Clupea harengus (Atlantic herring): 105892389
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Entry
105892389 CDS
T09045
Symbol
dennd4a
Name
(RefSeq) C-myc promoter-binding protein isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105892389 (dennd4a)
Membrane trafficking [BR:
char04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
105892389 (dennd4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
DUF2464
PPR
PPR_long
Motif
Other DBs
NCBI-GeneID:
105892389
NCBI-ProteinID:
XP_031420672
Ensembl:
ENSCHAG00000003270
UniProt:
A0A6P8F6M2
LinkDB
All DBs
Position
3:17848002..17902485
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AA seq
1884 aa
AA seq
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MMEDKGPRVADYFVVAGLTDSSKPLEEEVHFDDVCHRTAGQAKAPITDVAVVIRSQGEEV
PRGYTCVETTPTGLPAELNGGTLMGPQIFLCFRRGRDKPPLTDLGVLYEWKEKLKPGCHI
IQTTPSGRPANISSSSSQRIYITYRRAHEANSHASLAVKDICVIIPGKGETPPHAYCKLE
KNLNSSMWGSSVYLCYKKSMAKTNTLAFKAGLLSRFPEEDYEAFPLPESVPLFCLPMGAS
IECWPAHTKYSLPVFSTFVLTGNSGEKVYGAAIQFYEPHPEERLTEKQRTQLGLQGGGAR
AETSMAVHTSKSICLLSHWPFFDAFRSFLTFLYRYSISGPHSLPIEKHISNFMHKVPFPS
SQRPRILVQLSPHDSLMLSQPVSSPLPLSGGRLSTLLLNLGPKNAASLLVLAVTEHKILL
HSLRPAVLTSVAEALVSMIFPFHWPCPYIPLCPLTLADVLSAPCPFIVGVDSRYFDLYEP
PADVSCVDLDTNTISHKEDRRSLTWKILPRKACKHLINALSSLHQQLAEGDLVTREDGQI
EPAMSDRDPGSGGKSLQTLELEIQEAFLRFMAAILKGYRSYLLPITEAPSEKATDASSLF
DLQGFLKSRDRSHQKFYSLMTKTQMFIRFIEECSFVSDKDASLAFFDDCVDKLFGTEKGG
KVDSEKLEDARLIELDKSHRSEHTVFVTPPELPPVPEGEEPTARYSYAGFPALNVELCQS
QEGQHITMATSAARHASPTSPAAIFRRSKQEIKLAQKMAKTYSSVPQMWSRCLLRHCHGL
WFICLPSYVSGCHSKVRALRTAYDLLRTMQDKKLQPPDEVCYRVLMQLCGQYGQPVLAVR
VLFEMKKAGVQPNAITYGYYNRAVLESTWPSTTRGGYFLWGKLRNVVRGVVQFKQVWRRQ
ATVSRETHLSDASDLDSLSHGSVDSANDSVERASLDTDFAKMDSGDDRSSTGGQSDQGYD
SLSKEEVRLVGGEEQVCPRDVKEKEKQKEKEKHKEKHKEKEKERSTGPSVEQSEASRRPD
SISLLQHPAAIVPDVNTVADSGSRRPSTAAPPPPTAEPGRAAAPVTGPPVTGPLPKSSRP
NSLAIFGETRPQRPRSPTVTPTSEEAPGEKEEEEDGAAGSRGGGRAKAGVERSMSCGVAV
ETEVIVGGRGARRAGGGVLRSVSVGAGLSGTVKRSDIQAGFDPLSLLAAETHTHTHTHTQ
AQTPEDGEGEREGDTPDTPTAHSHLAEEIKLHMDNLSSPVSGRPHSVDQRGHRTPVPSPL
NSPRRSAASKPQTPQHPAPPLPPPPQSPLQPQPVLRSRLFSSPSLPQGGVRRQRERPTSL
ISPSSPSPTPSSFSMDSLFTPTLDVFKSSFLSAGKGVAEKASRLYSRLSSQTSLQLDANS
DQVSISSMGSGDPECSSLFDGDSCFDPDGFTSPKRDGALYLSRPRRSPRRSSQSQESPTA
PPRLFRQSSLYGSSAALSRPPHTPDSSPDNGHSAAHQGYAIEVLMSSCSRCNTCECLVYD
EEIMAGWTADDSNLNSTCPFCGSPFLPLLDVEIRDLRSQKRPPPQEVVSSCSNQTPASEG
QTESPASAPARAPASAHASAPASEGQTESPASAPASARSPAEEDPPKDPAATPRDPAEAE
APADAAADAPADAPADAPAVSAKTASEPVRVPYLSPLVLWKELESLLENEGDEALGSAAV
VDHHPIVFWNLVWFFRRLDLPSCLPPLILSSQHCRHDDQDSQSGSSEDSKNVLVQILWDN
PRLHQDPIQPCYRLWSKHCVSVSVCGPSPLWEEESSEQTVSLELLQSVVKSIKRNDVYQP
MSQVLQLLGDSLGFTRQRSLYRDLLFLSLVALGKNSVNIDAFDREYKMAYDRLTPGQVKL
THNCDRPPSAGVMECRRTFGLPSL
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacaagggccctcgtgtagccgactactttgtggtggccggcctaacggac
tcctctaagcccctggaggaggaggtccacttcgacgatgtctgccaccgcacggccggc
caggccaaggcccccatcaccgacgtggcggtggtcatccgctcgcagggggaggaggtg
ccgcgcgggtacacctgcgtggagaccacgccgacggggctgcccgccgagctcaacggg
ggcacactcatggggccccagatcttcctgtgcttccgcaggggccgggacaagcccccc
ctcacagacctgggagtcctctatgagtggaaggagaagctgaagccgggctgtcacatc
atccagaccacgccctctggtcgccccgccaacatcagtagctcctcctcccagcgcata
tacatcacctaccgccgggcccacgaggccaactctcacgcgtcattggctgtcaaagac
atctgtgtcatcattccaggcaaaggggagacgccccctcacgcctactgcaaactggag
aagaacctcaacagcagcatgtgggggtcgtctgtgtacctctgctacaagaagtccatg
gccaaaaccaacacactggcattcaaagcaggtctgctctcgcggttcccagaggaggac
tatgaggccttccccctgcctgagtccgtgcctctgttctgcctgcccatgggggcgtcc
atcgagtgctggcccgctcacaccaaatactccctgcctgtcttctccacgttcgttctg
accgggaactctggggagaaggtgtacggagcggccatccagttttatgagccacaccca
gaggagcgtctgacggagaagcagcgcacacagctgggcctgcagggagggggcgcgcgg
gcggagacctccatggccgtccacaccagcaagagcatctgcctgctgtctcactggccc
ttcttcgacgccttccggagctttctcaccttcctctaccgctactccatctccggcccc
cacagcctccccatagagaagcacatctccaacttcatgcacaaagtgcccttcccctcc
tcgcaaaggcctcgcatcctggtccagctgtctccacacgatagcctgatgctgagccag
ccagtgtcctcgccgctgcccttgagtggcggtcgtctgtccacgctgctgctgaacctg
ggccccaagaacgcggccagcctgctggtcctggccgtcaccgagcacaagatcctgctc
cactcgctgcggcccgccgtgctcaccagcgtggccgaggccctcgtgtcgatgatcttc
ccgttccactggccgtgcccgtacatcccgctgtgcccgctcaccctggcggacgtcctc
agcgccccctgccccttcatcgtgggcgtcgactcgcgctacttcgacctctatgaaccc
ccggccgacgtcagctgcgtggacctggacaccaacaccatttcccacaaagaggacagg
cgatcgctgacctggaagatcctgccaaggaaagcctgtaaacatctgatcaacgccctg
agcagcctccaccagcagctggccgaaggcgatctggtgacgcgcgaggacggccagatc
gagccggccatgagcgaccgtgaccccggcagcgggggcaagagcctgcagaccctggag
ctggagatccaggaggccttcctgcgcttcatggcggccatcttgaagggctaccgctcc
tatctgctgcccatcaccgaggctccctcggagaaagccactgacgccagctccctcttc
gacctgcaggggtttctgaagagccgcgatcgctcgcaccagaagttctactcgctgatg
accaagacccagatgttcatccgcttcatcgaggagtgctctttcgtcagcgacaaggac
gccagcttggccttcttcgacgactgcgtggacaagctcttcggaactgagaaaggaggc
aaggtggacagtgagaagctggaggacgctcggctcattgagttggataagtcccaccgc
agtgaacacacagtcttcgtcacccccccagaactgccccccgtgcccgagggagaggag
cccacagcacgctacagttacgccggcttccctgctcttaatgtcgagctctgccagtct
caggaggggcagcacatcaccatggcaacctcagcagccagacacgccagccccaccagc
cccgcggcaatcttccggcgctccaagcaggagatcaaactggcccagaagatggccaag
acgtactcgtccgtgccccagatgtggtccaggtgcctgctgcggcactgccacgggctg
tggttcatctgcctgccctcctacgtcagcggctgccactccaaggtgcgggcgctgcgc
accgcctacgacctcctccggaccatgcaggacaagaagctgcagccgccagacgaggtg
tgctaccgggtgctgatgcagctgtgtggtcagtatgggcagcctgtgctggccgtgcgc
gtcctctttgagatgaagaaggcgggggtgcagcccaacgccatcacctacggctactac
aacagggcggtccttgagagcacgtggccctccaccactagagggggctacttcctgtgg
gggaagctgaggaatgtggtgcggggcgtggtccagttcaaacaggtgtggcggaggcag
gccaccgtctccagggagacccacctctcagacgccagcgatctggacagcctgagtcac
gggagtgtggacagcgctaacgactcggttgagcgcgcctccctcgacaccgacttcgcc
aaaatggactccggcgatgacagatcaagcacaggaggacagtcagatcagggctacgat
tccttatccaaagaagaggtgcgtcttgtgggtggggaagagcaggtctgccctcgtgac
gtgaaggagaaggagaaacaaaaggagaaggagaaacacaaggagaaacacaaggagaag
gagaaggagagaagcactggaccctctgtggagcaaagtgaagcttctagaagaccagat
tccatctctctccttcaacatcctgctgctattgtaccggacgtcaacactgtggctgac
tccggttctaggcgcccgtccacggcagcaccgccaccgcccacggctgagcctggccgc
gccgcagccccggtcacaggaccgccggtcacaggaccgctgcccaagagcagcaggccc
aactccctggccatcttcggagagacacgcccgcaacgcccccgctcaccgaccgtcacc
cccacctctgaggaggccccgggggagaaggaggaggaggaagacggggcggctggaagc
agaggggggggcagagccaaagccggcgtggagcggagcatgagctgtggcgttgccgtg
gagacggaggtgattgtcgggggccgtggtgcgcggcgtgcgggcgggggggtgttgagg
agtgtgagcgtgggcgcggggctgagtggaacggtgaagcgcagcgacatccaggccggc
ttcgacccgctgtccctgctcgccgcagagacacacacacacacgcacacacacacgcag
gcgcagacgcctgaagacggggaaggagagagggagggggacacaccagacacccccaca
gcgcacagccacttggcagaggagatcaaactccacatggacaacctaagcagccctgtc
agtggccggccgcacagtgtggaccagaggggccaccgtactcctgttccctcccctctc
aactctcctagacgatcagccgcgtcgaagccccagacaccacagcaccccgcgccccca
ctcccccccccaccccagagccccctccagccccagcccgtgctacgcagccgcctcttc
tcctcgccctcgctcccccaggggggggtccgcaggcagagggagcgccccacctccctc
atatcgccctcctcgccctcccccaccccctcctccttctccatggactccctcttcaca
cccaccctcgacgtcttcaagagcagcttcctgtccgcgggcaagggcgtggccgagaag
gctagccgcctctactcacgcctctcctcccagacctccctgcagctggatgccaactca
gaccaggtcagcatctcgtccatgggctccggtgacccagagtgctcctcgctgttcgat
ggggactcgtgcttcgacccggacggtttcacgtcgcccaagcgagacggcgccctctac
ctgtcccgaccccggaggagcccgcggaggagcagtcagagccaggagagccccacagcg
ccccctaggctcttccgccagtcctccctctacggctcttcagccgccctctccagaccc
ccacacactcccgactcgtctcctgacaacggccactccgctgcccaccagggttacgcc
atcgaggtcctgatgtccagctgctcgcgctgtaacacctgtgagtgtctggtgtacgac
gaggagatcatggcggggtggacggcggacgactccaacctcaacagcacctgccccttc
tgtgggtctcccttcctgccgctcctagatgtggagatcagggacctgcgcagccagaag
aggcccccccctcaagaggtggtgtcatcctgcagtaaccagacccctgccagcgagggt
cagactgagagcccagccagcgcccctgcccgcgcccctgccagcgcccatgccagcgcc
cctgccagcgagggtcagactgagagcccagccagcgcccctgccagcgcccgcagcccc
gcagaagaggatccacctaaggacccggcagccacgcccagagacccggccgaggccgag
gcaccagccgacgcagcagccgacgcaccagctgacgcaccagccgacgcaccagccgtc
tcagccaaaacggcctcggagccggtgagggtgccctacctgagccccctggtgctgtgg
aaggagctggagtccctgctggagaacgagggcgacgaggcgctgggctccgccgccgtg
gttgaccaccaccccatcgtcttctggaacctggtctggttcttccgccgcctggacctg
cccagctgcctgcccccgctcatcctcagctcgcagcactgtcgccatgacgaccaggac
tctcagagtggttcttcagaggacagcaagaacgttctggtccagattctgtgggacaat
cccagactgcaccaggaccccatccagccctgctacaggctctggagcaaacactgtgtg
agtgtgagtgtgtgtggtccgtctccgctgtgggaggaggagagctcggagcagacggtc
agtctggagctgctgcagagcgtggtcaagagcatcaagaggaacgacgtctaccagccc
atgagccaggtcctccagctgctgggagacagcctgggcttcacccgacagaggagtctg
tacagagaccttctcttcctgtccctggtggccttgggcaagaacagtgttaacattgat
gcctttgaccgtgagtataagatggcgtatgaccgcctgaccccaggtcaggtgaagctg
acgcataactgtgaccgtccgcccagcgcaggggtgatggagtgccgccggacgtttggc
ctccccagcctgtga
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integrated database retrieval system
