KEGG   Clupea harengus (Atlantic herring): 105893195
Entry
105893195         CDS       T09045                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RNF4-like isoform X1
  KO
K22651  E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27]
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:char04121]
    105893195
Enzymes [BR:char01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105893195
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    105893195
SSDB
Motif
Pfam: zf-C3HC4_2 zf-RING_5 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 Prok-RING_4 zf-UDP zf-RING_10 zf_RING_Vps8 zf-rbx1 zf-C3HC4_4 zf-RING_4 zf-LITAF-like DUF1272 zf-Nse zf-RING_Vps41 DZR
Other DBs
NCBI-GeneID: 105893195
NCBI-ProteinID: XP_012675019
Ensembl: ENSCHAG00000002682
UniProt: A0A6P3VLS5
LinkDB
Position
8:880706..888457
AA seq 177 aa
MSGTTQRKKRVGDACSRRGSKRSRRNTDSMTSEEPPETIDVENDRLRGEEVVDLTSETTE
ASVVDLTNTDCVVLLDEGSQSQQSRATEGYVLISDEEETPGITPAANSRFRSTTGEVSCL
VCFNTYNEIVQSGRGMVSTLCGHMFCKQCLRESLDRTHACPRCQTKLTRRQYHPIYF
NT seq 534 nt   +upstreamnt  +downstreamnt
atgagtggaacaactcagagaaagaaacgggttggtgatgcttgctcaagacgcgggtcc
aagagaagtagacgtaacacagacagcatgacctcggaggaacctccagagaccattgat
gttgagaatgaccgacttcgtggtgaagaggtagtggacctaacaagcgaaaccacagaa
gcatctgtggttgacctcacaaacactgactgcgttgtgctgttggatgaaggttcacag
agccagcagagcagagccactgaaggctatgttctgatcagtgatgaagaagagaccccc
ggcatcactccagctgccaactctagattcaggtcgacaacaggtgaagtgagttgtctg
gtatgcttcaacacatataatgagattgtgcagagtggcagaggaatggtgtccaccctg
tgtggtcacatgttctgtaagcaatgcctgcgtgaatcccttgaccggacgcacgcctgc
cccaggtgccaaactaaactgactcgtcgacagtaccatcccatctatttctga

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