Clupea harengus (Atlantic herring): 105891965
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Entry
105891965 CDS
T09045
Symbol
snx27b
Name
(RefSeq) sorting nexin-27b isoform X1
KO
K17936
sorting nexin-27
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105891965 (snx27b)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
char04990
]
105891965 (snx27b)
Membrane trafficking [BR:
char04131
]
Protein recycling
Others
Others
105891965 (snx27b)
Domain-containing proteins not elsewhere classified [BR:
char04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
105891965 (snx27b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
RA_2
SNX17_FERM_C
PDZ_2
USP7_C2
VirE3
SNX17-31_F2_FERM
Motif
Other DBs
NCBI-GeneID:
105891965
NCBI-ProteinID:
XP_031432950
Ensembl:
ENSCHAG00000018734
UniProt:
A0A6P8GD21
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Position
11:8976962..8989618
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AA seq
572 aa
AA seq
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MADIVEDYGINSAVPSLQHSSSRNGTNVSVSSAAGNESGPTVTTLTTGPRLVRIVKSDSG
YGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGISKGDRILEVNGVNVEGA
THKQVVDLIRAGERELVLAVLSVPQAETDSLEAADESPAACCYDYSDKQAVPISIPTYKH
VEQSSEKFVVYNVYMAGRQLCSKRYREFSILQQNLKREFGTYNFPKLPGKWPFSLSEQQL
DARRRGLEEYLEKACSIRVIGESDVMQEFLSESDENFNGASDVELRIAMPDKTTVTIRVR
KNSTTDQVYQAVVMRVGMDSITASYFALFEVINHTFVRKLAPNEFPHKLYVQNYTSAVAG
TCLTLRKWLFSAEEEVLLNDNQLAITYCFHQAVDDVKKGFIKVGEKSYQLQKLAEQKKMN
IYLSMLSTCEGYNEIVFPHCACDSRRKGHVVTAISIHHFKLHACTDDGTLENQVIAFEWS
EMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELRWRKELEEEVT
DKDNKNCSRDEYLPAAEKQKGWGHLNEEIITS
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggcggatattgtcgaggattacggaattaattctgctgtcccctcattgcagcactcg
tcctctcgtaatgggactaacgttagtgtcagttctgcagccggtaacgagagcggacca
acagtaaccactttaacgacaggccctcggctagtgaggatagtgaagtccgattcgggc
tatggttttaatgtccgagggcaagtcagcgagggaggacagctccgtagcataaatggg
gaattgtacgcacctctccagcatgtcagcgctgtattgccaggaggcgcagcagataga
gcgggcatctcaaagggtgaccgaattcttgaggtcaatggggtgaacgtggaaggggcg
acccacaagcaggtggtcgatctgatccgggcaggggagcgggagctggtgctggcggtg
ctgtcggtgccgcaggccgagacagacagccttgaggcggctgacgagagcccagcggcg
tgttgctatgactacagcgataagcaggctgtgcccatctccatacccacctacaagcac
gtagagcagagctcggagaagtttgtggtgtataatgtgtacatggctggcaggcagctc
tgctccaagcgatatcgggagttttccatcctgcagcagaacctgaagagggagttcggc
acctacaacttccccaaactgccggggaagtggcccttctccctgtccgagcagcagctg
gacgcacggcgcaggggcctagaagagtacctggagaaagcatgttctatacgggtgatt
ggagaaagtgacgtgatgcaagagttcctgtctgaatcagatgagaactttaacggcgcg
tcagatgtggagctgagaatagccatgcctgacaaaacgacagtcacgatcagagttcga
aagaacagcaccaccgaccaggtctatcaggctgttgtgatgagagtcggaatggacagc
atcacagctagttactttgccctttttgaagtaatcaaccatacatttgtgcgtaagctg
gcccctaatgagttcccccataagctgtatgtgcagaactacacctctgctgtggccggc
acctgcctgacgctccgcaagtggctcttcagtgccgaggaggaggtgctgctcaacgac
aaccagctggccatcacctactgcttccaccaggctgtggatgatgtaaagaaggggttc
ataaaggtgggggagaagtcttatcagctccagaaactcgccgagcagaagaagatgaat
atttacttgagtatgctgagcacatgtgaaggctacaatgagattgtcttccctcactgc
gcgtgtgactccagacgcaaaggccacgtggtcaccgccatcagcatccaccacttcaag
ctgcacgcctgcactgacgacggcactctggagaatcaggtgattgcctttgagtggagt
gagatgcaacgctgggacacagacgaggagggcatggccttctgcttcgagtacgcccgc
ggagagaagaagccacgctgggtcaagatcttcaccccctatttcaactacatgcacgag
tgcttcgagagagtgttctgtgaactcaggtggaggaaagagctggaggaggaggtgact
gataaagacaataagaactgcagtagagatgaatatcttccagctgctgagaaacagaag
ggatgggggcacttgaatgaggagatcatcacctcttga
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