KEGG   Clupea harengus (Atlantic herring): 105891668
Entry
105891668         CDS       T09045                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03030  DNA replication
char03410  Base excision repair
char03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105891668
   03410 Base excision repair
    105891668
   03420 Nucleotide excision repair
    105891668
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:char03032]
    105891668
   03400 DNA repair and recombination proteins [BR:char03400]
    105891668
Enzymes [BR:char01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     105891668
DNA replication proteins [BR:char03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    105891668
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      105891668
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 zf-DPOE DNA_pol_B DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 105891668
NCBI-ProteinID: XP_031426819
Ensembl: ENSCHAG00000002280
UniProt: A0A6P8FL21
LinkDB
Position
7:26254772..26280141
AA seq 2286 aa
MVLQNSGKYRSDRGKDQENQQDDMSGQSAVKRLERSQFTDEMDTRFGFERMKDPGEKTGW
LINMHPTEILDDDKRMMSVVDYYFIQEDGSRFKVALPFKPYFYVATRKNCEREVISFLSK
KFQGKVAKLEVCSKEDLDLPNHLVGLKRNYIKLSFNTVDDLMKVKRELSPAIRKNREKEK
SNETYTSMLSSALVGGNIMTGEEDGPSKKMADQMDNLVDMREYDVPYHVRLSIDLQIHVA
HWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMMSYMID
GQGFLITNKEIVSEDIADFEFTPKPEYEGPFTVFNEPDEAALIQRWFEHIHETQPNIFVT
YNGDFFDWPFVETRAAHHGLNMYREIGFQKDNQGEYKSSQAIHMDCLRWVKRDSYLPVGS
HNLKAAAKAKLSYDPVELDPEEMCRMATEQPQTLATYSVSDAVATYYLYMKYVHPFIFAL
CTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQEFNKMTNDGHVMDTETYVG
GHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTLRHAIEEEENIPLEQVTNFNEVCE
EIKKKLVSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGA
NCQRKMAWQWRGEIMPASRSEFHRIQQQLESEKFPPFFPNGPPRAFHSLDREEQARHEKK
RLADYCRKAYKKVHVTKLETRITTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSQ
AQDRGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGAN
IITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVLKSTNEKKPKVTISYPGAMLNIMV
KEGFTNHQYQELVDPANLTYETRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNE
DGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVSKVADYWLDVLYSKA
ANMPDTELFELISESRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDKGLSCRYVIS
RKPEGSPVTERAIPLAIFQAEPGVKKHFLRKWLKMPGLHDLDIRSILDWNYYIERLGSAI
QKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIFKQKKISELFTSEGKRQLPNVVQP
GEANDMEDFGKPPRPLQPAILISTKRKRVSQGEDSQAESQELELTQSWREILGPPPSKEE
LLVWLRYHKKKWELQLRQRKERRKKRRLVDGEAQPGGGGVIRDGPTTALGNFLRKTARSI
LDMPWQIIQVAETSHPGLFKLWAVIGSDLHCMKLTIPRVFYVNQRIPKQDEGPTYKKVNR
ILPRSNVVCYLYQYTVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQLGCMCM
VNKQAVRDLAGREADTFDLENLDMRSLAQFSYLEPGSVRHIYLYHHSQGHKGLFGLFIPS
QRKASVFVLDTVRSNQMPNLGNVYGTERAALLEKTSEELLPPEKHQFEVRAESDVKAIYR
AVQRILLNYKEERRGPTLIAVQSNWELRRLAAGMGVLEEFPVVPVHVPDEISYSVLDWQR
HGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPHDVSIFGSDLFLARHLRKHNHLLWL
SPTARPDLGGKEADDSRLVMESDDRASVEINGQGCYSTVCVELDIQSLAVNTILQSQHVN
DMEGGASMGVSFDVIQHSSLEDMMSGNQAANAVASYDETALCSNTFRILKSMVVGWVREI
TQYNNVYADNQVMHFYRWLRSPSSLLYDPALHRTLNNMMKKIFLQLVAEFKRLGSNVVYG
NFNRLILCTKKRHIDDAIAYVEYITNSIHSREIFHSLSLTFSRCWEFLLWMDPANHGGVK
GKLPSSVLCGENGTGKKKKEKGDGSEEEGSEDEDDEDEVAGREGEGGDGEDNVEDLIESS
WNVMQYLPQTASCQKYFLMIISAYIAAVYHSMREELRRNAPGATPIKRRGGSQASQQAAG
DGSSLPGMISFSQEYISGELTQNFFTITQKIQKKVMGTRNMTLPSEMFPVLPGSHLPLHN
PALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEDAQFRDPCQSYVLPEVICH
HCNFCRDLDLCKDPSMAQDGTVLPQWFCSNCQAQYDTDSIEMALVAALQKKLMSYTLQDL
ACTKCKGVKEANMPLYCRCAGDFSLTFSIKSFSEQIGVFRNIAAHYKMGFLQETIDWLLL
MTPQLA
NT seq 6861 nt   +upstreamnt  +downstreamnt
atggttctacaaaacagtggaaaatacagatcggacagaggaaaggaccaggaaaaccaa
caggatgacatgtccggacagtcagccgtcaaacggctggagcgcagtcagttcacagac
gagatggacacccgcttcggcttcgaaaggatgaaagatccgggggagaaaacgggctgg
ttgattaacatgcacccgacagaaatattggatgatgacaagaggatgatgagtgttgtc
gactattacttcatccaggaggatggaagcaggtttaaggtcgccctcccatttaagcca
tacttctatgtcgctaccagaaagaattgtgagagggaggtcatctcattcctgtcaaag
aagtttcaggggaaagtggcaaagctggaagtctgctccaaggaagacttggacctgcca
aaccatctggtgggactgaagagaaattatatcaagctgtcattcaacacggtagatgat
cttatgaaggtcaaacgagaactctccccagctattcgcaagaaccgagaaaaagagaag
tccaatgagacgtatacaagcatgctgtccagtgcattggttggaggaaacattatgacc
ggggaggaggatggaccgtccaagaagatggcagatcagatggataatctagtggacatg
agggaatatgatgtcccctaccatgtccgcttgtccatcgacctgcaaatccatgtggct
cactggtacaatgtccgttaccgtggcagtgcctaccctcctgagatcgtgcgaagggac
gaccttgtagagcgaccggatccagttgtgctggcttttgatatagagacgaccaaactt
ccactcaagttccctgatgcggagaccgaccaaatcatgatgatgtcatacatgattgat
ggacagggctttctcattacaaacaaagaaatcgtctctgaggacattgcggattttgag
ttcacccctaaaccagagtacgagggaccatttacagtgttcaatgagccagatgaagcc
gcgctcattcagcggtggtttgaacacatccatgagacgcagcccaacatctttgtcacg
tacaacggggacttcttcgactggccctttgtggagacccgtgctgcccaccatggcctg
aacatgtacagggagattggctttcagaaggacaaccagggagaatacaagtccagccag
gccatacacatggactgcctcaggtgggtcaagagagacagctacctgcccgtggggagc
cacaacctaaaggcggcagcgaaggccaagctgagctatgacccagtggagctggaccca
gaggagatgtgccgcatggccaccgagcagccacagacactggcaacgtactcggtgtca
gacgccgtggccacatattacctgtacatgaagtacgtccacccgttcatcttcgccctg
tgcaccatcattcctatggagccggatgaggttttgcgtaaaggctctggaacgctgtgt
gaggctctgctgatggtccaggccttccatgccaacatcatcttccccaacaagcaggag
caggagttcaacaagatgaccaacgacggtcatgtcatggacactgagacctatgtggga
ggtcatgtggaggccctggagtctggggtcttccgtagtgacatcccctgccgctttaaa
atgaaccctgctgcttttgacttcctccttcagagggttgagagaacccttcgtcacgct
attgaggaagaggagaatataccactggagcaagtcaccaatttcaatgaggtgtgtgag
gagatcaaaaagaagctggtctctttgaaagaggtgcccaacaggattgaatgtcctctc
atctaccatcttgatgtaggggccatgtaccccaacatcatcctgaccaatcgcctccag
ccgtctgccatggtggacgaggccacctgtgccgcctgcgactttaacaaaccgggcgcc
aactgccagcggaagatggcctggcagtggagaggagagatcatgccagcgagccgcagt
gagtttcatcgcatccagcagcaactggagtctgagaagttccctcctttcttccccaac
ggccccccgcgggccttccacagcctggaccgagaggagcaggcccgccatgagaagaaa
cgtcttgcagattactgtaggaaagcgtataagaaggtgcacgtcaccaagctggagacg
aggatcaccaccatctgccagagggagaactctttctatgtggacaccgtccgagccttc
agagatcgccgctatgagttcaaaggcctacacaaggtgtggaagaagaagctgtcccag
gcgcaggaccgcggggacgccgctgaggtgaagcgttgcaagaacatggagatcctctac
gagtccctgcagctggcccacaaatgcatcctcaactccttctacggctacgtcatgagg
aaaggagcccgctggtactccatggaaatggcggggatcgtgtgctacactggagcgaac
atcatcacccaggccagagagcttattgaacagatcgggaggcctttggagttggacact
gatgggatctggtgtgttctgcctaactcctttcctgagaactttgtcctcaaatcaacc
aatgagaagaaacccaaggtcaccatctcctatcctggagccatgcttaacatcatggtt
aaagagggcttcaccaatcaccagtaccaggagctggtggacccggccaatctgacctat
gagacgcgtgccgagaacagcatcttctttgaggtagacgggccttacttggccatgata
ctgccggcctccaaagaagagggcaagaagctgaagaaaaggtatgcagtgttcaatgag
gacggctctctggccgagctgaagggctttgaggtgaagcgtaggggagagctgcagctc
atcaagatcttccagtcctctgtgttcgaggccttcctgaagggcaccactctggaggag
gtctatgcctccgtgtccaaagtggccgactactggctggacgttctctacagcaaggcg
gccaacatgcccgacacagagctgtttgagctgatctcggagagccgctccatgtcccgt
aagctggaggactacggcgagcagaagtccacctccatcagcaccgccaagcgcctggcc
gagttcctgggcgaccagatggtgaaggacaaggggctgagttgtcgttacgtgatctca
cgcaaaccggaaggctcgccggtcactgagagagccataccgttggccatcttccaggca
gaacctggagtcaaaaagcatttcctgcgcaaatggctgaagatgccaggtcttcacgac
ctggacattagatcgatcctcgactggaactactacatcgagcgcctgggcagcgccatc
cagaagatcatcaccatccccgcggccctccagcaggtgaagaacccggtgcccagggtg
cgccacccggactggctgcacaagaagctgctggagaagaacgacatcttcaagcagaag
aagatcagcgagctcttcaccagcgaggggaagagacagctaccgaacgtggtccagccc
ggcgaggccaatgacatggaggactttgggaagcctccgcggcccctgcagccggccatc
ctcatcagcaccaagcgcaagcgcgtctcccagggcgaggacagccaggccgagtcccag
gagctggagctcacgcagtcctggagggagatcctgggcccgccgccctccaaggaggag
ctgctggtgtggctgcgctaccacaagaagaagtgggagctgcagctgcggcagaggaag
gagcgccgtaagaaacgacggctcgtagatggcgaggcccagccaggagggggcggtgtg
atccgggacgggccgaccacagcgctgggcaacttcctccgcaagacggcgcgtagcatc
ctggacatgccctggcagatcatacaggttgcagagaccagccacccaggcttgtttaag
ctgtgggccgtgatcggcagtgacctgcactgcatgaagctcaccatccccagggtgttc
tatgtcaaccagaggatcccgaagcaggacgaaggaccaacatacaaaaaggtcaaccga
atcctcccgcgctccaatgtggtgtgctacctttaccagtacacggttcctgaagacatg
taccaggagcacatcaacgagatcaacgcagacctctctgctcctgacatcgagggagtt
tatgagactcaggttcctctgctgttccgtgcgctggtgcagcttggctgtatgtgcatg
gtcaacaagcaggccgtgcgggacctcgccggccgagaggccgacacctttgacctcgag
aacctggacatgaggtcgctggctcagttcagctacctggaacctggcagtgtccggcac
atctacctgtaccaccacagccagggacacaaggggttgttcggcctctttattccgtcc
cagcgcaaggccagcgtgtttgtgctcgacacggtgcgcagtaaccagatgcccaacctg
ggcaacgtgtacgggacggagcgcgccgccctgctggagaagaccagcgaggagctgctg
cccccggagaagcaccagtttgaggtgcgggccgagagcgacgtgaaggccatctacaga
gccgtgcagcgcatactcctcaactacaaggaggagcggcgtggccccactctgattgcg
gtgcagtccaactgggagctgcggcgtctggcggcgggcatgggggtgctggaggagttc
ccggtggtaccggtgcacgtgcccgacgagatcagctacagcgtgctggactggcagcgc
cacggcgcccgccgcatgatccgacactacctcaacctggacagctgcctctcgcaggcc
tttgacatggccaggtactaccatctgcccgtgggcaacctgccacacgacgtgtccatc
ttcggctcggacctgtttctggcccgccacctgcgcaagcacaaccacctgctctggctc
tcgcccaccgcccggcccgacctggggggcaaggaggcggacgacagccgcctggtgatg
gagagcgatgaccgggcctccgtggagatcaacggccagggctgctactccacagtgtgt
gtggagctggacatccagagtctggcggtcaacaccatcctgcagtcgcagcacgtcaac
gacatggagggcggcgccagcatgggcgtgagcttcgacgtcatccagcactcctctctg
gaggacatgatgagtggcaaccaagcagccaatgccgtggccagctacgacgagacggcc
ctctgctccaacacgttcaggatcctgaagagcatggttgttggctgggtgcgagagatc
acgcagtacaacaacgtttacgccgacaaccaggtgatgcacttctaccgctggctgcga
tcgcccagctccctgctctatgacccagccctgcaccgcaccctgaacaacatgatgaag
aagatcttcctgcaattggttgctgagttcaagcgtctgggctccaatgtagtctatggg
aacttcaaccggctcatcctctgcaccaagaaacgtcacattgatgatgcaatcgcctat
gtcgagtacatcactaacagcatccactcacgggagatcttccactctctctcgctcacc
ttctcgcgctgctgggagttcctgctgtggatggatccagccaatcacggaggagtgaag
ggaaagctgccctcaagcgtcctctgcggagagaatggcaccggcaagaagaaaaaggaa
aagggcgatgggtctgaagaggagggcagtgaggacgaagatgacgaagacgaagtggct
gggcgagagggggagggcggtgatggtgaagacaatgttgaggacctgattgagagcagc
tggaacgtcatgcagtatcttccccaaacggcctcctgtcagaagtacttcctcatgatc
atctccgcttatattgcagctgtctatcacagcatgagggaggagctacggcgaaacgct
cccggggccactcccattaagaggcggggcggaagtcaggcttcccagcaggcagcagga
gacggcagctccctccctggcatgatcagcttctctcaggagtacatctctggcgagctg
acccagaacttcttcaccatcacgcagaagatccagaagaaggtgatgggcacacggaac
atgaccctgccctcggagatgttccctgtgctgcccggctcccacctgcccctccacaac
cctgccctggagttcatcaaatacgtctgtcaggtgctgtcgttggatgcaaacatcgtg
aaccaggtgaacaagctgaagcgagacctgctgcggctggtggatgtgggcgagttctcg
gaggacgcccagttccgtgacccgtgccaatcgtatgtcctgccggaggtcatctgccac
cactgcaacttctgccgcgaccttgacctctgcaaggacccttccatggcacaggacggc
acagttctgccccagtggttctgctccaactgccaggcccagtacgacacggactccata
gagatggcgctggtggccgcccttcagaagaagctgatgagctacaccctacaggacctg
gcgtgcactaaatgcaaaggggtgaaggaggccaacatgcctctgtactgccgttgcgct
ggcgatttcagcctcacgttctccatcaagagcttctccgagcagatcggagtgttccgg
aatatcgcggcccattacaagatggggttcctgcaggagaccatcgactggctgctcctc
atgactcctcagctggcctga

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