Clupea harengus (Atlantic herring): 105892215
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Entry
105892215 CDS
T09045
Symbol
colgalt1b
Name
(RefSeq) procollagen galactosyltransferase 1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char00310
Lysine degradation
char00514
Other types of O-glycan biosynthesis
char01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
char00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
105892215 (colgalt1b)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
105892215 (colgalt1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
char01003
]
105892215 (colgalt1b)
Enzymes [BR:
char01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
105892215 (colgalt1b)
Glycosyltransferases [BR:
char01003
]
O-Glycan biosynthesis
O-linked Gal type
105892215 (colgalt1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
Motif
Other DBs
NCBI-GeneID:
105892215
NCBI-ProteinID:
XP_031418543
Ensembl:
ENSCHAG00000020672
UniProt:
A0A6P8EQW9
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Position
24:17844386..17863685
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AA seq
608 aa
AA seq
DB search
MHRATLLLSTLLTLLVPGPARGYFTEERWSPESPLLAPRVLVALVCRNSAHSLPYFLGAI
DRLNYPKDRIAVWVATDHNIDNTTAILREWLIQVQKLYHYVEWRPQEEPSAYEDEMGPKH
WTYLRYEHVMKLRQAALDAARDMWSDYFLVADCDNLLTDRDVLWKLIQEDKTIVAPMLES
RAAYSNFWCGMTSQGYYKRTPAYMPMRRQERRGCFAVPMVHSTFLIDLRKEASRQLAFYP
PHPDYSWAFDDVIVFAFSVRMAEVQMFLCNKETYGYFPVPLRGHNTLQDEADSFLHSLLE
YMVKNPTMEPSVHLTVTPKQPDKIGFDEVFMINLLRRTDRRDRMLRTLYEQDITCKVIAA
VDGKALNVSQIEEQGIKMLPGYSDPYHGRPLTKGELGCFLSHYNIWKEIVDRGLKTSLVI
EDDLRFEVFFKRRLQNIMQEVESQGLEWDLIYIGRKRMQVDHSEKSVPNIHNLVEADYSY
WTLGYMMSLNGAKKLLAVKPLTKMLPVDEFLPVMYNKHPVKDYMTHFERRDLRAFSAEPL
LVYPTHYTGDPGYVSDTETSTVWDNEGLRTDWDRKRSHKTREQEELSMEAQNSDVLQSPL
ESAARDEL
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgggcgactttactgctctctacgctgctgacgcttctggttcccgggccggcc
cgtggatacttcacggaggagcgctggagtcccgaatcccccctgctcgctccccgggtc
ctggtcgctctggtgtgccgcaattcagcgcactccttgccttatttccttggagctatc
gaccgcctgaactacccaaaggatcgcattgccgtttgggtggcaacagaccataatatt
gacaacaccacggcgatcctgagggagtggctgatccaggtgcagaagctctaccactat
gtggagtggaggccccaggaggagccgagtgcctacgaagatgaaatgggtccgaagcat
tggacctacctgcggtatgagcatgtgatgaaactgcgacaggctgcattggacgcagcc
cgtgacatgtggtccgactacttcctggtggcagactgtgataacctgctgacagaccga
gatgtcctgtggaagctgattcaggaggataagaccatagtggcccccatgctggagtcc
agagcggcctattccaacttctggtgtgggatgacctcacagggctactacaagcgcacc
ccggcatacatgcccatgcgtcgccaggagcgacgaggctgcttcgccgtgcccatggtc
cactccaccttcctcatagacctgcgcaaggaagcctcgcgccagctggccttctacccg
ccacacccggactactcctgggcctttgacgacgtcatcgtctttgccttctccgtgcgc
atggctgaggtgcagatgtttctgtgtaataaagagacctatggctacttccccgtgcct
ctgcggggacacaacaccctgcaggacgaggccgacagcttcctgcactcgctgctggag
tacatggtaaagaatcctactatggaaccatctgttcacctcacagtaactcccaagcag
ccagacaagataggctttgatgaggtgttcatgattaacctgctgaggcgaactgaccgg
agggatcggatgctgaggaccctctatgaacaggacatcacctgcaaagtcatcgctgca
gtggatggcaaagcgttgaatgtgagtcagattgaagagcagggcatcaagatgttgccg
ggatacagtgacccataccacggccgtcccctgaccaagggggaactcggttgcttcctc
tcccactacaacatctggaaggagattgtggatcgcggtctgaagacgtccctggtgatc
gaggacgaccttcgattcgaagtgttctttaagcggcggctgcagaacatcatgcaggag
gtggagagccaaggcctggagtgggacctcatttacatagggcgtaagcggatgcaggtg
gaccactctgagaagtctgtgcccaacatccacaacctggtggaggcagactactcctat
tggaccctgggctacatgatgtcattgaacggcgccaagaaactattggctgtgaaaccc
ctgaccaagatgctgccagtggacgaatttctgcccgtcatgtacaacaaacatccagtg
aaggactacatgacccactttgagcggcgggacctgcgggcgttctctgccgagccgctg
ctggtgtacccgacgcactacacgggcgacccgggctacgtgagcgacacggagacgtcc
accgtctgggacaacgagggcctgcgcaccgactgggaccgcaagcgctcgcacaagacc
cgcgagcaggaggagctcagcatggaggcgcagaactccgacgtcctccagtcgccgctg
gagagcgccgcccgtgacgaactatag
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