Clupea harengus (Atlantic herring): 105892023
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Entry
105892023 CDS
T09045
Symbol
irx1b
Name
(RefSeq) LOW QUALITY PROTEIN: iroquois-class homeodomain protein IRX-1b
KO
K24889
iroquois-class homeodomain protein IRX
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105892023 (irx1b)
Transcription factors [BR:
char03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
105892023 (irx1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
105892023
NCBI-ProteinID:
XP_012673694
UniProt:
A0A6P3VJ91
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Position
19:15853568..15856665
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AA seq
455 aa
AA seq
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MSFSQLGYPQFLSASPEAYGGERTGVLSASTREGGSESGGNPSGGAPAVTPMLGMYASPW
TAQNYSAFLPYNSAELALLSQMGSQYELKDSPGAHPSGFVHTAPGFYPYGQYQYGDPSRA
KSATRETTSTLKAWLQEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKV
TWGRSAEDRDGRIFDSDIEEDHDKNEDDEEIDLESIDVVKTDEKREEENLEQVSLDKPSA
GEHVNVENMEPKRTLPLPELKGVNESVAINKEPQVVKNVPALSPDGPGCQRPSNTKPKIW
SLAETATSPDNCQKVGALTSPVGLRTSLQSHHPAFIPTHGIYTCQIGKLHNWAASAAFLS
ANSLMNVRSLLGVNQSSHNYSHSPVAHTKRSPSPAGHSGPEGDSENSSDGFSPQRHDQEN
VQRIEPRTPVLRSPFPQMHDRSHHEATQRVLKTIS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttcgcagctgggctacccccagtttttaagcgcctccccagaggcttacgga
ggagagagaaccggggttttgtctgcatcgacccgagaagggggctctgagagcggtgga
aatccttctggaggagcgccggcagtcacaccgatgttgggcatgtatgcaagcccgtgg
actgcacaaaactatagtgcatttctcccctataacagcgccgaactggccctactgtcc
caaatgggttcccaatatgaactgaaggattctccgggtgcccatccctcgggcttcgtg
catacggcccccgggttttacccgtacggtcagtaccaatacggcgacccgtcccgagcg
aagagtgccacccgggagactacaagcacgctgaaagcctggctgcaggagcacaagaag
aacccttatcccaccaagggcgagaagatcatgctggccatcatcaccaagatgaccctt
acccaagtgtccacctggttcgccaacgcgcgtagacgactcaaaaaggagaacaaggtc
acgtggggacgcagcgcggaggaccgtgacggcaggatatttgacagtgacattgaggag
gatcatgacaagaatgaggacgacgaagaaattgatttggaaagcatcgacgtcgtcaaa
accgacgaaaaacgagaggaagagaatctggaacaagtgtccctcgacaagccaagtgct
ggtgaacatgtcaatgtggaaaatatggaaccaaaacggactttacctcttcccgagctc
aagggtgtgaatgagtcggttgctattaataaagaaccacaagttgtcaaaaacgttcct
gcactttctcccgacggcccgggatgccaacggccctcaaacactaagccaaaaatatgg
tctttggcggagacggcgactagccctgacaactgtcagaaagtaggtgcgctcacgtcc
cccgtaggcctgcgaacctctctgcagtctcaccacccagcgtttatcccgactcacgga
atatacacttgccagattggaaaactgcataactgggcggcaagtgccgcttttcttagc
gccaactccctaatgaacgtcaggtcacttctgggtgtcaatcaaagcagtcacaactac
agccacagtcccgtggcgcacaccaagaggtcaccgtctccggctgggcattcaggccca
gagggagacagcgaaaattcgtcggacggcttcagccctcaacgtcatgatcaggaaaac
gtccagaggatcgagccacggacaccagtactgagatcaccattcccacaaatgcatgac
aggtctcaccacgaagcaacacagcgggttttgaagaccatttcctga
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