Clupea harengus (Atlantic herring): 105892880
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Entry
105892880 CDS
T09045
Symbol
cdhr5a
Name
(RefSeq) cadherin-related family member 5 isoform X1
KO
K16505
cadherin-related family member 5
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
char04515
]
105892880 (cdhr5a)
Cell adhesion molecules [BR:
char04515
]
Cadherins
Cadherin related
105892880 (cdhr5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
105892880
NCBI-ProteinID:
XP_031425120
Ensembl:
ENSCHAG00000019130
UniProt:
A0A6P8FNV9
LinkDB
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Position
6:complement(19078522..19084259)
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AA seq
751 aa
AA seq
DB search
MKSQTLRLESTPTHEGTQSVLYVEKYQLVPRSPSPPYFICVDQIIGDMEQHKYYSKSLNG
ILCCLLTICLHKLTQSQKLCTVPPEPVSVRENSTVDTFIATVNTTESDITLTLMENPAEA
FELRGTDLMAKKGLDFEALLNEDALTVRIKCNKTGFKAVTLPLIVQIENINDNPPTFAKD
EYVLEIDELMPINSSIGLIEASDLDSDLLYYTLDPSTSKYFRLQTENYPKLLVQKIVEYD
VIQKMTLILYVQDTPIPTEPDVPSFTATTTITVNVRDIDNRPPWFQPCTKATVGIAKICY
SSGYKGRVNLTEKQEGPLQLQPGPIYAKDGDKNRNEQISYKILKGNEDSVFQMDENTGNV
TMLKAADIAGPIILTVMASQVTNRDQFAITSVTIEVMKKSRNPPRFEKERYEAYVYTTSG
PDNMVMRDKTSNRPFRVRARDEDFATGVNPDIRYEVQYSSYVNVTTDGFVLLKKAVKTDS
FALQLRAVCISTGESGTAALSVQVIPVPGVQSPSEGYRAGDMALLGFVMAALLVMCLIVI
GFLISRLRKGTANALKLSECLGPCLKLTHPRRRPRDSMQFTNDGFLNEGGDPSRGLPPRR
NLGPDRRPDSIKTARARVIRERQKPCTSCGHRVQANHVPNSSPAAQAKARPGPGQVRSIL
TKEKKRDERLRSVWFKETADTSEIQVEIIPENIGLKPAEDVEDLDAISTTSAPLESEMEL
GDLTAMITQDLGPGASVSDNKEDVTEDKPDL
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcacaaacattgcgactggaatcaactcccactcatgagggaacacagtcagtg
ctttatgtggagaagtaccagctggtaccacggtctcccagtcctccatacttcatttgt
gtggatcagattattggggacatggaacagcataaatattacagcaaatcactaaatggc
atcctctgctgcctcctgacaatctgccttcacaaacttactcagtcgcaaaagctgtgc
acggtccccccagagcctgtaagcgtcagggagaatagcacagttgacactttcatcgcc
acggtgaacaccacagagagcgacatcacgctaacgctaatggagaatccagcggaggct
ttcgagctgagagggacggacctgatggccaagaaaggattagattttgaggctctgctc
aatgaggatgcacttacagtcaggattaaatgcaacaaaactggcttcaaagcagttacc
ctacctcttatagtacaaatagaaaacatcaatgataatcctccaacctttgccaaggat
gaatatgttttagaaattgatgaattgatgccaataaattccagtattggacttatagaa
gcctcagatcttgattcagatctactctactacactttggatccatccacgagcaagtat
ttcaggctacagacagagaactatcccaaactcttggtgcaaaagatagtggaatatgac
gtcatacagaagatgactctgatcttatatgtccaggacacgcccattccgacagaacct
gatgtaccctcttttacggccacaaccaccatcacagtcaatgtgcgcgacattgataac
cgtccaccatggttccagccatgcacaaaggcaacagtcggcatcgcaaaaatctgttac
agttcagggtacaagggcagagtcaacttaactgaaaaacaagaaggtccgttacagttg
caaccaggaccaatatatgcaaaagacggagataaaaacagaaacgagcagatcagttac
aaaatccttaaaggaaatgaggacagcgtatttcaaatggacgagaacactggaaacgta
acaatgctgaaggctgctgacatcgctggccccattatcttgacagttatggcctcacag
gtgaccaacagagatcaatttgccatcacctccgtcaccatagaggttatgaagaagagc
agaaatcctccaaggtttgagaaagagcgctatgaagcctatgtctacaccacctcaggc
ccagacaacatggtgatgagggacaagacatccaacagaccctttagggttagagcacgc
gatgaggattttgcaactggtgtgaatcctgacattcggtatgaggtccagtacagcagc
tatgtcaatgtgaccactgacggttttgttctcttgaagaaagccgtgaaaacagactct
tttgctctgcagctccgtgctgtgtgcatctctactggagagtcaggcactgctgctcta
tctgtacaagtcataccagtgccaggtgtccagtcgccttctgaaggctacagggcggga
gacatggctttgttgggcttcgtcatggccgcccttctggtgatgtgccttatcgtcatc
ggattcctcatttcgcgcctgaggaaagggactgccaatgcgctcaagttatcagagtgc
ttaggtccatgcctgaagctcacccatcccaggagaaggccaagagacagcatgcagttc
accaatgacggctttttgaatgaagggggtgaccctagtagagggctgccccctaggcga
aacctgggtccagaccgcagaccggactcgataaagactgccagggccagggtgatccga
gagcggcaaaaaccatgcacctcctgtggccatcgcgtccaggccaaccacgtccccaac
agcagtcctgccgcccaggccaaagcccggccaggaccggggcaggtaagatccatcctc
accaaagagaagaagagagacgagcggctcaggagcgtatggttcaaagagaccgctgac
acctctgagatccaggtggagatcatcccggaaaacataggcctcaagcctgcagaggac
gtggaggacctggatgcgatttcgactacctctgcacctctggagagcgaaatggagctg
ggagacctcaccgctatgattacacaagatcttggcccaggggcctctgtttctgacaac
aaagaggacgtgactgaagacaaaccagacctgtag
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