Clupea harengus (Atlantic herring): 105891549
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Entry
105891549 CDS
T09045
Symbol
srfa
Name
(RefSeq) serum response factor a
KO
K04378
serum response factor
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105891549 (srfa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105891549 (srfa)
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
105891549 (srfa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
105891549
NCBI-ProteinID:
XP_031418079
Ensembl:
ENSCHAG00000006544
UniProt:
A0A6P8F065
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Position
24:complement(13945669..13970726)
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AA seq
632 aa
AA seq
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MGTRGGVRSGNGTGLTTLQVANTSGGLGGINTGMTMPDGGRYNERESAEVVVSCSDAESD
SGDDEDTGSAGDRRGVKRERAEMEVGSSSGAAGLERGAYGASAGGVTGAKPGKKTRGRVK
IKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPM
ITSDTGKALIQTCLNSPDSPAPRSTSDPSSEQRMSATGFEETELSYQVAEGADGVAAAGA
ENRAGFTLSSLQGGAPSNTSTPPSSSSSSSSPPPLPSSSSSTSSSAVPCWSGVVTTQSGS
LCANGTVLKATNMLTHAQAHAHTTTTATGMVLPQGITIMSGTTLPPGTHTIPLSQLQAHS
LTFQTTASTSSSSTSSSSASSSSTTQPHTQTLQTLQALQALQAIQTPQQHQHQQQQHLHQ
HQQHPMGLPFVTATTTAAAAGAVTPFSHALSQQQLQQAAQTHTFLRLPATVSLSGAGLPQ
QLQLVQSSSQQGGAIISSSSDGTSTSDINHTTVSSTVSHPTTIITSSASSAGGHMMYPSP
HTVMYATPTAEGGGGLTVLNPFPPSSTIQLSHSQAQDTGAISQMFFTSPQGTVQIPVSAV
PLHSMLIGQQPGGSSSNLTELRVVSLDSTKAD
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgggcactcgagggggtgtgcgctctggtaacgggactggattaaccacgctacaggtt
gccaatacatctggaggtctcggtgggataaacacgggaatgaccatgcctgacggcggc
agatacaacgaaagggagtccgctgaggtggtcgtcagttgctccgacgcagaatcggat
tcgggggatgacgaggacacaggttcagccggggacaggagaggagtgaagcgtgaaaga
gcggagatggaagtcggaagctcctcgggagcagcgggcttggagcgcggtgcatacggt
gcttcagcaggtggcgtgaccggtgcgaagccaggcaagaaaactcgcgggcgagtcaaa
attaaaatggaatttatcgacaacaagctgaggcggtacacaactttcagcaaaaggaag
acggggatcatgaaaaaggcgtatgagttgtccactctgacgggcacccaggttctgctg
ctggtggcgagtgagacgggtcacgtctacacgttcgccacgcgcaagctgcagcccatg
atcaccagcgacacgggcaaggcgctgatccagacgtgcctgaactcgcccgactcgccg
gcgccacgctcgacctccgaccccagcagcgagcagcgcatgagcgccacgggcttcgag
gagaccgaactcagctaccaggtggcagagggggcggacggggtcgcagccgccggagcg
gagaacagggctggtttcaccctctcctctctccagggcggagcccccagcaacacctcc
acccctccctcctcctcctcctcctcttcctcccctcctcctctcccatcctcctcctcc
tccacctcctcctctgctgtcccctgctggtctggagtggtcacgacgcagagcggcagt
ctgtgtgccaacggcaccgtgctgaaggccaccaacatgctcacacacgcgcaggcgcac
gcacacaccaccaccacggcgaccgggatggtcctgccgcagggaatcaccatcatgtca
ggcaccactctcccacccggcacacacaccatccccctcagccagctgcaggcacactct
ctgaccttccagaccaccgcctccacctcctcttcctccacctcctcctcttccgcctcc
tcttcctccaccacccagccacacacacagacgcttcaaacgcttcaggcactacaggcg
cttcaggccattcaaacgccgcagcagcatcagcatcagcagcagcagcatctgcatcag
caccagcagcatcctatggggctgcccttcgtcacggcgaccaccaccgccgccgccgcg
ggcgccgtcactcccttctcgcacgcgctgtcgcagcagcagctgcagcaggccgctcag
acacacaccttcctgcgcctgcccgccaccgtctcgctctcaggtgccggtctccctcag
cagttgcagctggttcagtcctccagccagcagggcggcgctatcatcagcagcagcagc
gacggcacctccacctccgacatcaaccacaccactgtcagctccactgtctcccacccc
accaccatcatcacttcctcggcctcctccgcaggcggtcacatgatgtaccccagccct
cacactgtcatgtatgccacgcccactgccgaggggggcggcggcctcaccgtgctcaac
cccttccccccgtcctccaccatccagctctcccattcgcaggcacaggacacaggagcg
atttctcagatgttcttcaccagtccacagggcactgtccaaatccccgtctctgctgtt
ccactgcactcgatgctgattggtcagcagccggggggtagcagcagtaacctgacagag
ctgcgagtggtcagcctggacagcaccaaggccgattga
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