membrane trafficking [BR:
char04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
105891225
Mitochondrial biogenesis [BR:
char03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
105891225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WD40
WD40_WDHD1_1st
WD40_Prp19
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR19_1st
Beta-prop_Vps41
BCAS3_WD40
DUF5711
EIF3I
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
105891225
NCBI-ProteinID:
XP_012672845
UniProt:
A0A6P3VJ53
LinkDB
All DBs
Position
23:complement(14678970..14686359)
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AA seq
461 aa
AA seq
DB search
MIEPVPACRSGDEGGISGVEQDCEEMSDEPTGVQGLVCASFNQDSTSLAVGTRDGYRLFS
LASVDKLNCIHEGGESPDVYIVERLFSSSLVVVVSRSMPRRMNIYHFKKGTEICNYSYST
DILAVKLNRQRLVVCLEESIYIHNIKDMKLLKSLLNTPLNRTGLCALSVNHSNSYLAYPG
STSIGEIAVYDTNSLSNIIEIPAHDSPLAAMSFNIQGTMLASASEKGTVIRVFSIPDGLR
LFEFRRGMKRYVSISSLSFSVDGQFLCASSNTETVHIFKLEHHSTSVEEDPATWSAYVGK
VFTAASTYLPAQVSDMMHQDRAFATVRLNMFGLRNICTLAIIQKLPRLLVASSDGYFYIY
NVDPQDGGECVLVNKHRLFNGEEEEEEQPPLEEDPMGGGQTYASTLATPACVEHPASAGL
TGYSEDGGAKKGDIIPEHEFAAGTIRLDDEQEFPPVSSQSN
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacctgtccccgcttgccgttcgggggacgagggtggtatatcaggagtggag
caagactgtgaagagatgtccgatgaacccacgggagtacaggggcttgtgtgcgcctcc
ttcaatcaggactccacgtctttagctgttggcaccagagatggctatcgactcttttct
ttggcgtctgtggacaaactgaattgcattcatgaaggtggtgagagtcctgatgtgtac
atcgtggagcgtctcttctccagcagtctggtggtggtggtgagtcgctccatgccgcgc
cgcatgaacatctaccacttcaagaagggcacggagatctgcaactacagctactccacc
gacatcctggcggtcaagcttaaccggcagagactggtggtttgcctagaagagtctatc
tatattcacaacatcaaggacatgaaactgctgaaatctctgctcaacacaccactaaac
cgcaccggtctatgtgcactgtccgtaaaccattccaattcttacctggcctaccctggg
agtaccagtatcggggagatcgctgtctatgacaccaacagcctgagcaacataattgag
atcccagctcacgacagtcctctggcagcaatgtcttttaacatccagggcaccatgctg
gccagtgcttcagaaaagggcacagtcatcagagtgttcagcattcctgatggcctgagg
ctgtttgagtttcgaagagggatgaagaggtatgtcagcatcagctccctgtccttcagt
gttgatggacagttcctgtgcgcttccagtaacacagagacggtgcacatctttaaattg
gaacaccacagcaccagcgtggaggaggacccggctacctggtctgcgtacgtgggtaag
gtgttcaccgccgccagcacctacctgcccgcccaggtatccgacatgatgcatcaggac
cgggctttcgccactgtccgtctcaacatgtttggcctgaggaacatctgcaccctggcc
atcatccagaagcttccccgcctgctggtggcttcctcagatggctacttctacatttac
aacgttgaccctcaggacggcggggagtgtgtgctggtaaacaaacacaggctcttcaat
ggtgaggaggaggaggaggagcagccacctctggaggaggaccccatgggcgggggacag
acttatgcatccaccctcgccacgcccgcctgcgtggagcatccagcctccgccggcctc
acaggttactcagaagatggaggagccaaaaagggtgatatcatccctgaacatgagttt
gctgctggaaccatccgattggatgacgagcaggagttcccaccagtcagctcccaaagc
aactaa
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