Clupea harengus (Atlantic herring): 105892952
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Entry
105892952 CDS
T09045
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105892952 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105892952 (trim54)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
105892952 (trim54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_2
zf-C3HC4
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-RING_6
zf-C3HC4_3
Sina_RING
Prok-RING_4
CYP38_PsbQ-like
Zn_ribbon_FGT1_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
105892952
NCBI-ProteinID:
XP_012674733
Ensembl:
ENSCHAG00000007173
UniProt:
A0A6P3VM18
LinkDB
All DBs
Position
15:9822441..9837267
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AA seq
359 aa
AA seq
DB search
MNFALGFKPPVGETSTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDVFQASNP
LWQSRSSSAISTGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHPQP
EQQQQLMCEEHKEERINIYCLSCEAPTCSMCKVFGAHKDCEVAPLHNVYKRQKTELSDGI
AILVAGNDRMQAIISQMEDICRTIEENGRRQKQALCDKFDALYTILEERKKELVESVSRE
QDRKLRHVRGLIRCHGDHLEAAVKLVEAAIQSMEEPQMAVFLQSAKDVFKKITDTAKASD
LERAEPGYESMAQFAVDTDNVADMMRSIDFQTGSQNEDDDDLEEDGDGLPGVDAEPGRH
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgcgttgggcttcaagccgcccgtgggggagacgagcaccatggacaacctg
gagaagcagctcatctgccccatttgccttgagatgttcaccaagcccgtggtcatcctg
ccctgccagcacaacctgtgcaggaagtgcgccagtgacgtcttccaggcctccaacccg
ctgtggcagagccgtagttcctcagccatctctaccggggggcgcttccgctgcccgtcc
tgccggcacgaggtggtgctggaccgccacggtgtctacggcttgcagaggaacctgctg
gtggagaacatcatcgacatctacaagcaggagtccagcaggcccctgcaccctcagcca
gagcagcagcagcagctgatgtgtgaggagcacaaggaggagcggatcaacatctactgc
ctgagctgcgaggcgcccacctgctccatgtgcaaggtgtttggcgcgcacaaggactgt
gaggtggcgccgctgcataatgtctacaagcggcagaagacagagctcagcgatggcata
gcgatcctggtggcgggaaatgacaggatgcaggcgatcatctcacagatggaggacatc
tgcagaaccatcgaggagaatgggcggcggcagaagcaggcactgtgcgacaagtttgac
gcgctctacaccatcctggaggagcgcaagaaggagctggtggagagcgtgagccgggaa
caggaccgcaagctgcgccacgtgcgcggcctcatccgttgccacggcgaccacctggag
gccgctgtcaagctggttgaggcggccatccagtccatggaggagccgcagatggctgtg
ttcctacagagtgccaaggacgtgtttaagaagatcaccgacacggcgaaggcatccgac
ctggagcgggctgagcccggctatgagagcatggcccagtttgccgttgacacggacaac
gttgccgacatgatgaggagcattgactttcagacaggctctcaaaatgaggatgatgat
gatctggaggaagatggcgatggccttcctggtgtggatgcagaacctggcagacattag
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