Clupea harengus (Atlantic herring): 105892195
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Entry
105892195 CDS
T09045
Symbol
gtf2f1
Name
(RefSeq) general transcription factor IIF subunit 1 isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105892195 (gtf2f1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105892195 (gtf2f1)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
105892195 (gtf2f1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
105892195
NCBI-ProteinID:
XP_012673884
Ensembl:
ENSCHAG00000008618
UniProt:
A0A6P3VJK9
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All DBs
Position
1:1661811..1670809
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AA seq
553 aa
AA seq
DB search
MASLGGSSSGTEYTVRVPKNTNKKYNIMAFNAGDKVNCSAWTQARMERDMSNRRMYAGEE
SEEGAAGSEFGKKQREEARRKKYGIVTREFKVDDQPWILKVNGKAGKRFKGQKKGGVTEN
ASYYIFTQCPDGAFEAFPVHGWYNFVPQAKHRTLTAEEAEEEWGRRNKVVNHFSIMLQRR
LRESDRGGAGDDDDDDDEGGKGGKKKKKKGGRGGGDLRITDLEDDLEMSSDESGSSAGED
GEGKPKTKKKAKGKGKKKKKNDSDKSHGEDSDDGDFEGLEVDYISDETSSEEEDAEKAKP
NKGQDVPKGIDEMSESEEESEEEKPNEEETKEEEEEDEGKKTPVHMEKKKKKGVVDVPHQ
RKEPNKNSSGESESSEDSDIDGEATSALFMVKKRTPPKRSGGRGSAGSSKTGSRPGTPSI
DSAATSSTLRAAASKLEQGKGKRQPAAASADTPASKRLKMDPSPQSPSGKSTPQPSSGKS
TPSASSDVQLTEEAVRRYLIRKPMTTKDLLKKFQTKRTGLSSDQTVNVLAQILKKLNPER
KNINDKMHFYLTE
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcactgggggggagcagttcaggtacagaatacacggtccgagtaccaaaaaat
acaaataagaaatacaacatcatggctttcaatgctggcgacaaggtgaactgctctgcc
tggacccaggcccgcatggagcgtgacatgagcaacagacggatgtacgctggcgaggag
tctgaggagggagcggccggaagcgagttcgggaagaagcagagggaggaggcgcgccgg
aagaagtacggcatcgtgacccgggagttcaaggtggacgaccagccctggatcctcaag
gttaatgggaaggcaggcaaaaggttcaagggtcagaagaaaggaggggtgacggagaac
gcctcctactacatcttcacccagtgtcccgacggggcctttgaggccttccctgtccac
ggctggtacaacttcgtcccccaggccaagcaccgcacgctgacggcggaggaagccgag
gaggagtggggcaggagaaacaaggtggtgaaccacttcagcatcatgctccagcggcgt
ctgagggagtcggaccgcggcggcgccggcgacgatgacgacgacgacgacgagggcggg
aagggcggcaagaagaagaagaagaagggcggcaggggaggcggcgacctgcgcatcacc
gacctggaggacgacctggagatgagcagcgacgagagcggcagcagtgctggagaagat
ggagagggcaagccaaagacaaagaagaaagccaaggggaaggggaagaagaagaagaag
aacgacagcgacaaaagccatggggaggacagtgacgatggcgactttgaaggtttagaa
gtcgactacatatcagatgaaaccagctctgaagaagaggacgcagagaaggccaaaccc
aacaaaggacaggacgtccctaaaggcattgacgagatgtctgagagtgaagaagaaagc
gaggaggagaaaccgaatgaagaagagactaaagaagaggaagaggaggacgaagggaag
aagacccctgtgcacatggagaagaagaagaagaaaggtgtggtagacgttccacaccag
aggaaagaaccaaacaaaaacagcagcggagaatcggagagctcagaggacagcgacatc
gatggagaggccacatctgctctcttcatggtgaagaagcgcaccccacctaaacggagc
ggagggcgtgggtcagccggaagctccaaaacgggcagtcgccccggcacaccgtccatc
gacagcgccgccacctccagcacactgcgcgcagcagccagcaagctggagcaaggtaaa
gggaagcgtcaaccggcagcggccagcgcagacaccccagcatccaagaggctgaagatg
gacccttccccccagagcccttcgggaaagagcacacctcagccctcatctgggaaatcc
acgcccagcgccagcagtgatgtgcagctgacagaagaagccgtacgtcggtatctgatt
cgcaagcccatgaccaccaaggacctgttgaagaagttccagacaaagcgcacgggactc
agtagcgaccaaacagtcaacgtgctcgcccagatcctcaagaagctcaatccagagagg
aagaacatcaatgacaagatgcatttctaccttactgagtga
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