KEGG   Clupea harengus (Atlantic herring): 105891965
Entry
105891965         CDS       T09045                                 
Symbol
snx27b
Name
(RefSeq) sorting nexin-27b isoform X1
  KO
K17936  sorting nexin-27
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:char04131]
    105891965 (snx27b)
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:char04990]
    105891965 (snx27b)
Membrane trafficking [BR:char04131]
 Protein recycling
  Others
   Others
    105891965 (snx27b)
Domain-containing proteins not elsewhere classified [BR:char04990]
 Phox homology (PX) domain-containing proteins
  Sorting nexins
   105891965 (snx27b)
SSDB
Motif
Pfam: PX PDZ RA PDZ_6 SNX17-27-31_F1_FERM RA_2 SNX17_FERM_C PDZ_2 USP7_C2 VirE3 SNX17-31_F2_FERM
Other DBs
NCBI-GeneID: 105891965
NCBI-ProteinID: XP_031432950
Ensembl: ENSCHAG00000018734
UniProt: A0A6P8GD21
LinkDB
Position
11:8976962..8989618
AA seq 572 aa
MADIVEDYGINSAVPSLQHSSSRNGTNVSVSSAAGNESGPTVTTLTTGPRLVRIVKSDSG
YGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGISKGDRILEVNGVNVEGA
THKQVVDLIRAGERELVLAVLSVPQAETDSLEAADESPAACCYDYSDKQAVPISIPTYKH
VEQSSEKFVVYNVYMAGRQLCSKRYREFSILQQNLKREFGTYNFPKLPGKWPFSLSEQQL
DARRRGLEEYLEKACSIRVIGESDVMQEFLSESDENFNGASDVELRIAMPDKTTVTIRVR
KNSTTDQVYQAVVMRVGMDSITASYFALFEVINHTFVRKLAPNEFPHKLYVQNYTSAVAG
TCLTLRKWLFSAEEEVLLNDNQLAITYCFHQAVDDVKKGFIKVGEKSYQLQKLAEQKKMN
IYLSMLSTCEGYNEIVFPHCACDSRRKGHVVTAISIHHFKLHACTDDGTLENQVIAFEWS
EMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELRWRKELEEEVT
DKDNKNCSRDEYLPAAEKQKGWGHLNEEIITS
NT seq 1719 nt   +upstreamnt  +downstreamnt
atggcggatattgtcgaggattacggaattaattctgctgtcccctcattgcagcactcg
tcctctcgtaatgggactaacgttagtgtcagttctgcagccggtaacgagagcggacca
acagtaaccactttaacgacaggccctcggctagtgaggatagtgaagtccgattcgggc
tatggttttaatgtccgagggcaagtcagcgagggaggacagctccgtagcataaatggg
gaattgtacgcacctctccagcatgtcagcgctgtattgccaggaggcgcagcagataga
gcgggcatctcaaagggtgaccgaattcttgaggtcaatggggtgaacgtggaaggggcg
acccacaagcaggtggtcgatctgatccgggcaggggagcgggagctggtgctggcggtg
ctgtcggtgccgcaggccgagacagacagccttgaggcggctgacgagagcccagcggcg
tgttgctatgactacagcgataagcaggctgtgcccatctccatacccacctacaagcac
gtagagcagagctcggagaagtttgtggtgtataatgtgtacatggctggcaggcagctc
tgctccaagcgatatcgggagttttccatcctgcagcagaacctgaagagggagttcggc
acctacaacttccccaaactgccggggaagtggcccttctccctgtccgagcagcagctg
gacgcacggcgcaggggcctagaagagtacctggagaaagcatgttctatacgggtgatt
ggagaaagtgacgtgatgcaagagttcctgtctgaatcagatgagaactttaacggcgcg
tcagatgtggagctgagaatagccatgcctgacaaaacgacagtcacgatcagagttcga
aagaacagcaccaccgaccaggtctatcaggctgttgtgatgagagtcggaatggacagc
atcacagctagttactttgccctttttgaagtaatcaaccatacatttgtgcgtaagctg
gcccctaatgagttcccccataagctgtatgtgcagaactacacctctgctgtggccggc
acctgcctgacgctccgcaagtggctcttcagtgccgaggaggaggtgctgctcaacgac
aaccagctggccatcacctactgcttccaccaggctgtggatgatgtaaagaaggggttc
ataaaggtgggggagaagtcttatcagctccagaaactcgccgagcagaagaagatgaat
atttacttgagtatgctgagcacatgtgaaggctacaatgagattgtcttccctcactgc
gcgtgtgactccagacgcaaaggccacgtggtcaccgccatcagcatccaccacttcaag
ctgcacgcctgcactgacgacggcactctggagaatcaggtgattgcctttgagtggagt
gagatgcaacgctgggacacagacgaggagggcatggccttctgcttcgagtacgcccgc
ggagagaagaagccacgctgggtcaagatcttcaccccctatttcaactacatgcacgag
tgcttcgagagagtgttctgtgaactcaggtggaggaaagagctggaggaggaggtgact
gataaagacaataagaactgcagtagagatgaatatcttccagctgctgagaaacagaag
ggatgggggcacttgaatgaggagatcatcacctcttga

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