Clupea harengus (Atlantic herring): 105891294
Help
Entry
105891294 CDS
T09045
Name
(RefSeq) voltage-dependent R-type calcium channel subunit alpha-1E-like
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04010
MAPK signaling pathway
char04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105891294
04020 Calcium signaling pathway
105891294
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105891294
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
105891294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
105891294
NCBI-ProteinID:
XP_031418642
UniProt:
A0A6P8F6A7
LinkDB
All DBs
Position
25:5255386..5330596
Genome browser
AA seq
2443 aa
AA seq
DB search
MSQSGKMHAVSDGALSPRPDPSGPQQAGAASSVGEGTFHRSFLPLPEPEAWRMAGRQGLT
PGSRSCSLQVPPTVSGSVLLLLPRAATFDASYARDGALAGLSTPPLSPGGNMQRRGGIID
QRDVVRAHQAHKIQSTPQARRKEWEMARFGEDIPSVMEPGESATEPAADGQGDAESTGEM
KQAKAQRALTMAFYNPTPARQNCFTVNRSLFIFAENNLIRRCARRFIEWPPFEYMILATI
IANCIVLALEQHLPGEDKTPMAKRLEKTEPYFIGIFCFEFGIKLVALGFVFHKGSYLRNA
WNVMDFIVVLSGILATAGAHMNIPVDLRTLRACRVLRPLKLVSGIPSLQIVLKSIIKAMV
PLLQIGLLLFFAILMFAIIGLEFYSGKLHHTCQPVPHILENETVDSAEVEFACGVRKCPD
KYDCNGTWIGPNDGITQFDNILFAVLTVFQCITMEGWTAVLYNTNDALGSSFNWMYFIPL
IIIGSFFVLNLVLGVLSGEFAKERERVENRRAFMKLRRQQQVERELNGYRAWIDRAEEVM
LAEENKNSGRSALDVLKRATSKKNARRRGPGEDKYSEISTAGGSRPRVGIRTARRGPAAY
MRRKERMLRISIRRMVKTDSFYWVVLSLVALNTICVAIVHHNQPDWLTIFLYYAEFVFLG
LFLAEMFLKMYGLGFRLYFHSSFNCFDCGVIVGSIFEVVWGFFRPGVSFGISVLRALRLL
RIFKITKYWASLRNLVVSLMSSMKSIISLLFLLFLFIVVFALLGMQLFGGRFIFEDYTPA
NFDTFPAAIMTVFQILTGEDWNEVMYNGIRSQGGVKSGMWSSIYFIVLTLFGNYTLLNVF
LAIAVDNLANAQELTKDEEEEEEFFNQRFKGRELGLSETPAGLSRSDTSLACVTPAVVSV
CCELNTLMSCFHSFVTWASQECASVRRRRPYLYRKRAIHRGRPAPGEEEEESAPPIRGRG
HAAEEPPPNAPFGNRRGGRQKKSVWEQRTNQLRKRRQVASREELFGGGSSPTEDHLDTPA
GDHAPSLSPDTSPGHLPESPMSVAMAMPEPPMSNPLPEPPESEPLPLPMLPCVTEERSGA
GAGGGHRSNTERRHRVARKFRAAAVVAGMEGGGEGRHRRHRHREARSRDSPTQADGGDRK
TSESGGAEGVGQPEEGASQAERAGDGHSESMPDVLGLQAAPEDAEAQPLMESVQAGQEDD
GEAPSPDQQVAQEGGLELTENASSYLNQEEPPADSSVVIEMSGAQPLLELVPMTVGHPRK
TLAQRPQRVNFKDSDRGERDEEEGEEEEPNPPKPVAPDSMFIFKASNPLRRICHYAVTIR
YFEITILLVIVASSIALAAEDPVSTNSERNKVLRYFDYVFTGVFTFEMIIKMIDQGLILH
DGSYFRDPWNFLDFIVVVGALIAFALTNVMGNTKGRDIKTIKSLRVLRVLRPLKTIKRLP
KLKAVFDCVVTSLKNVFNILIVYKLFMFIFAVIAVQLFKGKFFYCNDASMNTEKECQGYY
IDYTRDRKEVKKREWRRHEFHYDNVAWALLTLFTVSTGEGWPQVLQHSVDVTDEDHGPSR
GNRMEMSVFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEECSLEKNERACIDFAISA
KPLTRYMPQNHKTFQYRIWHFVVSPSFENTVLVMIALNTVVLMLKYYSAPPAYDTVLKHL
NTAFTVLFSLECIMKIMAFGLVNYFRDTWNIFDFITVLGSITEIVVDLQSINTFNMSFLK
LFRTARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIKLND
ESHINQHNNFKYFSSALMLLFRSATGESWQEIMLSCLAGRECEPDLSIAPPFTSPDHEGG
CGTDFAYFYFVSFIFFSSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFVRVWGEFDR
AACGRITYNAMYEMLTHMPPPLGLGKKCPAKVAYRRLVLMNMPVDEDMSVHFSSTLMSLI
RTALEVKIARGGEDRLQLDTELQKEISIIWPHLSQKTLDLLVPINKDTDMTVGKIYASMM
IMDYFKQNKAKKLRRLAEEQKNSPTLPLVTHSAGSALTRGGFLALSPISPQELFIQPMTQ
NMEDSHSLVGEYKGFVGAALALSGRALFVRASSMPRLAVDAQVDVDTSVMKRSSSTVGEQ
GVNGLLREGSSPERVYRPRHKSYKAAVSRTDPWKQGEREKERGRSKERRHLLSPDTSRCT
SRCTSEDRSPQPRTRSPSPERPRPAIRQGNSSDSPVPSTSESSTPSVRRPSSQTPTRSRP
HISYSPLVCRTQASSLADGDGDDEDDGATQQTEVRVREASWDAGGEEEEEEEEEEAVKGG
GADTDRDSDDYVCAVPRRYPSEPYLALPDDEHSPDPSAPMETLTFEAAVATSLGRANTVS
ASVRTRSRLGWQIPNGHFRKRLAQSASTAGCPVLSDTEEDDKC
NT seq
7332 nt
NT seq
+upstream
nt +downstream
nt
atgagccagtctgggaagatgcacgctgtgtcagacggggccctctcccccaggccggac
cccagtggcccgcagcaggctggagccgcctcctccgttggcgagggcaccttccatcgc
tccttcctccccctgccggagcccgaggcctggcggatggccggtcggcagggcctgacc
ccagggtcgcgctcctgctccctccaggtgccgcccactgtctccgggagcgtgctgctg
ctgctcccgcgcgccgccaccttcgacgcctcgtacgcgcgggacggggcgctggcgggg
ctcagcacgccgcccctcagccccgggggcaacatgcagcgccgcgggggcatcatagac
cagcgagacgtggtgcgggcacaccaggcacacaagatccagagcacgccacaggcgcgc
aggaaagaatgggaaatggcccgttttggggaggacatacccagtgtgatggagcccgga
gagagtgccacggagcctgcagcggatggtcagggagacgcggaatcgacgggcgagatg
aaacaagccaaggcacagcgagctctcactatggccttttacaaccccactccagccaga
cagaactgcttcactgtcaacaggtcccttttcatttttgccgagaacaaccttatccgt
agatgtgcaaggcggttcatagaatggcctccgtttgagtacatgatcctggccaccatc
atagccaactgcatcgtgctggcactggagcagcacctgcctggggaggacaagacaccg
atggccaaacgactggagaagacggagccctatttcatcggcatcttctgcttcgagttc
gggatcaaactggtggcgctgggattcgtgttccacaagggctcctacctgcggaacgcc
tggaacgtcatggacttcatcgtggtgctcagcgggatcttggccacggcgggggctcac
atgaacatcccagtggacctgcggacgctgagggcgtgtcgggtgctgagacccctcaag
ctggtgtcggggatccccagcctgcagatcgtgctgaagtccatcatcaaggccatggtg
ccgctgctgcagatcggcctgctgctgttcttcgccatcctcatgttcgccatcatcggc
ctggagttctacagcggcaagctccaccacacctgccagccagtgccacacatcctcgaa
aatgagacggtggactcggcagaggtggagttcgcctgcggggtgaggaagtgtcccgat
aagtacgactgcaacggcacgtggatcggccccaacgacggcatcacgcagttcgacaac
atcctgttcgccgtgctcaccgtgttccagtgcatcaccatggagggctggacggccgtc
ctctacaacactaatgatgcgctgggctcctccttcaactggatgtacttcattccgctc
atcatcattggctccttctttgtgctgaacctggtgctgggagtcctgtctggagagttc
gctaaggagagggagcgtgtggagaatcggcgggccttcatgaagctgcgacgtcagcag
caggtggagagagagctcaatggctaccgcgcctggatagaccgagcagaggaagtgatg
ctcgccgaggagaataagaactctggaagatcggcgttagacgttcttaaacgagccact
agtaagaaaaatgcaaggcgtcggggaccaggagaggataaatactctgagatctccacc
gcgggtgggtctcggccgcgggtgggcatccgcacggcgcgccgcggcccggcggcgtac
atgaggcgcaaggagcgcatgctgcggatctccatccgccgcatggtgaagaccgactcc
ttctactgggtggtgctcagcctggtggccctcaacaccatctgcgtcgccatcgtccac
cacaaccagcccgactggctcaccatattcctgtactatgctgagtttgtgtttctggga
ctgtttcttgctgagatgttcctgaagatgtatggcctggggttccgactctatttccac
tcatcttttaactgttttgactgtggggtgatcgttggcagcatctttgaagtggtgtgg
ggattcttccgcccgggcgtgtccttcgggatcagcgtactcagggcacttcgactcttg
aggatcttcaaaataaccaagtactgggcgtccctcaggaacctggtggtgtctctcatg
agctccatgaagtccatcatcagcctgctcttcctcctcttcctcttcatcgtggtgttt
gctcttctgggcatgcagctcttcggtggcaggttcatctttgaagattacacccccgcc
aactttgacacatttccggctgccatcatgactgtctttcagatcctgaccggggaggac
tggaacgaggtgatgtacaacggcatccgctcccagggaggcgtgaagtccggcatgtgg
tcctccatctacttcatcgtgctcacgctgttcgggaactacactctgctaaatgtcttc
ttggctatcgcagtggacaatctggccaatgcacaggaactgacaaaggatgaagaggag
gaagaggagttcttcaaccagaggttcaaaggccgagaacttggcttgtctgagacccct
gcaggactgtcaagatcagacacaagtttggcctgtgtaacaccagctgttgtgtctgtc
tgttgtgagttgaatacactaatgtcttgttttcactcatttgtcacatgggcttcacaa
gaatgtgcctctgtaagaagacgaaggccatacctgtacaggaagcgagccatccaccgt
ggccgcccggcccctggcgaggaggaagaggagagcgcaccgcccatcagggggaggggc
cacgcggctgaagagccgccccccaatgcccccttcggcaatcgccgcggtgggcgccag
aagaagtctgtgtgggagcagcgcacgaaccagctgcgcaagcggcgtcaggtggccagc
cgcgaggagctgttcggcggcggcagcagccccaccgaggaccacctggacacccccgca
ggggaccacgcgccctccctctcgcccgacaccagcccgggacacctgcccgagtcgccc
atgtcagtggccatggccatgccggagccgcccatgtccaacccgctgcccgagccgccc
gagtcggagcctctgcctctgcccatgctgccctgcgtgacggaggagcggtcgggggcg
ggggccgggggcggacaccgctccaacaccgagcggaggcaccgggtggcgaggaaattc
cgcgccgcagccgtggtggcgggcatggaagggggaggggaggggcggcacaggagacac
cggcacagagaggcgcgcagcagagactcgcccacgcaggcggacggcggggacaggaag
acctcggagtctgggggagctgaaggagtggggcagccagaggagggtgccagccaggcg
gagagggcaggagatggccacagcgagtccatgcctgatgtgctgggccttcaggcagct
cctgaggatgcagaggcccagcctctgatggagtctgtccaggcagggcaggaggacgat
ggggaggctccatcgccggaccagcaggtggcgcaggagggagggctcgagctgacggag
aacgccagcagctatctgaaccaggaggagccccccgcagacagcagcgtggtcatcgag
atgtccggggcacaaccactgttggagctagtccccatgactgtgggtcatcccagaaag
accttagcccaaagaccccagagagtgaactttaaagactcggaccgcggtgagagagat
gaagaggaaggcgaggaagaggaacccaacccacccaaacctgtggcgccagacagcatg
ttcatcttcaaggcttccaatccgctgagaaggatatgtcactacgcggtgaccatccgc
tactttgagatcaccatcctcctggtgatcgtggcgagcagcatcgcccttgctgcagag
gacccggtcagcacaaactcggagaggaacaaagtcctgagatactttgactatgtcttt
actggcgtcttcacatttgagatgataataaagatgatcgaccagggcctgattctgcat
gatggctcatacttccgggacccgtggaactttctggacttcattgtggtggtgggagcg
ctgatagcctttgctctgaccaatgtgatggggaacaccaaaggccgagacatcaagacc
atcaagtctctgcgcgtcctcagagtcctccgtcctctcaagaccatcaagagactccct
aaactgaaggcggtgtttgactgtgtagtcacctccctgaagaacgtcttcaacatcctc
atcgtctacaagctcttcatgttcatcttcgcagtcatcgctgtgcagctcttcaagggg
aagttcttctattgtaatgacgcctcaatgaacacggaaaaggaatgccaaggctactac
atcgactacacccgagacaggaaggaggtgaagaagagggagtggaggagacacgagttc
cactacgacaacgtggcatgggccctgctcaccctcttcaccgtgtccacaggagagggc
tggcctcaggtcctgcagcactcagtcgacgtgacggacgaggatcacgggcccagccgt
ggcaaccgcatggagatgtccgtcttctacgtggtgtacttcgtggtcttccccttcttc
ttcgtcaacatcttcgtggccctcatcatcatcaccttccaggagcagggggacaagatg
atggaggagtgcagcctggagaagaacgagagggcctgcattgactttgccatcagcgcc
aagcccctgacccgctacatgccccagaaccacaagaccttccagtaccgcatctggcac
ttcgtggtgtcgccctcctttgagaacaccgttctggtcatgatcgccctcaacacagtg
gtgctcatgttaaagtactactccgctccccctgcgtacgacaccgtcctgaagcacctc
aacacagccttcacagtgctcttctccctggagtgcatcatgaagattatggcctttggc
ttagtgaactactttcgggacacatggaacatctttgacttcatcaccgtgttgggcagc
ataacggagattgtggtggatttgcagtcaatcaacaccttcaacatgagcttcctgaag
ctgttccgaacggcccggctcatcaagctgctgaggcaaggctacaccatccgcatcctt
ctctggacctttgtgcagtcattcaaggcacttccgtatgtgtgtctgctcattgccatg
ttgttcttcatctatgccatcatcggcatgcaggtgtttgggaacatcaagctgaatgac
gagagccacatcaaccagcacaacaacttcaagtacttctccagcgcactgatgctgctc
ttcaggagtgcgacgggcgagtcgtggcaggagatcatgctgtcgtgtctggcggggcgg
gagtgtgagcccgacctctccatcgctccccccttcacgtcccccgaccacgagggggga
tgtggcaccgacttcgcctacttttactttgtgtccttcatcttcttcagctcattcctg
atgctgaatctctttgtggctgtgatcatggataactttgagtatctgacccgagactcc
tccatcctgggcccccaccacctggatgagtttgtgcgcgtctggggggagttcgaccgt
gccgcctgcggccgtatcacctacaacgccatgtacgagatgctgactcacatgcccccc
ccactcggcttagggaagaagtgcccagccaaagtggcctacaggaggcttgtcctgatg
aacatgcccgtggacgaagacatgagcgtccacttctcctccactctcatgtctctcata
cggacggccctggaggtcaaaatagctcgaggtggagaggaccggctgcagctggacacg
gagctgcagaaggaaatcagcatcatctggccgcacctctcgcagaagacactggacctg
ctggtgcccatcaacaaagacacagacatgacagttggaaagatctacgcctccatgatg
atcatggactacttcaagcagaacaaagccaagaagctgcggcgcctagcagaagagcag
aagaacagtcctactctccctctcgtcacacatagtgctggctcagccttgacgagagga
ggtttcttggcactgagccccatctcaccacaggagctgttcattcagcccatgactcaa
aacatggaggacagccactctctggttggggagtacaaagggtttgtgggagcggccctg
gccctctctggacgggctctgtttgtgcgggcgtcctccatgccccgtctggctgtagac
gcacaggtggacgtggacaccagcgtgatgaagcgctcctcgtccactgtgggggagcag
ggtgtgaacgggttactgcgggagggctcctccccagagcgagtttaccggccgcgacac
aagagctacaaggctgcagtgtcgcgcacggacccgtggaagcagggcgagcgggagaag
gagcgcggccgttccaaggagcgccgccatctgctctccccagacacctcccgctgcacc
tcccgctgcacgtccgaggaccggagcccccagccccgcacacgctcccccagcccggag
aggccgcggcccgccatcagacagggcaacagctctgacagcccggtcccctccacgtct
gagtccagcacccctagtgtccggaggccctcgtcccagaccccgacgcgctcacgcccc
cacatctcctactcgcccctggtgtgccgcacgcaggcctcctcgctagccgacggcgac
ggcgacgacgaagacgacggggccacccagcagaccgaggttcgggtcagggaggcctcg
tgggacgccggaggagaagaggaggaggaggaggaggaggaggaggcggtgaagggaggg
ggggcggatacagacagggacagcgacgactacgtgtgcgcggtcccgcggcgctacccc
tcggagccctacctggcgctgccggacgacgagcacagccccgacccctcggcgcccatg
gagacgctcaccttcgaggcggccgtggccaccagcctgggccgtgccaacaccgtcagc
gcctcggtgcgcacgcgctcccgcctcggctggcagatccccaacggacacttccggaag
cggctggcccagagcgcctccacggccggctgcccggtcctcagtgacacggaggaagat
gacaagtgctag
DBGET
integrated database retrieval system
