Clupea harengus (Atlantic herring): 105892635
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Entry
105892635 CDS
T09045
Symbol
garre1
Name
(RefSeq) granule associated Rac and RHOG effector protein 1
KO
K26671
granule associated Rac and RHOG effector protein 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105892635 (garre1)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105892635 (garre1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4745
EMC3_TMCO1
C2orf69
Motif
Other DBs
NCBI-GeneID:
105892635
NCBI-ProteinID:
XP_031424970
Ensembl:
ENSCHAG00000002288
UniProt:
A0A6P8FNH8
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All DBs
Position
6:13796155..13829716
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AA seq
1135 aa
AA seq
DB search
MYCCSAQETKMDYKRRFLLGGSKQKVQQHQQYQMPDLSRTLSAPLGSSCTAGPPPQLAPC
QPQPVPSTAVADIQQGISKYLDALNVFCRASAFLTELFSSVFRNSHYSKAATQLKDVQEH
VMEAASRLTAAIKPEIAKMLMELSAGAANFKDQNDFSLQDVEVLGRCFLTVMQVHFQFLS
QALQKVQPAAQSCLAEALSQAQERHANSACPQNSTSGHAPLSELDEACRSWRAACEATAR
LRERGRDGCLSGLQVQQLFCSHGSSLPEHQLKELNLKIDSALQAYKVSLDSLGHSEYALK
AGFHLNPKSAEAALQGCCSEAEAQQAGRMQTTSQPIQCELPTIPVQIGSHFLKGVSFNES
ATDNLKIKMHTVLQLIKEAVGQNGVSVRDESPVTDVLNQVCPSSWRGACKTAVQLLFGQA
GLVVVDTAQIENREAYAPQITLEGSKVVVQVPSTWCLKEDPATMSLLQRSLDPEKTLGLV
DVLYTAIYDLNRWKERKEQALPIIQIQLQRESPDYCSHVDLPSGNGSKASSGGGLPRTIS
KLTSKFTRKAASIPNTPSRSPDDKPPKAPGPDGRLHSLLQLGGISCPQDPTLGPLANGAC
PDDQGMNLPTDQEMQDVIDFLSGFNMGKSQQASPLVKRRNSVPSSGAAATDIKPLPAGSQ
HALQQALQPLQPQQQPQQQHQHQLSVPKPPQPQQPQQPQQPQPPQPPPPQQPPPPQPSQQ
ALQYYQHLLQPISQQQQQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
ASPQLPGQPLPQQRVPSKWLGGSSPQPPPQGPPGGLSPMGPLGQWGAPGLPDLSSDLYSL
GLVGSPYMDSMMSEMLGNKPQGPRNNTWPNREQSESAVFNVLGDTLPFDPAVGSDPEFAR
YVAGVNQAMQQKRQAQHIRRPGNARGNWPLADETHRTWPHPEYYSEGDAVNSSWSANQGD
SASSSDEASSANGDSLFSMFSGPDLVAAVKQRRKHSCGEQEVCTLPSPPLHHTTDDSCQD
SKTKTWPPKAPWQHSSSHTNTMPNLGSSLYQMNIPSSQWSDSMQMLQSAVWSTASDCSPS
GGISSGFPFSQQQQQQQPPPQPQQQPPQQHKQPISKGFKTFPHKPEHRPSYLHQY
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgtattgttgcagcgcgcaggagactaaaatggactacaaacggcgctttttgctgggc
gggtccaagcagaaagtgcagcagcaccagcagtaccagatgcctgacctgagccggacc
ctcagcgccccactgggctcctcctgcacggcgggccctcccccccaactggcgccgtgc
caaccgcaaccggtgcccagcacggcggtggccgacatccagcagggcatctccaagtac
ctggacgcgctgaacgtcttctgccgcgccagcgccttcctcaccgagctgttcagcagc
gtcttccgcaactcgcactactccaaggcggccacgcagctgaaggacgtgcaggagcac
gtgatggaggcagccagccggctgactgcggccatcaagcccgagatcgccaagatgctc
atggagctgagcgccggcgccgccaactttaaagaccagaacgacttcagcctgcaggac
gtggaggtgctgggcagatgcttcctgacggtgatgcaggtccacttccagttcttgtcg
caggcgttgcagaaggtgcagccggctgcgcagtcgtgcctggctgaggcgctgtcccag
gcgcaggagcgccacgccaacagcgcctgtccccagaactccacctccgggcacgccccc
ctcagcgagctggacgaagcctgccgctcatggagagcagcctgtgaggccaccgctcgt
ctgcgtgagcgcggcagggacggctgcctgtcggggctgcaggtacagcagctcttctgc
tcccacggctccagcctccccgagcaccagctcaaggagctcaacctcaagattgacagc
gcactacaggcatataaagtctcgctggacagccttggccacagtgagtatgccctgaag
gccggcttccacctgaaccccaaatcagctgaagcagctctgcagggttgctgcagtgag
gcggaggcccagcaggcgggccggatgcagaccacctcccagcccatccagtgtgagctg
cccaccatccccgtgcagatcggctcgcacttcctcaagggcgtctccttcaacgagtcc
gccactgacaacctcaagatcaaaatgcatacagtgctgcagctgattaaggaggcggtg
gggcagaatggtgtgagcgtgcgggacgagtcgcccgtgacggacgtgctgaaccaggtg
tgcccctccagctggagaggagcctgcaagaccgccgtgcagctgctgttcggccaggcc
ggcctggtggtggttgacacggctcagattgaaaacagagaggcctacgcaccccagatt
accctggagggctccaaagtggtggtgcaggtgccttcaacatggtgtctgaaagaggac
ccggccaccatgtccctgctgcagcgcagcctggacccagagaagacactgggcctggtg
gacgtgctctacaccgccatctacgacctcaaccgctggaaggagcgcaaggagcaggct
cttcccataatccagattcagctgcagcgcgagagccccgactactgttcccacgtcgac
ctgccgtctggcaacggctccaaggcgtccagtggcggtggcctccccaggaccatctcc
aagctgacctccaagttcacccgcaaggccgcctccatccctaacaccccgtcccgcagc
cctgatgacaagccccccaaagcccctggccccgacggccggctgcacagtctgctccag
ctggggggcatctcctgcccccaagaccccaccctgggccccctggccaatggggcgtgc
cctgacgaccagggcatgaacctacctaccgaccaggagatgcaggacgtcatcgacttc
ctctcagggttcaacatgggcaagtcccagcaggcctcgcctctggtcaagcgcaggaac
tccgtgccctcctctggcgccgctgccaccgacatcaagcccctgccggccggctcccag
catgcactgcagcaagccctccagcccctgcagccccaacagcagcctcagcagcagcac
cagcaccagctctctgtccccaaaccacctcagccgcaacaaccacaacagccgcagcag
ccgcaaccacctcagccaccaccaccacagcagcccccgcctccacagccttcccagcag
gccttgcagtattatcagcacctcctgcagccaatcagccagcagcagcagcaggcccag
cagcagcagcagcagcagcagcagcagcagcagcaacagcagcaacagcagcaacagcag
caacagcagcaacagcagcaacagcagcagcagcagcagcagcagcagcagcagcagcag
gcctctcctcagctcccaggccagcctctgcctcagcagagagtccccagcaagtggctt
gggggctccagcccacagcccccaccacagggccccccaggaggcctgtctccgatgggg
cccctgggacagtggggggccccggggctgcccgacctgagctcggacctctacagcctg
gggctggtggggagcccctacatggacagcatgatgtctgagatgctgggcaacaagccg
cagggcccgcgcaacaacacctggcccaaccgtgagcagagcgagtcggctgttttcaac
gtgctgggagacacgctgccctttgaccctgcagtgggctcggacccagaatttgcccgc
tacgtcgctggggtcaaccaggccatgcagcagaaacgccaggcgcagcacatccgccgc
ccaggcaacgcccgtggcaactggcccctagcggacgagacgcaccgcacctggccccac
ccagagtactacagtgagggggatgcggtgaacagcagctggtcggccaaccagggcgac
tcggccagctctagtgacgaggcctcctcggccaatggggacagcctgttctccatgttc
tctggccctgacctggtggctgcggttaagcagaggaggaaacacagctgtggggagcag
gaggtgtgcacgctgccctctcctcctttgcaccacactacagacgacagctgccaggac
agcaaaaccaaaacatggccccccaaggctccctggcagcactcctcgtcccataccaac
accatgcccaaccttggctcttccctctaccagatgaacatcccctccagccagtggagc
gactccatgcaaatgctgcagtcggccgtgtggtccacggccagcgactgctctccctcc
ggcgggatctcgtctggcttccccttctcccagcagcagcagcagcagcagcccccgccg
cagccacaacagcagcccccgcagcagcacaagcagcccatcagcaagggcttcaaaacc
ttcccccacaagcctgagcaccggccctcttatctgcaccagtactga
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