Clupea harengus (Atlantic herring): 105892636
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Entry
105892636 CDS
T09045
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105892636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105892636
03036 Chromosome and associated proteins [BR:
char03036
]
105892636
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105892636
Coactivators
SAGA/TFTC/STAGA complex
105892636
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
105892636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
105892636
NCBI-ProteinID:
XP_031424971
Ensembl:
ENSCHAG00000004344
UniProt:
A0A6P8FMX5
LinkDB
All DBs
Position
6:13843551..13923526
Genome browser
AA seq
1047 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLVGQSNPAAPHSENRSGGSTTNANHHLGR
TLPAQVGTPSEQQQQQGQHKAEMNPENNSKEISSDKTVISSSVSSIATFEEPSTTSGTVV
SASTSGLQSHGSSNITTLSASDGVTLPSPLVSINPASRGSAPTPIEASAGTPTLKTYSMS
TRRTAAAQSLNGDGGAVTSMKSPNAAASGSVSTAANNTMASNTSAANNTTSPLSPSNVST
TQPAIPLDRGTPTIALHRLPNHIVASIAQNGNGTTVSALVQQGARIGPVSAAATPQVNHS
KSGDATSAKTDLPVQAKNIIQSQPGTVNSVISTVPSPSVNTVISQQQTTNTVTLPAASSP
VTLTAVAKPTVNIVGQQPTTTTVGMIRPAAVSSAPAVATSTQPQLRPGLAAPQRIVGPQL
IVRPPQQQTTIQLPPGFTIPQGMVLVRTEMGQLVMVPQQALAQAQAQAQAQAQAQAQAQS
TISPRPATPTAGATFRVTTPQSPVTTQAIRPGPVVQTKKAPAVVAVTAPAPQQQIPPAVL
SPQPAPPSTTPATATAPTPAPGVSVISQEMQENVKKCKNFLATLIKLASHNSPSPETSRN
VKALVQDLLDAKIEPEEFTNRLQTELKSSPQPYLVPFLKKSLPALRLSLLSNQQTLTQPQ
VIAKPGAIASPVPCAGTTMPAVRARLPNSPLPAGAHSAALGIKRVCGPGAQVRMPMVITQ
AVRAPGVAGKGPVSQTGKSPQGFTAQLPGNQKNKLNDPGGGSFRDDDDINDVASMAGVNL
NEESARILATNSDLVGTHIRSCKDEAFLPTGLLHRRILDTAKRFGVTEVPLEAVNFIAHA
TQSRLRTVLEKVSAIAQHRMDTCKDEEWYEQSTDVRSQLKFFEQLERMEKQRKDEQEREI
LLKAAKSRSRQEDPEQARLKQKAKEMQQQELALIRQREANLTALAAIGPRKKRKVDSPGA
SSSSGTERSPLPWMPLAAGPLQASLIRLSRVFLRGEEVRVPLQPRGQILAFLSHRSLQIH
SERESESLPCMIYLRAVIPWALLSVVH
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtgcctccgaccctctggaagatatgctgttctccgaggtggacgagaaagca
gttagcgacctagtgggttctttggagtcgcagcttgtcggccaaagcaatcctgcagct
ccacattcggaaaacagaagtggtgggtcaacaactaatgcaaatcaccacttggggaga
acgctacctgcccaagtgggcactccatcagagcagcaacaacaacaagggcaacataaa
gctgagatgaatccggagaacaactcaaaagaaattagctcagataaaactgtaatatcg
tcttcagtgagctccattgcgaccttcgaggaaccctccaccacttcagggactgtggtg
agtgctagtactagcggtttgcaatcacatggatcatctaacatcacaacactgtctgca
tctgatggggtaactttgccatctccgctggtcagcatcaaccctgctagcagaggttcg
gctccgacgccaattgaagcatcagctggaacccctacacttaaaacatactctatgtca
acccgaaggactgcagccgcgcagagtctgaacggcgacgggggagccgtaacgtcaatg
aagtccccaaatgccgctgcctctggctctgtctcgacggcagctaataacaccatggct
agcaatacaagtgccgcgaacaacacgacttcaccgttgtctccctccaatgtttctaca
acacagcctgctatccctctggatcgcgggactccaactattgctctgcacagacttccg
aatcatatagtcgccagcatcgcgcaaaatggaaatggcacgactgtgtcggcgttggtc
cagcaaggcgcgcgaataggaccggtcagtgctgcagcaactccacaagttaaccatagc
aaaagcggtgatgctacttcagcgaagacggatttacccgtacaggcaaaaaacatcatt
cagagtcagcctggcactgtaaattctgtgataagtacggtgccatctccctctgtcaac
acggtgatcagccagcagcagaccaccaacactgtaacgttacctgcagctagcagtccc
gttactctcaccgccgttgcaaagcccactgtcaatatagttgggcaacaaccgacaacc
acaactgttggaatgatacggcctgcagcggtgtcctccgctccagccgtagcaacttct
actcagccacaacttcgcccaggactcgctgcgcctcagagaatcgtgggacctcagctg
attgtcagaccgcctcagcagcaaactaccatacagctaccaccagggttcaccatccct
caaggcatggttctggtgcggacggagatgggccagctggtgatggtgcctcagcaggct
ctggcgcaggcccaggcccaggcccaggcccaggcccaggctcaggctcaggcccagagt
accatctcaccgcgacctgctacccccactgctggggccaccttcagagtcaccacgccc
cagtctcccgtgaccactcaagccatccgtccaggccctgttgtccagaccaagaaggcc
ccggcggtggtggcggtgactgctccagctccgcagcagcagatacctccggcagtgctg
tccccccagcccgccccccccagcaccactccggccacggccaccgcccctacgcctgcc
cccggagtctccgtcatctcgcaggagatgcaggagaacgtgaagaagtgcaagaacttc
ctggccacgctcatcaaactggcatcccataattccccctccccggagacgtctcgcaac
gtgaaggcactggtccaggacctgctggatgccaagattgagccagaggagttcaccaat
cgattgcagacagaactcaagtcgtcacctcagccctacctggtccctttcctcaagaaa
agtctcccggcgctgcggctctcgttgctcagcaaccagcagactctgacccagccccag
gtcatcgccaaacctggcgccatcgccagcccggtcccttgtgctggcactacgatgcca
gctgtccgtgcgcgcctgcccaacagcccgctgcccgccggtgcccactcagctgcgctg
ggtatcaagcgtgtgtgtggtcctggggcccaggtgcgaatgcccatggtgatcactcag
gcagttcgagctccaggcgtggccgggaagggaccagtcagccagacggggaaaagtccc
cagggcttcaccgctcagctccctgggaaccagaaaaacaagctcaacgaccccggaggc
ggatctttcagggatgatgacgacatcaatgacgtggcctccatggccggcgtgaacctg
aacgaggagagcgcccgtatcctagcaacaaactcggacctggtgggcacacatatccgc
tcgtgtaaggacgaggccttcctgcccacgggcctgctgcacagacgcattttagacacg
gcgaagaggtttggggtgacggaagtgccccttgaagcggtcaacttcatcgcccacgca
acgcagtcgcgccttcgaaccgtgctggagaaggtgtctgccatcgcccagcaccgcatg
gacacctgcaaagacgaggagtggtacgagcagtcgacagacgtgcggtcgcagctgaag
ttctttgagcagctggagaggatggagaagcagaggaaggacgagcaggagagggagatc
ctgctcaaagcagccaagagtcgctcgaggcaagaggacccagagcaggctcggctgaag
cagaaagctaaggagatgcagcagcaggaacttgctctgatccggcagcgtgaggccaac
ctgaccgcgctggctgccatcgggccccgcaagaaacgcaaggtggactcgccgggggcg
tcgtcgtcgtcaggcaccgagaggtcccctctgccctggatgcccctcgcggctggccct
ctccaagcttcactgatccgtctgagccgagtgttcctgagaggggaggaagtccgtgtg
ccgctgcagccgcgggggcagatcctcgcgttcctttcccaccgctcgctgcaaattcac
tccgagagagagagcgagagtttaccgtgtatgatttatctaagagcagtcatcccatgg
gcgcttctttcagtggttcattaa
DBGET
integrated database retrieval system
