Clupea harengus (Atlantic herring): 105892061
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Entry
105892061 CDS
T09045
Symbol
cica
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105892061 (cica)
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
105892061 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_Cic_C
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Serglycin
Motif
Other DBs
NCBI-GeneID:
105892061
NCBI-ProteinID:
XP_012673737
UniProt:
A0A6P3VKP2
LinkDB
All DBs
Position
19:12874791..12899087
Genome browser
AA seq
2558 aa
AA seq
DB search
MKPLKKGGRPSPPSTRAKAGKRRGQSDSSPEQDQSKASPPSPKRHTPPSSHSESSREETP
RTTATPDRDESLSREGDCGKAGAAEERPSSCRSSDSNSSVASSNSSPNPSASRKTATFKA
RVPKKKYTSEHCSSSSGVSTTGAGNHGNPSTPPLSSSSSGSGAHNNSVTAQHQVSTASSQ
QTPASTQTPSQPAASMDPHSHSQSGAATAGAGQYGDREAAERPLVPSPPRCSSTDTASEH
SADLEVTATAALSTPTPSDPQPSVERPHQHPQAPPSHCNSNSLQDSLTGGLEDALAKGLK
NQRVLARQGSGMFLAGVVRHVSGEQGSVEVQLNGEKGLSFYPYQPTEGAVDLVLDSPPPG
AAQVAIGTHVCVPFGGGHEGSEGAQQLYREGLVTQVDSHPAVSFPYRVLLRDEPGAAAVH
DRGAQEEGGGASPSPVQAVWVSRQSLRLLVPPWDLDPGSRAWEDREDMEVERELSKFIAG
PFHGRTLLPHPASAPPSSSSYSSSSSTIAAAGGVMMTSVLNMAGGRDWEREREQEIEREM
ERQREREREREREREREREREREREREREREREREMERLQQQHHQQQQTPEEDMEVTIFN
TTPMRDGGIGIAPGGKPLGVSQPRHILSKPPYLSVVRNIGPPLAHLALNPHAPPSSVLLG
LDGATPVMPSTPQLPPLPPSSRGVLDKPPSSNSHASSGGSGSGGGSGSGSRSRTPLTAAQ
QKYKKGDVVCTPTGIRKKFNGKQWRRLCSREGCSKESQRRGYCSRHLSMRTKEMEAGGGG
PGLGRDRSGASSTGTLTPSDLRLGSGRTSSEFDWDDTSRDSSEASSRGGDSRPRLVLPSL
LPHDLSRDLSRFDFDECEAANMLVSLGSSRSGTPSFSPVSNQSPFSPAPSPSPSPLFGFR
PANFSPITAPPSLNPRRPRHLSGTKLGTPGSDRERHLSGVVSTYQTNLTFTVPMSPSKRK
PDAQPPSLPMAPSAPHDYGKPEVQQAQLVVGDPALGLNAAGFRVLSPQSQPPTPSFSRPR
SAASRPSSSAASTPPPMLVSPTPPSPLPQEPSPRRGLPLRDSPVIVRNPDVPLAKFSEGP
LGSRRGSGGTVAGGGAGVGGGGGGRPRDNGGQPLHLSGTLQAPVPINGASATNGAVLLRN
PGSTLVLVTSAQSLTTASTTRSAHTGLVGVSSSSGIGGAGPTIASGGTGEGRERERNPGE
HGDTHGGVLPQPVACHPTPTALLPLIVPAESPHPAPRKDIIMGRPGTVWTNVEPRSVPVF
PWHSLVPFLEPSQSNSSGAQPTDGQPLVNQSKEPRCGVALVSDNRSGQSSTERGSPSRPP
PSAEDPPPEREAGDSETESDADDLFLPAVSQDPAPSTGQAKRRTQSLSALPKDGDKKREK
DHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVK
EAHFRAHPDWKWCNKDRRKSLSEGRGTPGAKELRERSASESAEAQSQGVDQKVVGSSWTP
GAERRSGPLGVQHPRPRAFSQSAVHSLERRERERDMEKMCQEGGSGSRPRPSGSSRLQRG
ISEDVTSDEERMVICEEGDDDVIDDSFTEGSIDLKCKERVTDSDEENASADEADGKRAFQ
PVVRPSHSFSPGRDPSKGVGARGRDDSSLERMTNMAGGLDSGRLKDVKEEAEGLSPLPTH
SLSSSTTTHHPGNGVTQVVGQVRMAHTMVTSVMRPVVSTPVPIASKPGDNGLHVDKKTKL
LIGAGGAAAAAGGGAIAVGGGYFPSSSPKPVEGQGGLVTSLVLGGAFPNQPTVQLLTPPQ
SLPCSAASPTHANGALPLSLLQPQFLPTSALTSPAGGKPVTQVHYILPTLPANPKSPSPQ
QPTSVLTLPTASPTHMSLANGVHSGAGPGIRYASVPAMGGFSPGGGVQAQTPILQSKMLV
PMATMRTGSTPPQPISLVAPPLPVQNGAQPGSKIIQIAPMPVVQTNVHPSAAVHPGNSFP
VSMGTATVMAPGSAPSQTVLLTPPPTRITYVQSTPGVAAPMPLVSTATVCPPQQAPPLSG
TAFLQSPLATLGFTAIAPAGQALVQPIAAGQPPLLAPAPPPSCPSQPAAANGTPRQVLTA
IYPAPSVTLATGVMSLATVPPNMTLPPPSSNPDSPSSTLHIGTATPVTAQLAEHMQAQPH
ADRQVGMSPVAEETERQSAAEKHTDAEAQAETPGHTAATAQAGGPALHPTPTGRHGSTQV
KAQDAANQSETDRERKMEEGGASWRDQAAEGQGSDRASKGHSTDGSGKEEHSKEVRRKES
NSPPPPSSGLEPPPPPPQNDRDNPTVKKAKSRPPPLKRTFEPVDRVMSGSYFEECLAELP
EFRPEEVLPSPTLQSLATSPRAILGSYRKKRRNSTDLDSADDPSSPRRKSRRLSSCSSEP
NTPKSAAKCEGEIFTFDRAGESEDTLGELGERTSYSSLRRTLDQRRALVMTLFHDYGFFP
STQATAAFQASHSDIFPTKVCLQLKIREVRQKIMQTATPGASEGLGSVGVMGVTGSDSAS
TPGPSSVPLREESGAEPDERGSGHEETNCTGESQDSTR
NT seq
7677 nt
NT seq
+upstream
nt +downstream
nt
atgaagccattaaagaaggggggcagaccctcgcccccatccacccgtgccaaggcaggg
aagagacggggccagtcggacagcagtccggagcaggaccagtccaaagcctcgcctccc
tccccgaaaagacacacgcctccctcgtcccactcggagtcctcccgcgaggagacccct
cgaaccacggcgaccccggaccgtgatgagagcctctctcgcgagggggattgtgggaag
gctggggcagcggaggagcgcccgagcagctgcaggtcgtcagacagcaacagcagcgtg
gccagctccaacagcagccccaacccctcggccagccgcaagacggccaccttcaaagcc
cgcgtgcccaagaagaagtacacctccgagcactgctcctcatcctccggtgtttccaca
actggcgccggaaaccatggcaaccccagcacgcctccgctcagtagcagcagcagcggc
agtggtgcacacaataacagcgtcactgctcagcatcaggtcagcactgccagcagccag
cagaccccagccagcacacagacccccagccagcctgcagccagcatggacccccacagc
cacagccagagcggggcggccacagccggtgccggccagtacggggacagagaagcagcg
gagaggcctctggttcccagccccccacgctgctcttccacagacactgccagtgagcac
tcagccgatctggaggtgacagcaaccgctgccttgagtacaccgacaccctcagacccc
cagcccagtgtggagcgcccccaccagcacccccaagcgccaccctcacactgtaactcc
aattccttacaggacagcctgactggaggtctggaagatgccctagcaaaagggctgaag
aaccagcgcgtgctggcacggcagggttccggcatgttcctagccggtgtggtacggcac
gtgagcggggagcaggggagcgtggaagtccagctcaacggggaaaagggcttaagtttc
tatccctaccagccgaccgaaggagcagtagaccttgtgctagactccccacctccaggc
gcagcacaggtcgccattgggacccatgtgtgcgtgccatttggagggggccacgagggc
agcgaaggggcccaacagctctaccgggaggggctggtgacgcaggtggattcccacccc
gccgtgtcattcccctaccgcgtgctgctgagggatgagccaggagccgctgccgtacat
gacaggggggctcaggaggagggcggcggagcctcccccagtcctgtgcaggctgtgtgg
gtgtcccggcagagcctgcgtctcctggtgccaccgtgggatctggatccgggcagccgt
gcctgggaggaccgcgaggacatggaagtggagcgcgaactctcaaagttcatcgcaggg
ccgttccacgggaggacgttgctgcctcatccagcatctgcacccccatcttcatcctcg
tactcctcctcttcctcgaccattgctgcagctgggggtgtgatgatgacgtcggtgctt
aacatggcaggtggccgagactgggaacgagagagggagcaagagattgagagagagatg
gagcgacagagggaacgagagcgagagagggaaagagagagggaaagggaacgagagagg
gaacgagagagggaaagggagagagaaagggaaagagagcgggagatggagaggctccag
caacagcaccaccaacagcagcagactcctgaggaggacatggaagtgacgatattcaac
acaacaccgatgagagatgggggaattgggatcgcacccggaggcaagcccctgggtgtg
tcccaaccccgacacatcctctctaagccaccgtacctgtcagtggtgcgcaacatcgga
ccccccctggcccacctggctctcaacccacacgcacccccatcttctgtgctgttgggt
ctagatggagccacccccgtgatgccctcgacacctcagctgcccccacttccgccctcc
tcgcggggagtcctggacaagcctccttcctcaaactcccacgcctcctcaggggggtct
ggctccggcgggggctcgggttcggggtctcggtcccggacccctctgacagcggcacaa
cagaagtacaagaagggcgatgtggtgtgcaccccgaccgggatccgtaagaagttcaac
ggcaagcagtggcgtcggctgtgctcgcgcgagggatgctcaaaggagtcacagcgcaga
ggttactgctccaggcacctgtccatgcgcaccaaggagatggaggccggagggggggga
cctgggctgggccgtgaccgcagtggagccagcagcacaggtacgctcaccccctctgac
ctcagactggggagtgggcgcaccagcagcgagtttgactgggatgacacgtctcgcgac
agcagcgaggccagcagccgggggggcgactcgcgtcctcgccttgtgcttccctcgctc
ctgccccacgacctctcccgcgacctctcgcgtttcgacttcgatgagtgcgaggcggcc
aacatgctggtgtcgctcggaagctcccgctcgggcacaccctcgttctcgcccgtgtcc
aaccagtcgcccttttcaccagccccttccccatccccctcgcccctctttggcttccga
ccggccaacttcagcccaatcacagcacccccttctctcaacccacgccggcctcgccac
ctgagtggcaccaagctgggcacgccaggatcggatagagagcggcacctgtcgggcgtg
gtgtctacctaccagaccaacctcactttcaccgtgcccatgagtccgagcaagcgcaag
cccgatgcacagcccccgtctctgcccatggccccttctgccccgcatgactacggcaag
ccagaggtccagcaggcccagctggtggtgggtgacccagcactggggctgaatgcagct
ggtttcagagtcttatccccccaaagccagcctcccaccccgtcattctcccggccccgc
agcgctgccagccgcccctcgtcctctgccgcttccacccctccacccatgctggtgtcc
cccacgccgccttcccccttgccccaggagcctagccctcgccggggcctgccgctccgc
gactcccctgtcatcgtgcgcaacccggatgtcccacttgcaaagttcagcgagggaccc
ctgggcagccggagaggcagtggaggaaccgtggcaggtggtggagcgggtgtgggaggt
ggaggcggaggtcgcccacgagacaatggaggccagcccctgcacctcagtggcaccttg
caggcccccgtgcccatcaacggcgccagcgccaccaatggagccgtgctcctgcgtaac
cccggctccacccttgtgctcgttacctccgcccagtcgctgacgaccgcttccaccacc
cgctccgcccacacaggcttggtaggggtctcttcctccagtggcatcggtggagccggt
ccgaccatcgccagcgggggcacaggagaggggagagagagagagaggaaccccggggaa
cacggagacacccacggaggggtgctgcctcagccggtggcctgccacccaactcccact
gccctgctgccgctcatcgtgcccgcagaatccccccaccccgccccacgcaaggacatc
atcatgggacgtccaggaacagtttggaccaatgtggagcctcgctcagtcccagtcttt
ccttggcattcattggtcccctttctggagcccagccagtcaaactcttctggagcccag
cctacggatggccagcctcttgtgaatcagagcaaagagcctcgctgtggagtagctctt
gtgagtgacaaccgcagcggtcaatcaagcacagagagaggctcaccatcccgccctccc
ccttctgctgaggaccctcccccagagcgcgaagctggcgacagtgaaacagaaagtgat
gcagatgacttgtttttaccagcagtgtcccaggacccagccccctccacaggccaagcg
aagaggcgcacacagtccctcagtgccctccccaaagatggagacaagaagagggagaaa
gaccacatccgacggcccatgaatgccttcatgatcttcagcaagcgtcatcgggcactg
gtgcaccagaggcaccccaaccaggacaaccgcacggtcagcaagatcctgggggagtgg
tggtatgcactagggcccaaggagaagcagaagtaccatgacctcgccttccaggtgaaa
gaagcccacttcagagcacacccagactggaagtggtgtaataaagaccgcaggaagtct
ctctccgagggccgtgggaccccaggggccaaagagctgcgggagcgcagcgcctccgag
agcgcagaggcccagtctcagggagtggaccagaaggtagtggggtcgagctggaccccc
ggagcagagcgtcgctcgggccccctgggagtacaacaccctcggccccgcgctttctcc
cagagtgccgtgcacagcctggagaggagggagcgagagagagacatggagaaaatgtgt
caggaaggagggagtgggtcccgcccgcggccgtccggctcgtctaggctgcagcggggg
atcagtgaggacgtgaccagcgacgaggagcgcatggtcatctgcgaggagggcgacgat
gacgtcatagatgactcttttaccgagggctctatagacctgaagtgcaaggagcgggtg
acagacagtgatgaggagaacgcgtccgcagatgaggccgacggcaagcgagccttccag
cctgttgtccgtccctcgcattccttctctcccggcagagacccatcaaaaggtgtgggg
gcccgtggaagagacgacagctcactggagaggatgaccaacatggcaggtggactggac
agcgggagactcaaggatgtgaaagaagaagctgaaggattgtcaccacttcccactcac
tccctctcatcctccacgaccactcaccaccccgggaatggtgtgacccaggtggtgggc
caggtgcgaatggcccacaccatggtgaccagcgtgatgcgacccgtggtcagcaccccc
gtgcccatcgccagcaagcctggcgacaacggcctgcacgtggacaagaagaccaagcta
ctgatcggagcaggaggagcagcagcagcagcaggaggaggtgccatagcagtagggggt
gggtacttcccctcgtcctctcccaaaccggtggaggggcagggggggctggtcaccagc
ctggtgctgggaggggccttccccaaccagcccaccgttcagctcctcaccccgccccag
tccctcccctgctctgccgctagccccacccacgctaacggtgccctccccctgtccctg
ctgcagccccaattcctccccacctccgcgctcacatcccccgctgggggcaagcctgtc
actcaggtgcattacatcctgcccaccctgcccgccaaccccaagagcccctccccgcag
cagccaaccagtgtcctcactttgcccacagcctcgcccacccacatgtccttggccaat
ggtgtgcattcgggggcaggaccagggataagatatgcctcagttcctgcaatgggcgga
ttcagcccaggaggaggagttcaagcacagacccccatcttgcagagcaagatgctggtt
cccatggcgaccatgagaacaggctccacgcctccgcagcccatctctctggtagccccc
ccacttcctgttcaaaatggtgctcaaccaggaagtaagatcattcagattgctccgatg
cctgtggtccagaccaatgttcatccctcagcagcagtgcaccctgggaattccttcccc
gtttccatgggaacagcgactgttatggctccgggctcggctccctcacagactgttctg
cttactcctccacccacaaggatcacttatgtgcagtcaaccccgggcgtggctgcccct
atgccactggtctccacagcaacggtctgcccccctcagcaggctccacctctctctggt
acagcgttcctgcaatcacccctggcaactctgggtttcactgccatagcacctgctggt
caggccctggtccagccaattgcagcaggtcagccccccctcttggccccagctcctccc
cccagctgtccatcacagcccgccgcagccaatggaactccccgccaagttctcacagcc
atctaccctgcccccagcgtcaccctagcaacaggggtgatgtctttggcaactgtaccc
ccaaacatgacccttccccccccttcctccaacccagactctccctcctccaccctgcac
atagggacagccacacctgtgacagcgcagctggcagagcacatgcaggcgcagcctcat
gcagacagacaggtgggcatgtctcccgtcgccgaggagacggagaggcagagcgcagcg
gagaagcacacggacgcagaagcacaggcggaaaccccgggccatactgcagcaacagca
caagcaggcggcccagccctgcaccccacacccactggtcgccatggtagcacgcaggtc
aaggctcaggatgcagccaatcagagtgagacagatagagagaggaagatggaggagggt
ggtgcctcatggcgagaccaagcggctgaaggacaggggtccgatagggcctccaagggc
cacagcactgacgggagtgggaaggaggaacacagcaaagaggtgagacgtaaggaatcc
aactcccccccgcctccttcctcaggactggagccccctcctccccctcctcagaatgac
agagacaaccctaccgtcaagaaggccaagtcccgccccccgcccctcaagaggaccttt
gagcctgtcgacagggtgatgtcagggtcatacttcgaggagtgtctggccgagctgccg
gagtttcgacctgaggaggtgctgccctcccccaccctgcagagcctggccacctccccc
cgagccatcctggggagctaccgcaagaagaggaggaactccactgatttagactctgca
gatgaccccagctctcctaggaggaagagtcgccggctgtccagctgtagctccgagccc
aacacacccaaaagcgctgccaagtgtgagggggagatcttcacctttgatagagcagga
gagtcggaggacacgttgggggagttgggggagcgcacttcgtactcctcactgcgccgc
actctggaccagcgtcgggccctcgtcatgacgctcttccatgactacggcttcttcccc
tcaacccaggccacggctgcctttcaggccagccactcggacatcttccccaccaaggtg
tgcctgcagctgaagatccgtgaggtgcgacagaagatcatgcagacggccacgcccggg
gcctccgagggcctggggtcagtgggggtgatgggcgtgacgggctcagactccgcctcc
acccctggcccgtccagcgtcccactgcgagaggagagtggggcggagcccgacgaaagg
gggagtggtcacgaggagaccaactgcacgggcgaatcgcaggattccaccagatga
DBGET
integrated database retrieval system
