Clupea harengus (Atlantic herring): 105891287
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Entry
105891287 CDS
T09045
Symbol
rb1cc1
Name
(RefSeq) LOW QUALITY PROTEIN: RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105891287 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
char01009
]
105891287 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105891287 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
char03029
]
105891287 (rb1cc1)
Protein phosphatases and associated proteins [BR:
char01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105891287 (rb1cc1)
Membrane trafficking [BR:
char04131
]
Autophagy
Autophagosome formation proteins
ULK complex
105891287 (rb1cc1)
Mitochondrial biogenesis [BR:
char03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
105891287 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
105891287
NCBI-ProteinID:
XP_031418640
Ensembl:
ENSCHAG00000010136
UniProt:
A0A6P8F3S4
LinkDB
All DBs
Position
25:4797885..4822642
Genome browser
AA seq
1665 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVGDLKHAIQVKYKIATQHQVLVVNGGECMVADRRVC
SYSAGTETNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLLKFDAAYMNYQQ
DFEDIKIKLTKLGTAVSVMAKIPLLECLTRHSYRENLGKSSSPAQRPGGDEEEEEDDDEE
EERSAQSVTPRGTDALRSAPSFTAAGGASPQAADVSRGDGQMTDSSELKSAMQEADSPEK
GPCTGLSFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLGDCRDTIAKLDN
QNMKAIKGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQQRAENLKDTSVLPDLCLSH
ANQLMIMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLL
TELLERVRVVDALSTVPQMYCLAVVEVVRRKMFIRHYRAWAIALVKDGKRLYEAEKVKRE
TFGKLFRKSFLRNRLFRGLDSWPPLSFCTRKPRKFDFDLPDISLEDLQYLKSSCPYEVQP
FLRVPTLCDFEPLNRHVEMLHQLVQAAQSVDEMSQTITDLLSQQKTSGSQSAQRSSSSAP
RSESTTGTTPTSSSKTLSSLSIPPPGASQALLVPAVLEDLSPDSIDAHTFDFETIGHPNM
DPVLQQGSLDLDSLAESPESDFMSAVNEFVIEENLTSPNPISDPCSPEMMVESLYSSVIN
AIDSKRILDTTTLERENSRIATLRLCADRYRAAAEESQSNLRSVKDDLHHFRGLVAREQR
DFGFALKTMTVEVRDVVGRLRHCHEEEVREGHRSELESLKRDHEGQALSLSEELEASRGV
VRDVQRAMLELEGLVEHKEKDIAQLEGDRERALDELRSAHQHTLQDLERKMSEQAEEIKA
AQASRDELAKDLRQEMELTRETVCQEMREVEEERLRELEETLGQRQSARLEAEQREHRDA
LDRLAQEHQAQLQGQQELHGQQRTELESRLLELXARASELADVRCKLEVEMALKESETED
MRLQYEEAKVQQEEDLKGHVDAQTEELQHEVESLSRQLQQKNEEHEVGLAELRALMRREK
DHCISELVERHEEESITLRAEVAALQRSAEEAQREAEERLRRLLQERDEQEEERRQSSEE
QETQLTAQLSDLQAENMLLAERCQQGRLQEKEETEEAVRAALAEALRDFELQKEELEKRL
LEQIEVLEKQLQEGQSTDRVSFLEEPAEGSRGSTGAAVSLDTALQEQLHEKLTEENAALL
ARLEQLEHRKNEEVQTLKTSLIAEQQTNFNTVLTREKLKKEQIINELNDSSGKGPPEHWN
DLRFTAELVMGHAIGKAFSLPLNVVLNCAVSLSGLIETLSEDRASIMQEKKHLEEELNRL
RSGVLISSAYFHSSAAGTSAGTSSVCASGQGPSEPAGAVGGDLPLILQDPADPERLASVA
CLRDDERVDPAIDASMMTAHDNMLLLSEEKQRILMLERTLHMKEEENKRLSQRLMSQSMS
SVSSRHSEKIAIRDFQVGDLVLIILDERHENYVLFTVGPTLYFLHSESLSALDLKPALGA
SRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggaagcacacttacttttgatactgaactt
gccgtccaaacggtgggagatctcaaacatgccatccaggtcaaatacaagattgcaact
cagcaccaggtcctggtggtcaacggaggggagtgcatggttgcagatcgacgagtttgc
agctacagtgcaggcactgaaaccaaccccatcttcctgttcaataaggagatgattctg
tgtgaccgtgcccccaccatccccaagaccaccttctccatcgagaacgagatggagctg
aaggtggaggagtctctcatgatgccagcagtctttcacaccgttgcctcacgaacacaa
cttgcagtggaaatgtatgaagttgccaagaagctttgctccttctgtgaacgcctggta
catgatgaacatctgcagcaccaaggctgggccgctatcatggcaaacctcgatgactgc
acgctatcctatcaaaagctcctcttgaagtttgacgcagcttacatgaactatcagcaa
gactttgaggacatcaaaataaaacttaccaaactggggacggctgtatcagtcatggcc
aagattcctctgctggagtgcttgacccgtcacagctaccgcgagaacctggggaagtcc
agctcgcccgcgcagaggccagggggggatgaggaggaggaggaggacgacgacgaagag
gaggagcgctcggcccagtcggtcacgccccgcggcaccgacgcactgaggagcgctcct
tccttcaccgccgcgggcggagcttctccccaggcggcagacgtctcccgcggcgacgga
cagatgacggacagcagcgagctgaagtcggcgatgcaggaggcggactcgcccgagaag
gggccctgcaccggcctgtccttcaacgtcaccctactagactggatcaacgtccaggac
cggcccaatgacgtggagtcggtggtgcgcaagtgtttcgattccatcaacaggttggac
ccacgtatcattcagccattcttaggagattgccgggatacgattgccaaactggataat
cagaacatgaaggccatcaaagggctggaggaccgactgtatgccctcgaccaaatgatt
gcaagctgtaaaaagttagtcaatgaacagaaggaacttgctcagggatttctggccaat
cagcagagggctgaaaacctgaaggacacctctgtgctgccggacctgtgtctgagtcac
gcgaaccagctgatgatcatgctgaccaaccacaggaagctgctggatatcaaacagaag
tgcaccactgccaaacaggaactcgctaacaacctacaagtccgtctcaaatggtgctgc
tacgtcatgctccacgcggaccaggacggggagaagctgcaggcgctgctcaggctgctt
acggagctgctggagagggtgcgcgtggtggacgccctcagcaccgtcccccaaatgtac
tgcctggccgtggtggaggtggtcaggaggaagatgttcatcagacactacagagcgtgg
gccattgcacttgtgaaggatggaaaacgcctctatgaagctgaaaaggtcaagagggaa
acctttgggaagttattcaggaagtcattcctcagaaatcgtctgtttcgaggacttgat
tcatggcctcctctgtcattttgcactcgaaagcctcgcaagtttgattttgaccttcca
gacatctctcttgaggacctgcagtatctgaagtccagctgtccttacgaagttcagcct
ttcctcagggttcctacgctgtgtgactttgagcctttgaatcggcatgttgagatgctc
catcagttggtccaggctgctcaaagtgtagacgagatgtctcaaaccatcactgactta
ctaagccaacaaaagacttctggcagccagagtgcacagaggtcttcctcgtcggccccc
cgatcggaaagcacaacggggaccacgcctacctcctcctccaaaacactatcctccctc
agcatcccgccccccggcgccagccaagccctgcttgtccccgcggtcctggaggacctg
tcccccgacagcatagacgcccacaccttcgacttcgaaaccatcgggcaccccaacatg
gaccccgtcctgcagcagggctccctggacctggactccctcgccgagagccccgagtcg
gacttcatgtcggcggtgaacgagttcgtgatcgaggagaacctgacctcgccgaacccc
ataagcgacccctgcagccccgagatgatggtggagtcgctctactcgtccgtcatcaac
gccatcgacagcaagcgcatcctggacacgaccacgctggagcgggagaactcgcgcatc
gccacgctccggctgtgcgccgaccgctaccgggcggcggccgaggaatcccagagcaac
ctgaggagcgtgaaagacgacctgcaccacttccgcggactggtcgccagggagcagcgg
gacttcggcttcgccctgaagaccatgacggtggaggtgcgcgacgtcgtcggccgcctc
cgccactgccacgaggaggaggtccgcgagggccaccggagcgagctggagagcctgaag
cgggaccacgaggggcaggcgctctcgctcagcgaggagctggaggccagccgcggcgtc
gtgcgcgacgtgcagagggccatgctggagctggagggcctggtggagcacaaggagaag
gacatcgcccagctggagggcgaccgagagcgggcgctggacgagctccggagcgcccac
cagcacaccctccaggacctggagcgtaagatgtcggagcaggccgaggagatcaaagcc
gcccaggcctcccgagacgaactggcgaaggacctccggcaggagatggagctcacccgg
gagacggtgtgccaggagatgcgggaggtggaggaggagcgcctgcgggagctggaggag
actctgggccagcggcagagcgccaggctggaggccgagcagcgggagcaccgggacgct
ctggaccgcctggcccaggagcaccaggcccagctgcagggccagcaggagctccacggc
cagcagcggactgagctcgagagccggctcctggagctgnnggcccgcgcgtcggagctg
gcggacgtccgctgcaagctggaggtggagatggcactcaaggagtccgagaccgaggac
atgcggctccagtacgaggaggccaaggtgcagcaggaggaggacctgaagggccacgtg
gacgcgcagaccgaggagctgcagcacgaggtggagagcctgtcgcggcagctgcagcag
aagaacgaggagcacgaggtgggcctggccgagctgcgcgcgctcatgcgccgcgagaag
gaccactgcatatccgagctggtggagcggcacgaggaggagagcatcacgctccgcgcc
gaggtcgccgccctgcagcggagcgccgaggaggcgcagcgggaggccgaggagcggctg
aggaggctcctgcaggagcgggacgagcaggaggaggagcggaggcagagctccgaggag
caggagacgcagctgacggcgcagctcagcgacctgcaggcggagaacatgctcctggcc
gagaggtgccagcaggggaggctgcaggagaaggaggagacggaggaggccgtcagggcg
gcgctggccgaagccttaagagactttgaactccaaaaggaggagttggagaaaagactg
ttagaacaaattgaagtacttgaaaagcagctccaagagggacaatccactgacagggtg
tcattcttggaggagccagcggagggcagcagagggtcgacaggagcggcggtgtctctg
gacacggctctgcaggagcagctccacgagaagctgacggaagagaacgccgccctgctg
gccagactggagcagctcgagcaccgcaagaacgaggaggtgcagacactgaagacctcg
ctcatcgctgagcagcagactaatttcaacacggttctgacgcgtgagaaactgaagaag
gagcagatcatcaatgagctgaatgatagctccgggaaaggtccacccgagcactggaat
gatttaaggtttacagcagagttggtgatgggccatgccattggcaaggcattctctctg
cctctgaatgtggttctgaactgtgctgtgtccctgtcaggcctgatcgagacgctgtcg
gaggaccgcgcctccatcatgcaggagaagaagcacctggaggaggagctgaaccggctg
cgcagtggcgtcctcatctcctccgcctacttccactcctccgccgcgggcacctccgcg
ggcacctcctccgtctgcgcctccggccaaggcccctccgagcccgcgggcgccgtcggc
ggagacctgcccctcatcctccaggaccccgccgaccccgagaggctggcctcggtcgcc
tgtctccgtgacgacgagagggtggaccccgccatcgatgctagcatgatgacagcgcat
gataacatgctgctgctgtcggaggagaagcaacgcatcctcatgttggagcggactcta
cacatgaaggaggaggagaacaaacggctgagccagagactgatgtcccagagcatgtct
tcggtgtcttccagacattcagagaagattgctattcgagatttccaggtcggggacttg
gtgctgatcatcctggacgagcgccatgagaactacgttctcttcaccgtgggccccacc
ctctacttcctccactccgagtccctcagtgcactggacctcaaaccagcgctgggcgcc
tctcgaagaccttgggttcttgggaaagtcatggagaaggagtattgtcaagcgaagaag
gctcagaaccggttcaaggttcctcttggcaccaagttctacagagtgaaggcagtgccg
tggaacaagaaagtgtag
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integrated database retrieval system
