Clupea harengus (Atlantic herring): 105893104
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Entry
105893104 CDS
T09045
Symbol
cstf2
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105893104 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105893104 (cstf2)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105893104 (cstf2)
U7-dependent histone pre-mRNA processing factors
105893104 (cstf2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
105893104
NCBI-ProteinID:
XP_012674912
Ensembl:
ENSCHAG00000010095
UniProt:
A0A6P3VMB3
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Position
20:complement(12484499..12496033)
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AA seq
512 aa
AA seq
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MANLAAAAAAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRET
GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSMCLGTGAPII
ESPYGDGCIAEEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYA
LLQAQVVMRIVDPEIALKMLHRQAPVQPLIPGGQSAAAPTSIQPLPQPNVPISQPQPMPG
MHVNGAPQMMQPPQMGGVPGPMQGQGPVGPAGGMQPQMGMPQGGPMDRGQVPMSDPRAPM
RGGVPPPGPTGVPPRGLLGDGPNDPRGGTLLNVTGDVVEPSRGFMGAPPHQGPPMHMGPP
DMRGPHDMRGPPMGEPRGMMGEPRGPMMDQRGPPMEARAPMPGGRDPRAVDARGPPAGQR
VPMSSGMSGPAPHSMQAAAPPSSRQGPGMSGAPPSGGFSPGQSQVSSQDQEKAALIMQVL
QLTPEQIAMLPPEQRQSILILKEQIQKTAGAP
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacttagctgctgccgctgcagctgctgcagcgagagatcccgctgtggaccgt
tctttgcgttcagtttttgtgggaaacataccctatgaggccacggaagaacaactgaaa
gatatcttctcagaggtgggacttgttgtgagcttcaggttggtgtacgacagagagact
ggcaagccgaaaggatatgggttctgtgagtatcaggaccaggaaacggcccttagtgcc
atgcggaacctgaatgggagagaattcagcggtagagctctgcgagtcgacaatgctgcc
agtgaaaagaacaaggaggagctgaaaagtatgtgtttgggaacaggtgctcccattatc
gagtccccatacggtgatggctgtattgcagaggaggctcctgagtccatcagccgagcc
gttgccagcctgcccccagagcagatgtttgagctgatgaaacagatgaagctttgtgtt
caaaacagcccacaggaggccaggaacatgctgctgcagaaccctcagctggcctatgcc
ttgctccaggcccaggtggtcatgaggattgtagacccagagatcgctttgaaaatgctc
caccgccaggcgccagtccagcccctgatccccggcgggcagtctgcagcagcccccacc
tccatccagcctcttccacagcccaacgtccccatctcccagcctcagcccatgcccggg
atgcacgtgaatggagcccctcagatgatgcagccccctcagatggggggtgtgcctgga
cccatgcaaggacaaggcccagtggggccagcaggagggatgcaaccgcagatgggaatg
ccccagggcggccctatggacaggggacaagtgcccatgtctgaccctcgggcgcccatg
cggggcggtgtccctcctcctggccccaccggcgttccccccaggggcctgctgggcgat
ggacccaacgatccccgaggggggacgctgctcaacgtcactggtgatgtggtggagccc
agccgtggcttcatgggggctccaccacaccagggcccacctatgcacatgggacctcca
gacatgcgagggccacacgacatgaggggcccgcctatgggcgagcccaggggcatgatg
ggagaacccagaggaccaatgatggaccaacgaggcccgccaatggaggcaagagcacca
atgccaggaggtcgtgaccccagggcagtggacgcacggggccctccggcagggcagagg
gtccccatgtccagcggtatgtctgggccagcaccacactcaatgcaggctgccgcccca
ccctccagcagacagggtcctggtatgtctggagcgcctccgtctggagggttcagtccg
ggccaaagccaggtgtcgtctcaggaccaggagaaggctgccctgatcatgcaggttttg
cagcttaccccagaacagatcgccatgttgcctccagagcaaaggcaaagtatcctcatc
ctaaaagaacagattcaaaagactgctggagcaccctga
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