Clupea harengus (Atlantic herring): 105892787
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Entry
105892787 CDS
T09045
Symbol
supt6h
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105892787 (supt6h)
03036 Chromosome and associated proteins [BR:
char03036
]
105892787 (supt6h)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
105892787 (supt6h)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
105892787 (supt6h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
S1
S1_RRP5
HHH_3
HHH_9
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
105892787
NCBI-ProteinID:
XP_012674547
Ensembl:
ENSCHAG00000021554
UniProt:
A0A6P3VKU2
LinkDB
All DBs
Position
23:complement(17243070..17249210)
Genome browser
AA seq
1744 aa
AA seq
DB search
MSDFIESEAEESEEEFEEKDLKPRKTQKFTEDDEEEEEENPEDQDERGNLRGLINDDDED
DEEEPAGSRVGSGSDSGEEVRHRRRKRSYDDLLDEDDLDLIEENLGVKVKRRKKRFERLR
NMDDDEEDDEKDMIADEIFTGDGEVDGEVEDGETLDVHLAHAGEEEEEEDEESDIDDFIV
DDDGQPLRKKKGKKFSGYTDAALQEAQEIFGGDFDYSDFDAEPFDQGEEEEEDQEDESWD
RPKKQVKRKTGRRSIFDVYEPSELEKSHMTDQDNEIRSTDMPERFQLRVIPVKPAEDDEL
EEEAEWIFRNAFSNSTISMQDSTDYLNPGSNTTFSYKQPQTVSKIKEALNFMRNQHFEVP
FIAFYRKEYVEPELNINALWKVWHWDAKWTHLRTRKDNLTRLFNKMQSYQFEQISADPDK
PLADAVRPLDTADLTRLKDVQSFDELRDVYQHFQLYYGQDIPKMQNAAKTVKKKIKKIKK
ISADEDGEEEEEEVEEEEEEEQPQHKGPVLKMATRRDMYSICQKVGLDGLAKKFGLTPEQ
FGENLRDSYQRHETEQFPAEPLELAKDYICSQFSTPEAVLEAARYMVALQIAREPLVRHV
IRQTFQERAKVNIKPSKKGKKDIDEAHYAYAFKFLKNKPVKELTGEQFLKMGQAEEEGLL
TMDMNIDLMGVSGYGGDATYFEEIKQFYYRDEFSHQVQEWNKQRAMAIEQALKQFLYPQM
TKELRFKLVEEAKDHIVRSCCKKLCNWLKVAPYRPEQQMEEDDDLMDETQSKGIRVMGVA
YTDGRDTPVFCCLINGEGEVIDFLRLPHFLKRRNAWNEEEREKKLNDIESLKKFLLSKKP
HVVAVCAENRDSQMVMEDIKRTLTELEQDSSLPAVGVELVNNDLATLYMNSLKSEADFRD
YPPLLRQAVSVARQIQDPLVEFAQICSSDEDILCLKLHPLQEQVDKDELLTALYREFINR
VNEVGVDVNRAIAHPYTQSLVQYICGLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGP
KVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANP
AGALEEILDNPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRAQYRSPN
SEQVFNMLTKETPESFYIGKLITCVVTGIAHRRPQGESYDQAIRNDETGLWQCPFCRQDN
FPELSEVWNHFDSGSCPGQAIGVRNRLDNGVMGFIPTKFLSDKVVKHPEERVKVGMTVHC
RIMKIDIEKFSVDLTCRTSDLMDKNNEWKLHKDVYYDFDAESDEVKRDEELKKKNQRTTY
IRRVIAHPSFHNINFKQAEKMMETMDQGDMVFRPSSKGESHLTLTWKVGDGIFQHVDVRE
EGKENAFSLGHKLWINNEEYEDLDEITARFVQPLAAFARELLYHKYFQETEGGNRKKMEE
LLVKSKREKPTFIPYYISACRDLPGKFLLGYQPRGKPRIEYVSITPDGFRYRSRVFPTVN
GLFRWFKDHYHEPVPGVTPSSGSRTQTPASVNATPANINIADLTRAVSALPPNMTSQMFN
AIAAVKAQGQNPNTTPAQWGSSQYAYSGGGSSSGGGGGSSSAYHVFATPQQPITTPNYPM
TSPSYMGGFITPEIQSVPTPRYPGTTPQSSYGDHSSSKSSSSHSRSAQQQQQQQQQQQQA
AAKQSNTAVDWAKMAEQWRQEKEAEQRKQKTPRMTPRPSPSPMIESTPMSIAGDATPLLD
ETDQ
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcatagagagtgaggctgaagagtctgaggaagagtttgaggagaaagac
ttgaaacccagaaagactcagaaattcacagaggatgatgaggaggaagaagaagagaat
ccagaggatcaggatgagcgtggaaacttgcgcggtctcatcaacgacgacgatgaggat
gatgaagaggaacctgcaggtagtagagtaggcagtggtagcgattcaggtgaagaggtc
cgtcatcgccgtaggaaacgtagctatgatgatctcttggatgaagatgacctcgatctc
attgaagagaacttgggtgtcaaagttaaaagacgaaaaaaaagatttgaacgtctgcga
aacatggacgatgacgaagaggatgatgagaaggatatgatagctgatgaaatcttcact
ggtgatggagaggtagatggggaggttgaagacggagagacattggatgtgcatttggcc
catgcgggtgaggaggaggaggaggaagatgaagaatctgacattgatgacttcattgtg
gatgatgatggccagccactgaggaagaaaaaaggcaagaaattctctggctatacagat
gcagcccttcaggaagcccaggagatctttggtggcgattttgactactctgactttgac
gctgagccctttgaccagggagaggaggaggaggaggatcaagaagatgagtcttgggac
aggcccaaaaagcaggtgaagaggaaaacgggtcgccgcagcatctttgacgtctacgag
cccagtgagttggagaagagccacatgactgaccaggacaatgaaatccgaagcacagac
atgccagagagattccagctgcgtgtcataccagtgaagccagctgaggatgatgagctg
gaggaggaggcagagtggatcttcagaaatgccttttccaactccaccatctcaatgcag
gacagcacagactatctaaaccctggctcaaacaccactttcagttacaaacagccccag
accgtcagcaagatcaaagaggctcttaacttcatgaggaaccagcactttgaggtacct
tttattgcattctacagaaaagagtatgttgagccagagctaaatattaatgcattgtgg
aaagtctggcactgggatgcaaagtggactcacctgagaacacgtaaggataacctaacc
cgcctcttcaataagatgcagtcatatcagtttgagcaaatttctgctgatcctgataag
ccactggcagatgctgtccggccactggacactgcagacctgaccagactgaaagacgtt
cagtcctttgatgaactccgagatgtttaccaacacttccaactgtattatgggcaggac
atccctaagatgcagaatgcagccaaaactgttaagaaaaaaataaaaaagattaagaaa
atctctgcagatgaggatggtgaggaggaggaagaggaggtggaggaggaggaggaggag
gagcagccgcagcacaagggccctgtgctaaagatggccacccgccgagacatgtacagt
atctgtcaaaaagtaggtcttgatggccttgccaagaagtttggtttgacacctgagcag
tttggtgagaacttgcgcgacagctaccagcggcacgaaacagaacagtttccagctgag
ccccttgagttagcgaaagactacatctgcagccagttcagcactcctgaggcagtgctg
gaagccgcacgctacatggtggccctgcagatcgcccgtgaacctttggtcaggcatgtg
atcaggcagactttccaggagagggcaaaggtcaatatcaagcctagcaaaaagggcaaa
aaggacatagatgaggcacactatgcctacgctttcaagttcctaaaaaacaagccagtg
aaagagctgactggagagcagttcctaaaaatgggccaagctgaggaggagggcctgctt
acaatggacatgaacatcgacttaatgggcgtcagtggctacggtggcgatgcaacctac
ttcgaggagatcaagcagttctactacagagatgagttcagccaccaggtgcaggagtgg
aataagcagcgagccatggccatcgaacaggctctgaagcagttcctgtacccgcagatg
accaaagagttgaggttcaagctcgtcgaagaggcaaaggaccacattgtcaggtcatgc
tgcaagaagctctgcaactggctgaaagtggcgccctatcggcctgagcagcagatggag
gaggatgatgacctgatggacgagacgcagagcaagggcatccgtgtgatgggggtggcc
tacacagacggcagggacacgccagtgttttgctgtctaatcaacggagaaggagaagtc
atcgacttcctgcgcctcccccacttcctgaaaaggaggaacgcgtggaatgaggaggaa
agagagaaaaagctgaatgacatcgagagcctcaagaagtttctcctcagcaagaagcct
catgttgtggctgtctgtgcggaaaaccgtgattcccaaatggtgatggaagacatcaag
cgcacgctgactgaactagaacaggattcctctctgcctgccgtaggggtggagctagtc
aacaatgatctggcaacgctttacatgaacagcttaaaatcagaggcagacttccgtgac
tacccgccacttttgcgacaggccgtatccgtggccaggcagattcaggaccccctggtg
gagttcgcccagatttgcagtagtgatgaggacatcctctgtctcaagctccaccccctt
caggagcaggtcgacaaggacgagctcctaactgctctctaccgtgagtttatcaacaga
gtgaatgaggtgggggtggatgtcaaccgcgccattgctcacccatacacgcaaagcctg
gtgcagtacatctgtggcctgggcccaagaaaaggctcccacctgctcaagatcctgaag
cagaacaacacgcgtctggaaaaccgcacccagctggtcaccatgtgccacatgggcccc
aaagtcttcatcaactgcgccggcttcatcaagatcgacaccgcctcgctgggcgacagc
acagactcctacatcgaggtgctggatggctcgcgcgttcaccccgagacctatgagtgg
gcgcgcaagatggcggtggacgccctggagtatgatgagtcggcagaggacgccaacccg
gctggggcgctggaggagatcctggacaacccggagaggctgaaagacctggacctggac
gcctttgcagaggagttggaacgacaaggctacggcaacaagggcatcaccctctacgac
atccgcgccgagctcagttgcaggtacaaggacctgagagcgcagtacaggtcgcccaac
tccgagcaggtgttcaacatgctgaccaaagagacgccggagagcttctacataggcaag
ctgatcacttgcgtggtcacaggcatcgctcaccggcgcccgcagggtgagagttacgac
caggccatccgcaacgacgagacggggctgtggcagtgcccgttctgtcgccaggacaac
ttccccgagctcagtgaggtgtggaatcacttcgacagcggctcctgccccggccaggcc
atcggcgtgcgtaatcgtctggacaacggcgtcatggggttcatccctactaagttccta
agtgacaaggtcgtcaagcacccggaggagagggtcaaggtcggcatgaccgtgcactgc
cggatcatgaagattgacattgagaagttcagcgtcgacctcacctgccgaacgtctgac
ctgatggacaagaacaacgagtggaaactgcacaaggacgtctactatgactttgacgct
gagtcagatgaggtgaagcgggatgaggagctgaagaagaagaaccagaggaccacctac
atcaggcgagtgatcgctcacccgtccttccacaacatcaacttcaaacaggccgagaag
atgatggagaccatggaccagggcgacatggtgttccggccaagcagcaaaggcgagagc
cacctcacgctcacgtggaaggtgggagacgggatcttccagcacgtggacgtgcgcgaa
gagggcaaagagaacgctttcagcctggggcataaactgtggattaacaacgaggagtat
gaagatttagatgagatcacagccaggtttgtgcagcccttggcggcgtttgcgcgcgag
ctcctttaccacaagtactttcaggagactgagggaggcaacaggaagaagatggaggag
ctgctggtcaagtcaaagagggagaagcccactttcatcccctactacatctcagcctgc
agagacctgcctgggaagttcctgctcggctaccagcccagggggaagccgaggattgag
tacgtctccatcaccccggacggcttccgctaccgctcgcgagtgttccccaccgtcaac
gggctgttccgctggttcaaggaccactaccacgagcccgtgcccggtgtgacccccagc
agtggcagccgaacgcagacacccgcctcggtcaacgccacccccgccaacatcaacatc
gccgacctgacgcgagcggtgagtgccctcccgccaaacatgacctcccagatgttcaac
gccatcgcggctgtgaaggcccagggtcagaaccccaacactaccccggcccagtggggc
tccagccagtatgcctacagtggcggaggcagcagctcgggcggtggcgggggcagcagc
agcgcctaccacgtctttgccacgccgcagcagcccataacaacccccaactacccgatg
acgtcgcccagctacatggggggcttcatcaccccggagatccagtcggtgcccacgccg
aggtacccaggcaccacgccacagtcttcctacggcgaccattcctcgtccaagtcgtcc
tcgtcccacagcaggtcggcgcagcagcagcagcaacagcagcagcagcagcagcaggcg
gcggccaagcagagcaacacggcggtggactgggccaagatggccgagcagtggcggcag
gagaaggaggccgagcaacgcaagcagaagacgccgcgcatgacgccgcgcccttcaccc
agtcccatgatcgaaagcactcccatgtccatcgccggcgacgcaacgcccctgctggac
gaaacagaccagtag
DBGET
integrated database retrieval system
