Clupea harengus (Atlantic herring): 105891504
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Entry
105891504 CDS
T09045
Symbol
cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
char00535
]
105891504 (cspg4)
04091 Lectins [BR:
char04091
]
105891504 (cspg4)
Proteoglycans [BR:
char00535
]
Cell surface proteoglycans
Others
105891504 (cspg4)
Lectins [BR:
char04091
]
C-Type lectins
Others
105891504 (cspg4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
105891504
NCBI-ProteinID:
XP_031421079
Ensembl:
ENSCHAG00000006698
UniProt:
A0A6P8F7I4
LinkDB
All DBs
Position
3:complement(27463886..27502798)
Genome browser
AA seq
2306 aa
AA seq
DB search
MRVLPLVACAFLALLCLPDPGRGASYFGDSFCKIHAIQDLSNFDLSLQFKTSKRSGLLLL
AAGVQDYLSIELYNGKLQARMNMGFGEVVLSSSQGLQLNNLLDHHVSITLKESKFTMAVD
DLFTTDTDVREGEDDLNIDIGVFLGGKDDLDASYLNHAVPPFRGCITDVKFESHQFDILA
SETTDCQDTKELCSDEFEAADGEAISFISPDSFVSLPTWVRTSSDIHTLELLMKTTIEDA
LLAFHPGRESDLIALGVVGGYLKGVVDLGNGIVALDNLKVQLDDDQWHRIRVQVDSDKFE
MNVDSQSVSIPISGEDKLDLIGNLYLGGIQGKMKDVFREANYLSRMEEQVTSESFIGCLG
EIKVNEKDKSLQDALVTKDVHVKCEGEDYDYSTYDEFETPTTTAPVRIRYVDVNPEERHC
IPTNDMPEIFQNVTKLLDFTTLLVPEGGEAYLDINNLSPTFDIAAAGIRQSQIIFTLVND
PWYGLVDMNINSRRTKKFTLLDVVSKKIKYLHDGNERYGDQIELEVVAHSSGFLPDCLKT
PRQYVLPVEIIPVNDIPQLSSGDIAITANGRTRLSPNLIKIVDSDTRCDDLIVRVIAESN
TPEGYLENVQQPGESISQFTCRQLKDGLIYYIHKGGSGAGLKLMVSDGQSSSEPTTFRLS
VTQPQINLVTNTGVLISQGGNSTIGIQQLAVFVTPRNGDVLYNITQPLRYGELQSTTAGN
DVPRKVTYFRQSDLEQNRLRYISTDTSDQEEIVTEYVQFDVHLGQQSLTDNTFLIKITPA
KVRVTNIVPLEVEAGQQTVISQAELQATVTGTTLELDSIQYILVKPPTLGTLQLQGRELT
EGDTFTQQELASAHISYMPTVQIAVDVPDQFQFKVLAENQYSPMYTFPITILADSNTPVL
TNERLTVLEGGENILNKEYLWIEAPNLPDYVYKILQGPQYGHLLRESPPGYPRFEGAVGV
FSNEDLLLDRLIYKHDGSETGDDYFTFQAYEQTEGSVSTDKQESLSGTFRISVQSKNDHV
PQRVIDKTFNVVRNGERLLTTEDILFDDNDSDFNDTHLVYVRVGILSGNIVSTADPSQAL
YRFTQADLRDHKVLFVHHGADRERFQLQVSDGLHKTTALLEIQAGEPYLHVVNNSIAVMD
HGSTKTLNTTLLSADTNAYVQDASEIIYEVTAPPSDGRIIVSGIEASQFTQKDLKKGVVS
YEHHDYSLKSKDSFSFTVRCKELSEDGIFRIKIFKQGYLSEPKVINNKNIISYEGEHTVI
AQDHLKVEQPDILPTEMVYTIKDPPRLGHVVKMINDSESTVAPVLDFIQTFTQEDINKGR
ILYVSTSVQGYDVFTIEVSNGFTTVEDLEVQINIVPRLIPVQTFNFTVKEGGAVALSQEL
LNISHAFYRMANIDFIVEEAPQHGDIRYLEGDDFELSSFTWDEVKRKVVYYLHDSTETTE
DSFTLTASDFENTRRSFPITFGVTVIPINDEPPLLERNTGIEVLVGEEAEITNTELNTQD
ADTPKDEVIYSVEVLTNGMVALKISPDESLDNFTQAQIDNGEIIFSHQGSESGGFRFTVT
DGEHTSPLYQFVVTARQPTITVETGEELMVFPGTKQAISSGMLKAVTDDSGNELRYSLQK
PPRRGRLIRQIQRNRFEEITTFSQAELEAGNIYYEHQMPEEPFWVVRDSLQLQSSSPSAS
AVLLPITVSFYAADHNVSSQLWKNKGLDVVQGQSKVIDSSRLDASNLLASLPESERGTQD
VLYKVKEFPVHGRLTLGGVDLTHDAPYFLQEDVNSGDLEYQHGDSGASSDSFSFRAWLNP
HSRGPSSPPQSALVLEEIFHLSLRPRDSSPPELVSLELLLEVLQGSTEVLSKQYLNTIDE
DNTPDEVRFTIIKSPSNGQLINTDTNEQISEFTQEDINADRVAFVSHGSLSEGFMEFTVS
DGKHHTTPYTLHIGILAHTLVLTKPAEIYVLQGDDETPITESMLKASTGGPIEEEVLYKI
IGTPKYAAVMVDRQTTHAFTQKQINEGRVSVRFVASTSPRDSIPFLARSRAANVSSVLNI
TVKPLAKIAKDPLLPRGATVLVDGKLLDATPLADKAKTLPTFTVIQKPKSARFVKMKGEG
EGEPVNTFTQKDLDDGLVALEILNNTGKQAGTDGKDEARLLLKAHGVPPAECVLPFTTAP
YSPTGVYGATVIKNPKLPDSKDTHPRWRGVGPTTAAPNPGSHKTPMVSRRGTLWSILIPI
LIILLLLILAAVLAYYLVRRNKTGKHDVQTVATKPKNGDVSQETFRKTDPANNIPMSSMD
SKEADPELLQHCRTTNPALKKNQYWV
NT seq
6921 nt
NT seq
+upstream
nt +downstream
nt
atgagagtcctgcccctggtagcgtgtgccttcttggccctgctctgtctgcctgatccc
ggccgcggagcatcctattttggagacagtttctgtaagatacatgccatccaagacctc
tccaacttcgatctttctctgcagttcaagacaagcaaacggagtggtcttcttctcctt
gctgcaggtgttcaggactacctgtctatagaactctacaatggcaagttacaggcaaga
atgaatatggggtttggagaggtagtcctttcatcatcacagggtcttcagctaaacaac
cttctggaccatcatgtatccatcactctgaaagaatccaaattcacaatggcagttgat
gacctatttaccactgacactgatgtgcgagaaggtgaagatgacctcaacattgatatt
ggtgttttcctcgggggcaaagacgacttggatgcgtcatatctcaaccatgctgtccct
ccgtttcgaggctgcatcactgatgtcaagtttgagtctcatcagtttgatatacttgcc
tcagaaaccacagactgtcaagacacaaaggagctctgcagtgacgagtttgaagctgcc
gacggggaggctataagcttcatcagccctgactcctttgtttcgttgcccacgtgggtc
aggaccagcagtgacattcacactcttgagctgttgatgaagaccactattgaagacgct
ctcttggcctttcatcctggacgagagtcagacttgatagctctgggtgttgtgggtggg
tatttgaaaggggtggtggacttgggcaatggcattgtggcgcttgacaacctgaaggta
cagcttgatgatgatcagtggcacagaattagagttcaggtcgactctgacaagtttgaa
atgaatgtggacagtcagtctgtatccattcccataagtggggaagataaattggacttg
attgggaatctgtatttaggaggaattcagggcaagatgaaagatgtatttcgagaggca
aactacttgtcacggatggaggaacaagtgacgtcagaatcattcattggatgtttgggg
gaaattaaagtgaacgaaaaggacaaaagccttcaggatgcattggtcactaaagatgtg
catgttaagtgtgagggcgaggactatgattactcaacttatgacgaatttgagacaccc
accaccactgcccctgttcgaattcgatatgttgatgtaaatcctgaagaaagacattgt
atcccaactaacgacatgccagaaatcttccaaaatgtcacaaagcttcttgatttcaca
actttacttgttcctgaaggaggcgaagcctacttagacattaacaacctaagcccaacc
tttgatatagctgcagctggcatccggcaatctcaaatcattttcactcttgtaaatgat
ccctggtacggattagtggatatgaacatcaacagcagacgaacaaagaaatttactctc
ctggatgttgtcagtaagaaaattaagtatcttcatgacggaaatgaaaggtatggtgac
cagattgaacttgaagttgtagcccatagtagtggcttccttccagactgcctgaaaacc
cctcggcagtatgtccttccagtggaaatcatccctgtcaatgacatcccccaactgagc
agtggggacatcgcgatcactgcaaatggacgcactcgtctgagccccaacctcataaag
attgtcgattcagacactcggtgtgatgacttgattgttcgtgtgatcgccgagtcaaac
acaccagagggatacctagagaatgtgcagcagccaggagagagcatcagtcaattcact
tgtaggcagttaaaggatgggctcatttactatatacataagggtgggagtggagcagga
ctgaaattaatggtatcggatggtcaatcttctagtgagcccaccacatttaggctatct
gtgacacaaccacagattaaccttgtgaccaacacaggtgttcttatatctcaaggtggt
aattctaccattggcatacaacaattggctgttttcgtcactcccagaaatggagatgtt
ttatacaatatcactcaacctctgagatatggtgaactgcagtcaaccactgcaggtaat
gatgtgccaaggaaggtgacctattttcggcagtcagatttggaacaaaaccgtttaagg
tacatcagcacagacacaagtgatcaggaagaaatagtgactgagtatgttcagtttgat
gtccatcttggacaacagtcactgacagacaacacctttctgatcaagatcacacctgct
aaagtgagggtgacaaatattgttccattggaggtagaggcagggcagcaaacagtcatt
tcacaagcagaacttcaggcaacagtgactggaacaaccttggaactggattcaatacaa
tatatcctcgtgaagcctccaaccctggggactctacagttacaaggcagagaactcaca
gaaggtgatacattcactcagcaagaactggcaagtgcccatatcagctacatgccaaca
gtccaaatagcggtcgatgtgccggaccaatttcagtttaaagtgttagcggagaatcag
tattctcccatgtacacgttcccaattacaatcctggctgactcaaacactccagtttta
accaacgagcggctcactgtccttgagggaggggagaacatcttaaataaagagtatctc
tggattgaggcacccaacttaccagactatgtgtataaaattttgcaaggcccacagtat
ggtcacctccttagagagtctccaccaggttatcccaggtttgaaggtgctgttggagtg
ttcagtaatgaagacctgctcttggacaggctcatttacaaacacgatggatctgaaaca
ggcgacgactacttcaccttccaggcatatgagcaaacagagggcagtgtcagtactgac
aaacaggagtccttgagtggaactttcaggatatcagttcagtctaaaaatgatcatgtg
ccacaacgtgtcattgacaagaccttcaatgtggtgcggaacggagagaggttgttgacc
acggaggacatcctgtttgacgacaacgactcagacttcaatgatactcatctggtttat
gtacgtgtaggaattttgtcaggtaacatagtctccaccgcagatccctcccaggccctg
taccgcttcactcaagccgacctgagggaccacaaagtcctcttcgttcaccatggggcg
gatcgtgagaggttccaacttcaggtctctgacggtttgcacaagacaacagccttgctt
gagatccaagctggggaaccataccttcatgtggtgaacaacagcatcgcagtcatggac
cacggcagtaccaagacactgaacacaactttgcttagcgctgacacaaatgcgtatgtc
caagatgccagtgagattatatacgaggtgacagcacccccaagtgatgggaggatcatc
gtcagtggaattgaggcctcacagttcacacaaaaggatttgaaaaagggtgtggtgtca
tatgaacaccatgactacagtttaaagtcaaaagattcttttagcttcacagtacgatgc
aaagaactctcagaagatggaatattcaggatcaaaatcttcaaacaaggctacttgtct
gaacccaaagtgatcaataacaagaacataatctcatatgagggagaacatacagtaata
gcccaagatcatttgaaggtagagcaacctgatatcctgcctactgaaatggtgtatacc
attaaagatcccccacgactgggacacgtagtgaagatgatcaatgactccgaaagcaca
gtggccccggtgctggacttcatccaaaccttcacacaggaggacatcaataagggccgc
atcctctacgtgtccacctcagtccagggctatgatgtcttcaccattgaagtcagcaat
ggcttcaccacagtggaggacctggaggtgcagatcaacatcgtcccacggctcatccca
gttcaaaccttcaacttcactgtgaaggaagggggggccgtggcgctgtcacaggagctg
ctcaatatatcccacgccttctacaggatggccaatattgacttcatagtggaagaggcc
ccacagcatggagatattcgttacctggagggggacgattttgagctgtcctcctttacc
tgggatgaggtcaagaggaaggttgtctactacctgcacgacagtacagagaccacagag
gacagcttcactctcactgcatctgactttgagaacaccagaagaagcttccccatcact
tttggtgtcaccgtcatccccatcaatgatgagccgccattactcgagcgcaacacagga
atagaggttcttgttggtgaagaggccgaaatcaccaatacggagctcaatacccaggat
gcggacacaccgaaagatgaagtgatttattctgttgaagtactcactaatgggatggtg
gctctaaaaatatctcctgatgaaagccttgacaatttcactcaggcacaaatcgacaac
ggcgagatcattttcagtcatcaaggctcggagtctgggggcttcaggtttaccgtgacg
gatggagagcacacatcaccgctttatcagtttgttgtcaccgccaggcagccaaccatt
accgtggaaacaggagaggaactcatggtgttcccagggaccaaacaggcaatcagcagt
ggtatgctgaaggctgtgactgatgacagtggaaatgagctcaggtactcgctgcagaaa
ccgcctcggcgcgggagactcatcaggcagatccagagaaaccggtttgaagagataacg
accttctcacaagcagagctggaggctggaaacatctactatgagcaccagatgcccgag
gaacccttctgggttgtacgtgactcgctgcagctgcagtcgtcatcaccttcggcctcg
gccgtcctcctacccatcaccgtgtctttctatgccgccgatcacaatgtttcatctcag
ctctggaagaataaaggtttagacgtagtgcaaggccagagtaaggtcatagacagctcc
cgactggacgcctccaacctgctggccagcctccctgagtcagagcgtggcacccaggat
gtgctgtacaaggttaaggagttccccgtccatggccggctcactctgggtggtgtggat
ctcacacacgacgccccgtacttcctccaggaagacgtgaacagcggtgacctggagtac
cagcacggcgactctggggcctcctctgacagcttctccttccgcgcttggctcaacccg
cacagcagggggccctccagcccaccgcagtccgctttggttctggaggagatcttccac
ctgagcctccgaccacgtgactccagccccccggagctggtgagcttggagctgctgctg
gaggtcctgcagggttccacggaggtcctctccaagcagtacctcaacaccatcgacgag
gacaacacccctgatgaggtgcgcttcaccatcatcaaaagcccctccaacggccagctc
atcaacactgataccaatgaacaaatcagcgaattcacccaggaggacattaatgctgat
agggtggcattcgtaagtcacggaagcctctctgagggttttatggagttcacagtctca
gatggcaagcaccacaccacgccatacacactccatattggcattctggcccacacgctg
gtgctaaccaaacccgcagagatctatgtcctgcaaggagatgatgaaacccccatcacc
gaatccatgctaaaagccagtactggtggacccattgaggaggaggtcctctacaaaatc
atcggcacgcctaagtacgccgctgtaatggtggacaggcaaacaacccacgccttcacc
caaaagcaaatcaacgagggtcgggtcagtgtgcgctttgtggcgtcgacgtcacctcgg
gacagcataccattcctggcgcgaagcagagctgccaacgtttcttctgtcctgaacatc
acagtgaagccactggcgaagatagcaaaggatccgctgcttcccagaggtgctactgtc
ctggttgatggaaagctactagacgcaactccgcttgccgacaaggcgaagacactccca
acattcacagtcatccagaagccaaagtcggcacggtttgttaaaatgaaaggcgaaggg
gagggcgagcctgtgaacaccttcacacaaaaggacttggatgacggacttgttgcacta
gagatcctgaacaacacgggtaaacaggcagggactgacggtaaagacgaggcccgcttg
cttctcaaagctcatggggtcccgcctgctgagtgtgtcctaccgttcaccactgccccc
tacagtcccacaggtgtatatggagcaacagtcataaaaaaccccaaattacctgacagc
aaggatacgcatccaaggtggagaggagtgggcccaacaacagccgccccaaatccaggt
tcacacaagaccccaatggtatccagacggggcaccctgtggtccatccttattcccata
ttgatcatcctcctgctgttgattctagctgctgttctggcgtactatctggtgcgccgg
aataagacgggaaagcacgacgttcagacggttgccaccaagcccaaaaatggggacgtc
agtcaggagacatttcggaaaacagatcctgccaataacattcctatgtccagcatggac
tcaaaggaggcagatcctgagttactgcagcactgccggacaacaaaccctgccctgaaa
aaaaatcagtactgggtatga
DBGET
integrated database retrieval system
