Clupea harengus (Atlantic herring): 105892915
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Entry
105892915 CDS
T09045
Symbol
pabpn1l
Name
(RefSeq) embryonic polyadenylate-binding protein 2
KO
K14396
polyadenylate-binding protein 2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105892915 (pabpn1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105892915 (pabpn1l)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105892915 (pabpn1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
WD40_alt
RBD_DEAH11
Motif
Other DBs
NCBI-GeneID:
105892915
NCBI-ProteinID:
XP_012674686
UniProt:
A0A6P3VKF7
LinkDB
All DBs
Position
6:19618268..19621189
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AA seq
194 aa
AA seq
DB search
MADTRVRLETEIFANQWTSNPELEAIKARVLELEEEAEKLREVQTLAERQLMYNPLAALF
YHMSHEERIDADNRSVYVGNVDYGATAAELKTYFSGCGSVNRVTILCDRTTGHPKGFAYI
EFSERDAVGTAMTLDNTLFRGRVIKVSPKRTNIPGITNRGGNRGRPWARGNRFNNGFQGR
FRGNGRVQPWSDHY
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggctgatacacgtgttcgtctagaaacggagatctttgcaaaccaatggacctcaaat
cctgagcttgaagctatcaaggcaagagtgctggagttggaggaggaggctgaaaagctt
agggaagttcagactttggcagaacggcagctcatgtacaatcccctagcagcactgttt
taccacatgagccacgaggagagaattgatgctgacaatagatcagtgtatgttggaaat
gtggactatggcgcaactgcagctgagctgaagacctacttcagtggttgtggttctgtt
aatagagtgaccattctatgtgacagaaccactggtcaccccaaaggctttgcatatatt
gaattctcagagagggatgctgtggggactgcaatgaccttggataatactttattcaga
ggtcgagtcataaaggtttcgcccaaaaggaccaacataccaggcatcaccaacagaggg
ggcaatcgtggtcgaccatgggcacgtggcaacaggttcaacaacgggtttcagggtcgc
ttcaggggaaatggaagagtccagccttggtctgaccattattaa
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