Clupea harengus (Atlantic herring): 105892606
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Entry
105892606 CDS
T09045
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105892606 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105892606 (smarca5)
03036 Chromosome and associated proteins [BR:
char03036
]
105892606 (smarca5)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
105892606 (smarca5)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
105892606 (smarca5)
RSF complex
105892606 (smarca5)
WICH complex
105892606 (smarca5)
B-WICH complex
105892606 (smarca5)
NORC complex
105892606 (smarca5)
BRF complex
105892606 (smarca5)
NuRF complex (fruit fly)
105892606 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
Myb_DNA-binding
HDA2-3
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
105892606
NCBI-ProteinID:
XP_012674358
Ensembl:
ENSCHAG00000002317
UniProt:
A0A6P3VK49
LinkDB
All DBs
Position
22:20963590..20977991
Genome browser
AA seq
1034 aa
AA seq
DB search
MSDQETCVDKREEKPELLVGAVGEASDTGRDEAPEVGQESKEESSSSSPNEFPEKGLLLP
GYEEKVETDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRMKKDEKQNLLSA
GDNRHRRTETEEDEELLSESNKTTNVCTRFDDSPHYVKNGKLRDYQVRGLNWLISLYENG
INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAV
CLIGDREQRNAFIRDTLLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKS
KLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQ
KLVERLHTVLRPFLLRRIKADVEKSLLPKKEVKMYVGLSKMQREWYTKILMKDIDILNSA
GKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDSHLVVNSGKMVVLDKLLPKMKAQ
GSRVLIFSQMTRVLDILEDYCMWRNWGYCRLDGQTAHEERQISINAFNEPDSSKFIFMLS
TRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITENTVEERIV
ERAEMKLRLDSIVIQQGRLVDPLQNKLGKDEMLSIIRHGATHVFASKESDITDEDINEIL
ERGEKKTEELKEKMSKLGEGSLRTFTVDTENSVYNFEGEDYREKKKVITNWIEPPKRERK
ANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYK
VPRNPELPNAAQAQKEEQAKIDEAEALTEEELEEKENLLTQGFTIWNKRDFNQFIKANEK
WGRDDLENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKK
ALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRN
SPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPRTSSGQKRKAE
GTPDGRGRKKKLKM
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaccaggagacctgcgtggacaagcgggaagagaagcctgaacttctagttggg
gcagtgggtgaagcatcagatactggccgggatgaggcccccgaggtcggacaggagagt
aaagaggaatcatcctcttcttctccaaatgagtttccagagaaggggctgctgttgcct
ggatatgaggagaaagtggaaaccgatcggaccaaccgatttgagtacctcctgaaacag
acagaggtgtttgctcactttatccagccagcagcccagaaaacccccacctcccctctg
aagatgaagccggggcgtccccgcatgaagaaggatgagaagcaaaacctgctctcagct
ggagacaaccgtcaccggcggacagagacggaggaagacgaggagttgttgagtgaaagc
aacaaaaccaccaacgtgtgcacacgttttgatgactccccccactatgtaaaaaatggt
aagctcagggactatcaggttcgtgggttaaactggctcatttccctttatgagaatggc
atcaacgggatcctcgctgatgagatgggcctggggaagactcttcagaccatctcattg
ctgggttacatgaagcactaccgtaacatcccggggccacacatggttctggtgcccaag
tcgacgctgtacaactggatgaatgagtttaagcgctgggtgccctccctacgagctgtc
tgccttattggtgaccgggaacagaggaatgcgttcatccgtgacaccctgttgccaggg
gagtgggatgtgtgtgtgacctcctatgaaatgctcatcattgaacgtgcggtcttcaag
aagttcaactggaggtaccttgtcattgatgaggcccaccgcatcaagaacgaaaagtca
aagctgtcagaaatcgtacgcgagttcaagaccaccaaccgtttgctgctgactggaacc
ccgctccagaacaatcttcatgagctgtgggctctgctgaacttcctgctgcccgatgtc
ttcaactcctctgaggactttgattcctggtttgacacaaacaactgcctgggagaccag
aaacttgtggaacgtctgcacactgtcttgcgtcccttcctgctgcgtcgtatcaaagct
gatgtggagaaatctctgctgcccaagaaggaggtgaagatgtatgtggggctcagcaag
atgcagagagaatggtacacaaagatcttgatgaaggatattgacatcctcaactcggcg
ggtaagatggacaagatgcgtctgctgaacatcctgatgcagctgaggaagtgctgtaat
cacccttacctgttcgatggcgcggagcccgggcccccctacaccactgactcgcacctg
gtggtcaacagtggaaagatggtcgtgctggacaagctgctgcccaaaatgaaggcccaa
ggttcccgcgtactcatcttcagtcagatgaccagggtgctggacatcctggaagattat
tgcatgtggcgtaactggggttactgccgtctggacggacagaccgctcacgaagagaga
cagatctcaatcaatgccttcaacgagcccgacagctccaagttcatattcatgctgagc
accagggctggaggcctgggcattaacctggccacagcagatgtggtcatcatctacgac
tctgactggaacccccaggtcgacctgcaagccatggatcgtgctcacagaatcggtcag
aagaagcaggtgcgtgtgttccgcttcatcaccgagaatactgttgaggagcgcatcgtg
gagagagctgaaatgaagcttcgcttggactccattgtcatccagcaaggccggctggtg
gacccactccagaacaagctgggcaaagacgagatgctgtccatcatcaggcacggcgcc
acacatgtcttcgcctccaaggagagcgatatcactgacgaggacatcaacgagatcctg
gaaagaggcgagaagaagactgaggagctgaaggagaaaatgagcaaacttggtgaaggc
tcactgcgtaccttcactgtggacacagaaaacagtgtctacaactttgaaggggaggat
tacagagaaaagaaaaaggtcatcacaaactggattgagccacccaagcgagagcggaaa
gctaactatgctgtggacgcctacttcagggaggccctgcgtgtcagtgaacccaaagcc
cccaaggctcccagacctcccaagcagcccaacgttcaggacttccagttcttcccccca
cgactctttgagttgttggagaaagagattctctattacaggaaaaccatcggctacaag
gttccacggaacccagaactgccgaatgcggcccaggcgcaaaaggaggagcaggctaag
attgacgaggcggaggcactgactgaggaggagctggaggagaaggagaacctcctcaca
cagggatttaccatctggaacaagcgggactttaaccagttcatcaaggccaatgagaag
tggggtcgagacgaccttgagaacattgcccgtgaggtcgagggcaaaacaccagaggag
gtcatggaatattctgctgtgttctgggaacgatgcaatgaactgcaggacattgagaag
atcatggcccaaattgagaggggtgaggctaggattcagaggaggattagcattaagaaa
gcactggactcaaagatcggtcgatacaaggctccgttccatcagctgcggatctcctac
ggcaccaacaagggcaagaactacaccgaggaggaggaccgcttcctcatctgcatgctg
cacaagctgggcttcgacaaggagagcgtctatgatgagctacgccagtgcatccgcaac
tcaccacagttccgctttgactggttcctcaagtcccgcactgccatggaactgcagagg
aggtgtaacacactgatcacgctaattgagcgagagaacatggagctggaagagagggag
aaagcagagaagaagaagagaggtcctcgcacttcctcaggccagaaacgcaaggctgag
gggaccccagacggccgtggacgcaagaagaagctgaagatgtga
DBGET
integrated database retrieval system
