Clupea harengus (Atlantic herring): 105892498 Help Entry 105892498         CDS       T09045                                  Symbol ighmbp2 Name (RefSeq) DNA-binding protein SMUBP-2   KO K19036   ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3] Organism char  Clupea harengus (Atlantic herring) Brite KEGG Orthology (KO) [BR:char00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:char03009]     105892498 (ighmbp2)    03012 Translation factors [BR:char03012]     105892498 (ighmbp2) Enzymes [BR:char01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      105892498 (ighmbp2)     5.6.2.5  RNA 5'-3' helicase      105892498 (ighmbp2) Ribosome biogenesis [BR:char03009]  Eukaryotic type   Other ribosome biogenesis factors    105892498 (ighmbp2) Translation factors [BR:char03012]  Eukaryotic type   Initiation factors    Initiation associated factors     105892498 (ighmbp2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 SMUBP-2_HCS1_1B R3H AAA_30 AAA_19 zf-AN1 Viral_helicase1 ResIII DEAD nSTAND3 AAA_16 Helicase_RecD SLFN-g3_helicase Flavi_DEAD AAA_22 UvrD-helicase PhoH IstB_IS21 DnaB_C AAA_25 ABC_tran AAA T2SSE HEM4 NPHP3_N AAA_18 ATPase UvrD_C_2 Zot MAP3K_TRAF_bd ATPase_2 Herpes_ori_bp Motif Other DBs NCBI-GeneID:  105892498 NCBI-ProteinID:  XP_031420648 Ensembl:  ENSCHAG00000020640 UniProt:  A0A6P8EWK9 LinkDB All DBs Position 3:complement(16599159..16609174) Genome browser AA seq 1014 aa AA seqDB search MEVEVFVSRTLELLQEEREAEIEETRLLQENVPLKHLQHKGVCLLKLQIGSQRTGLYGRL VVIFEPRKSIGVSVLPSNSFGPGDIVGLYDPEGCSQGSQLGTGVVTRVTQSSVAVAFDES QDGLNLDGDGLFNIMKVANDITYRRLTSALNSLNGYGSGPAAGLINVLFGTSQPTELSLQ GDVEFYNTGLDQSQREAVTFALKQRDLAVIHGPPGTGKTTTVVEVILQAVKQGNKVLCCA PSNVVVDNLVERLAQRKVKVLRLGHPARLLETIQQYSLDAILSRSDTTDIIADIRKDMDK ALSELKKTRDRGSRGGLKRELGELRKELRSREDTATKQILKGASVILATNTGASSGGPLK LLPADHFDVVVIDECAQALEASCWIPLLNARKCILAGDYKQLPPTIKSRTAASKGLSVSL MERVIEKYGAVVVRMLTVQYRMNSAIMQWASEKMYQGKLTAHASVEKHLLKDLPGVASVE ETGLPLLLIDTAGCGLNEMEDTDELSKGNEGEADIVALHVKALTDAGLKAKDIAVIAPYN LQVDLLRQRLSQRHPELEIKSVDGFQGREKEAVVLSLVRSNRKGDVGFLAEDRRINVAVT RARRQLTVVCDSLTVRNHDFLKSLVDYMNEHGEIRTAFEYLEDVVPQNYTRDPKEGSRQP PSAQQRSKGESGKGKEAKRESGKRPETGGKSKGRDPQGKTPESGPFRGSALPRGEDQNQD QAQTQKKQDQIRQQIQTFLQDPGQTELRFAPSLNSHDRLLVHQISEELGLKHESQGEGQN RHITVSRSSSGPQEPSTGGEQKAEPQPSRAETEAETTPGHQGAAPAGVDLKSLHLERMRR EQQKREERARLSQQQQRGGAAVCAAGGKSQPGKKGKGAAKGKSRTKAGPADIAAAATADS DFDTLIDAVVKAERVCGFVKCKASVIMLGQLCMHCNRQFCLSHHIPEVHGCGDRAKSHAR MRISREGVLYAGSGQKDKSMDPNKKAYLHRKLDTKLQDMATQRKTKAKEKDPQP NT seq 3045 nt NT seq  +upstreamnt  +downstreamnt atggaagtcgaggtcttcgtctccagaaccctggagctccttcaggaggagagggaagcg gaaattgaagaaacaaggcttcttcaggagaatgtccctctaaagcacctgcagcataaa ggtgtgtgtctgctgaaactgcagataggcagccagcgcacaggcctgtacggccgcctg gtcgttattttcgaacccagaaagagcatcggcgtttcagtgctgcctagcaacagcttt ggaccaggtgacatagtgggcctgtacgaccctgaggggtgcagccaggggtcccagttg ggtacaggagtggtgacacgagtgacccagtcgtccgtggccgtggcttttgacgagtct caggatggcctcaacctggacggcgacggcctcttcaacatcatgaaggtggccaacgat atcacctacaggagactaacaagtgccctgaattctctgaatggatacggcagtgggcca gccgctggcctaatcaatgtgctctttggcacctctcaacccacagagctttccctgcaa ggtgatgtagagttttataacactggactggaccagtctcagcgggaggccgtgaccttt gccctgaagcagagggatctggccgtcatacatggacccccggggacagggaagaccacc acggtggtggaagtgatcctgcaagccgtcaaacaaggaaacaaggtgctgtgctgtgct ccgtctaacgtggtggtggataacctggtggagcgtctagctcagcgtaaggtgaaggtg ctgaggctgggccaccccgcccgtctcctggagaccatccaacaatactctctggacgcc atcctctcccgcagcgacaccaccgacatcatcgcagacatccgcaaagacatggacaag gctttgagtgagctgaagaagacgagggacagagggagcagaggcgggctgaagagggag ctgggcgagctacgcaaggagctgaggagcagagaggacaccgccaccaaacagatcctc aagggggccagtgtcattctggccaccaacactggagcgtcttcaggcgggcctctgaag ctgctgccggcggatcactttgacgtggtggtaatcgacgagtgtgcgcaggcgctggag gccagctgctggatccccctcctcaacgcccgcaagtgcatcctggccggagactacaag cagctgccgcccaccatcaagtcacgcacggcggcctctaagggtctgtcggtgagcctg atggagagggtgatcgagaagtacggtgcggtcgtggtgcggatgctgacggtgcagtac cgtatgaacagcgccatcatgcagtgggcctcagagaagatgtaccagggcaagctgacc gcgcacgcctccgtggagaagcacctgttgaaggatcttcctggagtggccagtgttgag gagacaggcctgcccttgctgctcatagacacggccggctgtgggttgaatgagatggag gacacagacgagctgtccaagggaaacgaaggagaggcagacatcgtagctctgcatgtc aaagcactgacggacgctggcttgaaagcaaaggatatcgctgtaatcgctccttacaat cttcaggttgaccttctgaggcagaggctctcgcagaggcaccctgagctggagatcaag tcagtggacgggttccagggcagagagaaagaggctgtggtgttgtccctggtcagatcc aaccgaaagggtgacgttgggtttttggcggaggacagaagaatcaacgtggccgtgacc cgagctcgacgccagctcacggtggtgtgcgattctctgacggtccgaaaccacgacttc ctcaagtccctggtggactacatgaacgagcacggtgagatccggacggccttcgagtac ctggaggacgtggtgccgcagaactacacccgggaccccaaagaggggtccagacagccc ccatcagcccagcagaggagcaaaggagagtcagggaaggggaaggaagcgaagcgggag tcggggaagaggcctgaaactggggggaaatctaaaggaagggacccccagggtaagacc ccagagtctggaccctttaggggttctgccctgcccagaggagaggaccagaaccaagat caggcccagacgcagaagaagcaggaccagatcaggcagcagatccagacgttcctgcag gacccgggccagacggagctgcgtttcgctccgtccctgaactctcacgatcgtctgctg gtccaccagatatccgaggagctgggcctcaagcacgagagccagggcgagggacagaac cgccacatcaccgtctccagatcgtcctcgggaccacaggaaccctccacagggggagaa cagaaagcagaaccacagccgagccgcgcggagacagaggcagagactacacccggccac cagggggcagcacctgcgggtgtggacctgaagagtctgcacctggagcgcatgagaaga gagcagcagaagagggaggagagggccagactgagccaacagcagcagagggggggagct gcagtctgcgctgcaggagggaagagccagccaggcaagaaggggaagggagcagccaaa gggaagagtcgcactaaagcggggcccgcggacattgctgcggccgctactgcagacagt gactttgacacgctgatcgacgccgtcgtcaaggctgagcgtgtgtgtggcttcgtgaag tgcaaagccagcgtgatcatgcttggacagctgtgcatgcactgcaaccgccagttctgc ctcagtcaccacatccctgaggtccatggctgtggggaccgagccaagagccacgcccgc atgaggatcagcagagagggggtgctgtacgccggcagtggccagaaagacaagtccatg gaccccaataagaaagcgtatctgcataggaagctagacacaaagctccaagacatggcg actcagaggaaaactaaagccaaagagaaagatcctcaaccatga

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