Clupea harengus (Atlantic herring): 105892997
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Entry
105892997 CDS
T09045
Symbol
si:ch73-233f7.1
Name
(RefSeq) protocadherin beta-15
KO
K16499
protocadherin delta 2
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
char04515
]
105892997 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
char04515
]
Cadherins
Protocadherins
105892997 (si:ch73-233f7.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
105892997
NCBI-ProteinID:
XP_031413905
Ensembl:
ENSCHAG00000001961
UniProt:
A0A6P8EP63
LinkDB
All DBs
Position
20:complement(11855886..11862551)
Genome browser
AA seq
1021 aa
AA seq
DB search
MDQGSSRTQWPLVRHALCLLLCTGAMDLVLAQMRYSIPEELEHGAFVGNIAEDLGLDVAK
LSARRFRIVSGAKKQYLEVNLENGILFVNEKIDREELCEQSQTCFLHLQVVIENPLELYR
VEVEILDVNDNAPSFPWSEFNLEITESAAPGSRFPLESAQDLDVGTNSLRSYQLSANEHF
ALDIQTRNDGSKFAELVLETPLDREQKKAHEMVLTAVDGGSPERSGTAKITVTVLDANDN
VPVFDRSVYRVSLIENAPRGTLVLKLNATDLDEGPNGEISYSFSGHAPLKVRELFNVDSY
TGEIRVKGIVDYEKASVYELYVQAKDKGPSAVAVHCKVLVDILDINDNAPEVILTSVSTP
VQEDAPPGTVIAVISVMDRDSGENGNVDCEIPGNVPFQLHSSFKNYYTLVTSEFLDRENV
AEYNITLTAKDLGSPPLSTKKNILVTVSDINDNPPRFVQPSYTVYVTENNAPGASICSVT
AFDPDSNQNSYLSYSILEGQIQGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQIKVQAQ
DAGFPPLRSNVTVNVFVLDQNDNAPVIISPLPKNGTVATELVPRSVDAGYLVAKITAMDA
DAGQNSRLSYQVLQATDPGLFSVALYTGEIRTIRRFVEKDATRQRLVILVKDNGQPPLSA
TVSIILSVVDNVPESLSDFGDLTLNPQPSSNLALYLIVSLSTISLIFLIAIIVLASVKCY
KDRDALNGFGLSTVGAACCGIEPEPPTEVFKKSNLNLQISTGTKVPTNCMEVNSTNTLSQ
AYCYKVCLTPESAKSDFMFLKPCSPETPRNNANPKGTETLGWNAQSRNNGATTPSELKQP
NTDWPLTKNQTSSLKSYNSINMDGTLMRKAMQTDPENFVSPMAGQYWTWGNHMRGPKVDH
CSATLRPPSTEYRTSPPIAGPPPRAWTPRYVPPQHQTLQQAQTSPHPTPTPHPSHPPPDY
QHNVYIPGTPSALCTLRPSHRSSELDVHNAFSTFGKKRRFHYEQRDETPTPEIINNDLYN
N
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggaccagggatcctcgaggacacaatggccattagtgagacacgctctgtgcctgctt
ttgtgcacgggcgcaatggatttggtattggcgcagatgcgctactcaattccagaggag
ctggagcacggagcattcgtcgggaatattgcagaggacttaggcttggacgtggcgaaa
ctgtctgcacgtcggtttcggattgtatccggcgccaagaaacagtacttagaggtgaat
ttagaaaacggtattttgtttgtaaatgaaaagatcgaccgcgaagaactgtgtgaacaa
agtcaaacttgttttttgcacttgcaagtcgtcatcgagaacccactggagctctaccgt
gtagaggtggaaattctggatgtgaacgataacgctcctagtttcccgtggagcgagttt
aatcttgagatcaccgagtcggcggcgccaggctctcgctttccactggaaagtgcgcaa
gatttagacgtgggcaccaactctctccgctcatatcaactcagcgcgaacgagcacttt
gccttggatattcagacgcgcaatgatggcagtaagttcgctgagctcgttctagagacg
ccgctagaccgggagcaaaagaaggcgcatgaaatggtgctgactgccgtcgatggaggc
tcacctgagcgctcgggaacagcgaaaatcacagtcacggtgctggatgcaaatgacaat
gtccccgtgttcgatcggtctgtttatcgagtcagcctgattgaaaatgctccgagaggc
acacttgtgctcaaacttaatgccacagatctcgacgagggtcccaatggcgagatttcc
tactctttcagcggacacgcgccgttaaaagtgcgcgaattgtttaacgtggactcctac
acaggagaaattcgggtaaaagggattgtggattatgaaaaggcgagcgtgtatgaattg
tacgtgcaagccaaagacaagggtccctctgccgtagctgtgcactgcaaagtgctggta
gatattttggacataaacgacaacgcacccgaggtcattctgacctccgtgtctacacct
gttcaggaagacgcgccaccggggactgtgatcgccgttatcagcgtgatggaccgagac
tcgggcgagaacggaaatgtggactgcgaaattccaggaaacgttccatttcagctccat
tcatcgtttaagaattactacactttggtgactagtgagtttcttgaccgagagaacgtg
gctgagtacaatatcacgctgaccgcgaaagacttgggctccccgccactttccaccaaa
aaaaacatcctcgttacagtgtctgacattaatgacaacccgccgcgctttgttcagccg
tcctacactgtctatgtaaccgagaacaatgcccctggcgcttccatttgctcggtgacc
gccttcgatcccgactccaatcagaactcctatctgtcttattccattctggagggtcag
atacagggcatgccagtgtccacttacgtctccattaactccgacaatggaaacatctac
gcgctgcgctccttcgactacgaacagctccgaaactttcagatcaaagttcaagctcag
gacgctggcttcccgccactgcgaagcaacgtaacggtgaatgtattcgttttagatcaa
aatgataacgcaccggtcattatatctccattgcctaaaaacggcacggtggcgacagaa
ttggtccccaggtcagtggacgctggttatcttgttgcgaaaatcacggcaatggacgcg
gacgctgggcagaactcgcggttgtcttaccaagtgctccaggcgacagatccagggctt
ttcagcgttgccctttatacaggcgagatcaggacaattcgccgctttgttgaaaaagat
gccaccaggcagcgacttgtcattctggtcaaggacaacggtcagccgcccctctcggcc
accgtctctatcattctgtcagtagtggacaacgtgccggaatccctgtcagattttggc
gacctcaccctaaacccccagccttcgtccaatctcgccctctatctaatcgtgtcactg
agcaccatctcgcttatctttctcatagccattattgtgctcgcctctgtcaagtgttac
aaagatcgagacgcactcaacggcttcggtctctccacagtcggagccgcttgttgtggt
atagaaccggagcccccgaccgaagtattcaaaaaatcgaatttaaatttacagatctcc
acaggcaccaaagtgcccacgaattgcatggaggtgaacagcacgaacaccttgtctcaa
gcctattgttacaaggtttgtctgacaccagagtcggcgaaaagcgacttcatgttcctg
aagccgtgtagtcccgaaacgccgaggaacaatgccaatccaaagggaactgaaacgctt
ggatggaacgcgcaaagccggaataatggagcaactactcccagtgagctgaagcaacca
aatacagactggcctctcacaaagaatcaaacgtcctctcttaaaagctacaattctatc
aatatggatggtactctgatgcgcaaggcaatgcagacagacccagaaaactttgtcagc
ccaatggcagggcagtactggacctggggcaatcatatgcgtggtcccaaagttgaccac
tgttcagcgactttgcgccctccgtcgacagaatacaggacatctccccccatcgctggc
cctccccctcgggcctggactcctcgctacgtcccccctcagcaccagactctccagcag
gctcagacgtccccccaccccacccccaccccacacccgtcccacccgccgcccgactac
cagcacaacgtctacatccccggcacaccctcggccctgtgcactttgcggcccagccac
cggagtagcgagctggacgtgcacaacgccttctccaccttcggcaagaagaggcgcttc
cactacgagcagcgggacgagacacccacacctgagatcatcaacaacgacctgtacaac
aactag
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