KEGG   Clupea harengus (Atlantic herring): 105893298
Entry
105893298         CDS       T09045                                 
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X2
  KO
K06237  collagen type IV alpha
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04510  Focal adhesion
char04512  ECM-receptor interaction
char04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:char00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    105893298 (col4a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    105893298 (col4a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    105893298 (col4a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:char04147]
    105893298 (col4a2)
   00536 Glycosaminoglycan binding proteins [BR:char00536]
    105893298 (col4a2)
Exosome [BR:char04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   105893298 (col4a2)
Glycosaminoglycan binding proteins [BR:char00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   105893298 (col4a2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 105893298
NCBI-ProteinID: XP_012675145
UniProt: A0A6P3VL43
LinkDB
Position
2:17608977..17673291
AA seq 1666 aa
MKFEVRMEGMMVHHHIGKQKLLRFLILCLTFLILISETNAGVKKSNEGCGGRDCSGGCKC
YPEKGSRGIPGPLGSQGPNGPPGREGDPGIEGAKGQKGDYGRTGVTGLKGSVGMTGIPGF
SGGNGIPGHPGQGGPRGKPGADGCNGTRGDGGLPGTSGTSGRSGYPGQPGLKGEKGDDLD
LHIFMRRFQGEPGPAGPAGYNGAPGDPGWVGPRGTPGPQGPTGFQGPKGEKGTMTQVIRG
EKGELGDIGEPGIPGNLTYPHSQLPSPLLPGPDGARGLKGQRGDNADNKGEDGIMGMPGP
RGLPGLNGQPGLRGEPGYPGFSGRRGQKGAIGEAGELIYSDSFGGQRGVGLPGPPGQLGP
QGERGPQGEKGLPGRPGPPSSEQQTWDFFGPFGEKGFKGQKGSEGEAGTPATQPGPPGDD
GSAGHTGPPGPRGSWGEHLKGAAGPGGRPGSAGRRGGKGDHGDCECNSVSELPGLPGPAG
SIGDLGMSGEWGQQGDQGDQGRPGTSGVTGFPGPDGSSGPKGRKGEPTVATQKGSPGDPG
DPGSSGGPGPQGRNGFSGAPGIPGIQGSQGDGPVGQSGEPGNGGRPGLPGFPGAPGEPGE
ALGAAKGETGPSGDPGIQGYDGMPGPAGTPGECDAVPGPPGKPGSPGLPGLDGFPGLPGI
KGFAGLSGEEGVKGERGELGRGGLPGPNGFTGPRGELGIPGFKGSDGNHGQTGRDGRNGE
PGQKGAHGEVLYASTGSPGEPGPPGQLGEPGLQGAPGPRGYPGMDGMPGMIGFKGEFGPA
GLSGELGRPGPKGKHGFPGLPGTAGIPGPQGTNGLPGFPGDRGTDGDPGPPGPVGLKGSS
GAPGGEGAPGNTGPLGDSGNPGSAGYIGVEGLKGYQGYQGMPGFTGMRGVSGLKGYSGVK
GQPGLPGGTGLKGGMGSPGLKGARGMPGPPGQKPVMMLKVKEEMKGAKGDHGTLGLHGFT
GPRGPKGLPGVPGAEGYDGYPGEPSSVKGVHGECGVEGFTGQKGLPGPTGPEGIGGFPGM
PGYRGEKGGTGAFGRTGETGFKGVKGEHGPTIDLPGATGHRGEPGLPGFSGGLGLIGVPG
DRGNTGFFGMNGRKGGPGEPGGFGGLGSDGQQGSPGTQGHKGWPGVPGTSGNKGTDGHGG
QPGFPGQKGIVGLDGLKGHKGVPGIPGGDTVGPPGHPGTKGQKGESGVPSTEVGNRGGDG
LQGFPGDQGDQGWPGPQGPQGSPGFGGTPDRPGRPGDPGFPGQRGFPGFPGPRGTPGIPS
PFGAKGEKGIAGLFGLPGLRGLHGDRGQRGYSGPEGVSGQKGVKGETGMMGPPGKAGLKG
DRGFTGPKGQTGPTGFPGTTGSPGLPPSPVQVPGERGPQGPPGSWGPAGSTGQSGYPGTP
GDQGLLGPKGHKGMPGISGHSGTPGFRGDPGHGGHSGLQGLEGSRGHPGVAGLPGMPGRS
VSVGYLLVKHSQSEQSPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFSTMP
FLYCNPGDLCYYANRNDKSYWLSTTAAIPMMAVERHDIKQYISRCSVCEAPSVAIAVHSQ
DTTIPQCPQGWRSMWIGYSFLMHTASGGEGGGQSLVSPGSCLEDFRTAPFIECNGAKGSC
NYFANEYSFWLSSTEQNFHSSPRSETLKAGQLLSRISRCQVCMKNL
NT seq 5001 nt   +upstreamnt  +downstreamnt
atgaaatttgaagtacgaatggaggggatgatggtccaccaccacatcgggaaacagaaa
cttttaaggtttctcatattgtgcctgacgttcctcatcttaatatctgaaacgaacgca
ggtgttaagaagtccaacgaaggttgcggaggaagagactgcagtggaggctgcaaatgc
tacccagagaaaggatccaggggcatcccaggacctctgggctcacaggggcccaatggc
ccacctggacgtgagggggaccctggcattgagggggcgaaaggacagaaaggggactat
ggaagaacaggcgtcactggccttaaaggatctgtgggaatgacaggaattccaggtttt
tcaggaggcaatggcattccaggacacccaggacaaggcggtccgcgggggaaaccgggt
gcagacggctgcaacgggacgaggggagacggggggttgccagggacatcaggcacctcg
ggcagatcaggatatccgggacaaccaggtttgaaaggagagaaaggtgacgatttggat
ctccatatcttcatgcgaaggttccagggagagcctggcccggcaggacccgccggatat
aatggggcgccgggtgacccaggatgggtggggcctagaggtactccagggccacagggg
ccaactggtttccagggacccaaaggcgaaaaggggacaatgacccaagtgatcagggga
gagaaaggagaactgggggacattggcgagccagggattccagggaacctcacctacccg
cacagccagctcccctctccattgctcccaggtcccgatggtgcaagagggttgaaaggt
caacgtggagacaacgctgacaacaaaggagaagacggtatcatggggatgccaggacca
cggggcctgcctggtttgaatggacagccaggactaaggggtgaacccggatatcctggc
ttttctggaagacgaggacagaagggtgcgataggagaagctggcgagctcatctacagt
gattcctttggtgggcagcgaggagttgggctgccgggccccccaggacagctaggcccc
cagggagagaggggaccccagggggagaaaggcctgcctggtcgccccggacctccctcc
tcggaacaacaaacatgggacttttttggcccatttggtgagaagggcttcaaaggccag
aagggttctgagggggaggcaggaacccccgccacacagccaggaccccccggagacgat
ggctcggcgggccacacgggaccgcctggacctcgaggatcatggggagagcatctgaaa
ggagcggcaggcccggggggacggccaggttcagctgggaggagaggagggaaaggagat
catggtgactgtgagtgcaactctgtaagtgagcttcccggcctccctggtcctgctggt
agcataggcgaccttggcatgtcgggagagtggggtcagcaaggtgaccaaggggaccaa
ggtcgccctggtacatctggcgtaactggttttccgggacctgatggctcttctgggccc
aagggaagaaaaggagaacccacagtggcaactcaaaaaggatcaccaggggacccagga
gacccaggatcgtcaggaggcccagggccccaaggccgcaacggcttcagcggggctcca
ggtatccctggaatccagggctcccaaggcgatgggccggttggacagtctggagaacct
ggcaatggaggccgaccaggtctgcctggattccctggagcaccaggggagcctggcgag
gcattaggtgccgccaaaggggagacgggtccgtccggtgaccccggaatccaaggctat
gatggcatgcccggtcccgcgggaaccccaggggagtgtgatgcagtccctggacctcca
ggtaagccaggaagccctggccttccggggctggatggtttcccagggcttccagggatc
aaaggttttgcgggcctctctggggaggagggggtcaaaggagagagaggagagctaggc
cggggaggactccctggtccaaatggctttactggtccccgtggagagttgggtatacct
ggtttcaaaggttctgatggaaaccatggccaaactggtcgcgatggtcgaaatggtgaa
ccaggtcagaagggtgcccatggtgaggtgttatacgcttccactgggtcccctggcgaa
cctggacctcctggacaacttggagagcccggactccaaggagcacctggacctcgggga
tacccaggaatggatggcatgcctggcatgataggcttcaagggtgaatttggtcctgct
ggcctgtcaggagaattaggtcgaccaggcccgaaaggaaagcacggtttccctgggctg
ccagggacagctggtattccaggacctcaaggaaccaacggacttccaggtttccctgga
gatcgggggactgatggagaccctggccccccagggcccgtcggccttaaagggtcttct
ggtgcacctggcggtgagggggcccctggaaacacagggccactgggagattccggaaat
ccaggatcagctggatacattggtgttgaaggtttgaaaggttaccaaggttatcaaggt
atgccagggtttactggtatgcgaggggtgagtggattgaagggctattctggagtgaaa
ggacagcctggacttccaggaggaacagggctgaagggtggcatgggaagtcctggccta
aagggggccagaggcatgccaggcccaccaggacagaagcctgtcatgatgctaaaggtg
aaggaggagatgaagggtgcaaagggggaccacggcactctaggcttgcatggcttcacc
ggccccagagggcctaaaggcctcccgggggttcctggtgctgagggctacgatggctac
ccaggagagcccagtagtgtgaagggtgtgcacggagaatgcggagttgaggggtttact
ggccagaaaggtttgccaggtcccaccggtccagaaggaattggaggatttcctggaatg
ccaggatacaggggggagaagggtggaactggtgcctttgggcgaacaggagagaccggg
ttcaagggtgtcaaaggtgagcatggtcctactattgatctccctggagctaccgggcac
cggggtgaaccagggctaccaggtttttcaggtggcctggggctcatcggtgtcccggga
gacagaggcaacactggcttctttggtatgaatggcaggaaaggaggaccaggtgaacct
ggtggttttggaggcctagggtctgacggacagcaggggtcccctggcacccagggccat
aagggctggcctggagtcccgggtacctccggaaacaaaggaactgatggccatggtgga
caaccaggtttccctggccagaaaggaattgttggactcgatggcctcaaaggacacaag
ggagtgcctggcattccaggtggtgacacagtcgggcccccaggtcaccctggtactaaa
gggcagaagggagagtccggtgtccccagcacagaggtcggcaaccgagggggagatggc
ctgcaaggattcccaggagatcaaggtgatcaaggatggcctggccctcaaggcccacag
ggttccccagggtttggaggcactcctgacagacctggacggcctggagatcctggtttt
cctggacagagaggattcccaggttttcctggacccagaggcactccgggcatcccatcc
ccatttggagcaaagggagagaagggcatagcaggcctgtttggcttacctggcctgagg
ggcctccacggagacagaggacagcgaggatactctggaccagaaggggtgtcaggacag
aaaggggttaaaggtgaaacaggaatgatgggacctcctggtaaggcgggtctaaaagga
gaccgtggcttcacgggtccaaaaggacagactggaccaacaggtttccctgggactaca
ggatccccaggacttcctcctagcccagtccaagtccctggagagagagggccacagggg
ccacctggatcatggggacctgctgggtctacaggacaatcaggctacccaggaacacca
ggagatcaaggcctactggggcctaaaggacacaaaggaatgccaggaatcagtggccat
tcgggaacacctggtttccgtggagatccaggacacgggggacactctggtcttcaaggc
ctggaaggttctcggggccaccctggcgtcgctggtctgcctggcatgcctgggcgcagc
gtgagcgtgggctacctgctggtcaagcacagccagtccgagcagtcgcccatgtgtcca
gtgggcatgtccaagctgtgggacggctacagcctgctctacttcgagggccaagagaaa
gcccacaaccaagacctaggtctggcgggctcttgcctccctcgcttcagcaccatgccc
ttcctctactgtaaccctggggatctgtgctactatgccaaccgcaacgacaagtcctac
tggctgtccaccacggcagccattcccatgatggcggtggagaggcacgacatcaagcag
tacatcagccgctgctctgtgtgcgaggcaccctcggtggccatcgccgtgcacagccag
gacaccaccatcccgcagtgcccccagggctggcgcagtatgtggatcggatactccttc
ctcatgcacactgcatcgggaggcgagggcggtggccaatcgctggtgtcgccgggctcg
tgcctggaggacttccgcaccgcgcctttcatcgagtgcaacggcgccaagggctcgtgc
aactacttcgccaatgagtacagcttctggctctcgtccaccgagcagaacttccacagc
tcgcccagaagtgagacgctcaaggccggccagctgctctcgcgcatcagccgctgccag
gtctgcatgaagaacttgtga

DBGET integrated database retrieval system