Clupea harengus (Atlantic herring): 105891552
Help
Entry
105891552 CDS
T09045
Symbol
eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03013
Nucleocytoplasmic transport
char03015
mRNA surveillance pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105891552 (eif4a3)
09122 Translation
03013 Nucleocytoplasmic transport
105891552 (eif4a3)
03015 mRNA surveillance pathway
105891552 (eif4a3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105891552 (eif4a3)
03041 Spliceosome [BR:
char03041
]
105891552 (eif4a3)
03009 Ribosome biogenesis [BR:
char03009
]
105891552 (eif4a3)
03012 Translation factors [BR:
char03012
]
105891552 (eif4a3)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105891552 (eif4a3)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105891552 (eif4a3)
mRNA cycle factors
Stress granule specific factors
105891552 (eif4a3)
Spliceosome [BR:
char03041
]
Complex C
Other components
EJC/TREX
105891552 (eif4a3)
Ribosome biogenesis [BR:
char03009
]
Eukaryotic type
90S particles
Helicases
105891552 (eif4a3)
Translation factors [BR:
char03012
]
Eukaryotic type
Initiation factors
eIF-4
105891552 (eif4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
TniB
Motif
Other DBs
NCBI-GeneID:
105891552
NCBI-ProteinID:
XP_012673178
Ensembl:
ENSCHAG00000006162
UniProt:
A0A6P3VJK1
LinkDB
All DBs
Position
24:complement(13935636..13945282)
Genome browser
AA seq
406 aa
AA seq
DB search
MAVAQVPVRKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggctgtagcacaggtacctgttagaaagcggctcctgaaggaggaagatatgaccaaa
gtggaatttgagaccagtgaagaggtagatgttacaccaaccttcgataccatgggcctg
cgagaggacctgctccgtgggatctacgcttacggatttgaaaaaccatccgctatccaa
cagagggccatcaaacagatcatcaagggcagggacgttattgctcagtcccagtccggt
acgggtaaaaccgccaccttctgcgtgtccgtgctgcagtgtctggatatccaggtgcga
gagacccaggcgctgatcttggctccaacaagagagttggctggacaaatccagaaggtg
ttgttggccctgggtgactacatgaatgtccagtgtcacgcctgcatcggagggaccaat
gttggtgaggacatcaggaagctggactacggacagcacgtggtggccggcaccccagga
cgcgtgttcgacatgatcagacggaggagtctgaggactcgcgccatcaaaatgctggtg
ctggacgaggcagatgagatgctcaacaaaggctttaaggagcagatctatgacgtgtac
cggtacctgcccccggccacccaggtgtgcctcatcagcgccacgctgccccacgagatc
ctggagatgaccaacaagttcatgacggaccccatccgcatcctggtcaaacgtgatgag
ttgactctggaaggcatcaagcagttctttgtggccgttgagcgtgaggagtggaagttc
gacacgctgtgtgacctctacgacacactcaccatcacacaggctgtcattttctgcaac
accaagaggaaggtggactggctgactgagaagatgagggaagccaacttcaccgtgtcg
tccatgcacggagacatgccccagaaagagcgcgagtccatcatgaaagagttccgctcc
ggagccagccgagtgttgatctccactgacgtgtgggcccgaggtctggatgtgccccag
gtctccctcatcatcaactacgacctccccaacaacagagagttgtacatccacaggatt
ggccgatcgggtcgttatggccgcaagggtgtggccatcaactttgtgaagaacgacgac
atccgcatcctgcgagacattgagcagtactactccacacagatcgacgaaatgcccatg
aacgtggcggacctcatttaa
DBGET
integrated database retrieval system
