KEGG   Clupea harengus (Atlantic herring): 105893319
Entry
105893319         CDS       T09045                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04510  Focal adhesion
char04512  ECM-receptor interaction
char04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:char00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    105893319 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    105893319 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    105893319 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:char04147]
    105893319 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:char00536]
    105893319 (col4a1)
Exosome [BR:char04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   105893319 (col4a1)
Glycosaminoglycan binding proteins [BR:char00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   105893319 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 105893319
NCBI-ProteinID: XP_031440808
UniProt: A0A6P8GPY2
LinkDB
Position
2:complement(17558941..17608803)
AA seq 1640 aa
MLLFSSTLFLLAVFSFSIEAKSEGGGCSGSSCGKCDCNGVKGLKGERGFPGLQGNMGFPG
MQGHEGPPGPMGPHGDNGGTGAPGTKGTRGPPGLPGFPGNPGLPGIPGQDGPPGPHGIPG
CNGTKGDPGLHGIPGVPGLQGPPGIPGLLGMKGDPGGIIGGIIPQKGEPGRHGPSGQPGF
KGIPGIPGQQGPQGPSGQRGNPGLPGPKGDQGDRLSFQSEKGQKGDQGLRGPPGPPGPGQ
EQTSTTTITIPGPPGGRGALGEKGEKGFCIPYANDVKGAQGPPGPIGKPGKDGFPGLKGE
SGFSGNPGSNGITGEKGERGPPGFGDGPPGPTGPPGIPGPEGERGFPGLQGDAGPPGRAV
EGPQGERGLPGEIGQKGDRGADGLSLPGLQGQDGVNGPPGPPGPLSGPCNVPRGNPGPPG
KLGLQGEVGQKGDKGDTCFECSAIERPGLPGPAGPKGNQGYPGPAGSKGEKGLSGTPGGQ
GDPGREGSPGLMGSPGAVGSPGDIYVAPGLKGDKGLSGHEGSTGLPGLDGHPGRDGISGL
PGPKGEPAKVGIKGDRGRDGDQGLSGPPGERGPPGIPGYGRPGLAGEKGSSGTPGVPGNP
GVPGPKGDAGKGVSSPGPHGTPGPRGEDGRPGIQGDRGAQGTPGIPGYQGLKGEPGMPGI
GLPGPPGPKGYSGTPGAPGIPGESGRPGRDGNPGLPGFGGPKGEPGRGLPGPKGSMGQTG
IAGFPGLKGSMGQPGIPGTEGRTGLPGTQGIKGDAGPQGQQGTEGPPGPPGFGESGAPGP
MGPPGDPGTYGSAGEKGEKGYPGGPGLDMPGPQGEKGTPGFPGVPGQKGLPGRPGLSGRD
GFPGQQGIKGDMGMIGTPGIPGKPGTPGGPGTPGPRGESGSSGPRGEFGVPGPQGQTGEP
GLEGPPGNITMNEMEHMKGEKGDLGDQGRPGVSGDKGYRGVHGDPGLAGKDGEPGLPGNQ
GEKGDSGVPGEPGSTGEPGPQGGMGAMGLPGSSGPKGAKGVTGTPGHHGFKGTEGVKGDS
GEPGLPGIGIPGQPGEKGASGLPGHEGPSGGKGQKGGEGQPGMPGIPGEKGDLGRIGYPG
SPGRPGEKGIGGLPGTPGEPGLSGRPGDPGLEGPPGGKGDKGQPGTDGFPGSSGERGDPG
IAGKGQPGHPGEFGPKGDIGIPGLPGTPGMSGVPGIKGDKGLAGDLGKPGQPGDRGLPGS
SMEGPKGNQGTPGVTGESGSVGAPGLPGVPGTVGSRGDKGDQGFTGPQGTQGYKGDKGPP
GIPGEPGLPGYGGIKGEMGIQGFPGFSGLKGEPGGGGLSGETGDRGFPGLKGNDGPPGPS
GGHTFIKGDIGLIGQPGPQGPAGPQGYPGPKGLHGVTGQQGLKGDEGTPGYNGHAGAKGE
RGQNGLTGPRGLPGPPGPDGVPGQVGPPGPSSMNHGFLVTRHSQSVEIPQCPYGTTMIFD
GYSLLYIQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSFWLTSPEPM
PMSMAPVTGQNIKPFISRCAVCEAPAMVIAVHSQTIMIPSCPSGWDSLWIGYSFVMHTSS
GAEGSGQALASPGSCLEEFRSATFMECHGRGSCNYYSNSYSFWLATIEDEEMFEKPNPAT
LKAGELRTHVSRCQVCMKRT
NT seq 4923 nt   +upstreamnt  +downstreamnt
atgctgttgttcagcagcactctgtttcttctggcggttttctccttcagtatagaggca
aaatctgaggggggtggttgctcagggtcatcatgtggaaagtgtgactgcaatggtgtc
aaagggcttaagggtgagaggggatttcctggcttgcaaggcaacatgggatttcctggg
atgcaaggacatgaaggccctcctggtcccatgggacctcatggcgataatggcgggact
ggagctcctggaacgaaaggaacacgtggacctccagggctgccaggttttcccggaaac
ccaggattacctggtattccagggcaggatggcccccccgggcctcatggtatcccagga
tgcaacggaacaaagggagatcccggtttgcatggaatcccgggtgttccaggcctccaa
ggtccccctggtataccaggactactcggcatgaagggcgacccaggcggtatcattggt
gggatcatccctcagaaaggtgaaccaggaagacatggaccctcaggacagcctggattc
aaaggaattccaggcataccaggacaacaggggccccaagggccatcaggacagagaggt
aacccaggtctacctggcccgaagggagatcagggtgacaggctgtctttccagagtgag
aagggacagaagggtgaccaggggcttagaggccctcctgggccaccagggccgggacag
gagcaaacgtccaccactaccatcaccatccctggacctccgggaggcagaggtgctctg
ggagaaaaaggcgagaaaggtttttgtatcccatatgccaatgatgttaaaggagcacaa
ggtcctcctggacccataggtaaaccaggaaaagacggtttccctggactgaagggagag
tcaggcttctctggcaaccctggatcaaatggcataacgggcgagaaaggagagagagga
cccccaggatttggtgatggcccacctggtcccactggcccgcctggaattcctggaccg
gaaggagagagaggattccctggtctacaaggagatgctggaccacctggccgggctgtc
gagggccctcaaggggagaggggtctcccaggagagattggacagaagggagatagaggc
gctgatggattgtcacttcctgggctacagggtcaagatggcgttaatggcccacccggt
ccacctggacctttaagtggcccctgtaatgtgccacgtggtaaccctggccctcccggg
aaactaggacttcagggagaagtgggacagaaaggtgacaaaggagacacctgttttgag
tgctctgctattgaacgacctggattgccgggtcctgctggaccaaaaggaaaccaagga
tatcctggtcctgctggttctaaaggagagaaaggtctatctggaactcctggtggccag
ggagacccaggtcgagagggctccccaggtttgatgggttctccaggtgccgtcggttct
ccaggggacatttacgtggcccctgggctgaagggagataagggcttatctggccatgag
ggcagcacaggtttgcctggcctggatgggcatccaggaagagatggaatatcaggttta
cctgggcccaaaggagagccggccaaagtgggaattaaaggtgatcgtggtcgagatggt
gatcaaggtctgtctggaccccccggagagcgaggacctcccggtatcccagggtatggc
cgtccaggtttagcgggagagaagggtagctctgggacaccaggtgtgccaggaaatcct
ggagtaccaggacctaaaggtgatgctggaaaaggtgtgagctcacctggaccacatggt
acacctggaccacgaggtgaagacggtagacctggcattcaaggtgacagaggagctcaa
ggtacccctggaataccaggatatcaaggactgaagggtgaaccaggcatgcctggcatt
ggacttcctggtccacctggacctaaaggatattctggaacaccaggagcaccaggaatt
ccaggagaatctggtcgtccaggacgggatggtaacccaggattaccagggtttggtggg
ccaaagggtgagccaggacggggtcttccagggcctaaaggatccatgggtcaaacagga
attgcagggtttccagggctaaagggaagcatgggccaaccaggtatcccaggcactgaa
gggcgaactgggctacccgggacacaaggaatcaaaggtgatgctggaccccaaggtcaa
caaggtactgagggaccacccggacctccaggattcggagaatcaggtgcacctggccct
atgggacctcctggggatcccggaacatatggctcagccggtgagaaaggagagaaaggt
tacccaggtggccctggtctggacatgccagggcctcagggagagaaggggactcctggc
ttcccaggagtgccaggtcaaaaagggttaccggggcgacctggtctctctggacgagat
ggcttccctgggcagcaaggtattaaaggagatatgggaatgattgggacaccggggata
cctgggaagccgggaacacctggcggtccaggcacacctggtccaagaggtgagtctggg
agctctgggcccaggggagaatttggtgtgcctgggcctcagggacagacaggagaacca
ggtcttgagggtccgccaggcaacattaccatgaacgaaatggagcatatgaagggagag
aagggtgatctcggagaccaaggtagacctggtgtatctggagataaaggctaccgagga
gtgcacggggaccctggacttgcaggaaaggatggagagcctggtttacctggaaaccaa
ggtgagaaaggtgattctggcgtacctggagaaccaggatcaactggagaacctggacca
cagggtggtatgggagctatgggattgccaggttcgtctgggccaaagggtgccaaaggt
gtgactggtacccctgggcaccatggctttaaaggaacagagggagtgaaaggtgattcg
ggtgaacccgggttgccaggcataggcattcctggacaacctggagaaaagggtgcaagt
ggcttgccaggacacgaaggcccttctggtggcaaaggacagaagggtggtgagggacaa
ccaggaatgccgggaatacctggagaaaagggagacctaggacgaattggctatccaggc
agtcccgggcgacctggagagaagggtattggagggttgccagggacacctggagaacct
ggcctttcaggacgaccaggtgacccaggtttggaaggtcccccagggggcaaaggggac
aaaggtcaacctggtacggatggatttccaggatcatcaggagagagaggagacccgggt
attgcaggcaaaggccagccaggacatcccggggaatttggccccaaaggtgacatcggc
attcccggacttccaggaacacctggcatgtctggagtcccaggtatcaaaggtgacaaa
ggacttgcaggtgacctagggaaaccaggacagccaggagacaggggcctacctggatcc
tctatggaagggcccaaaggaaaccaaggaacccctggggtgacaggagaatcaggttct
gttggtgccccaggtctgcctggtgttcctggcaccgttggttccaggggagataaggga
gatcagggattcacaggaccacaaggaacccagggctacaagggagacaaaggtccacca
ggaattcccggtgagcctggtcttccaggttacggtggaattaaaggagagatgggcatt
cagggcttccctggcttctcaggcctcaagggcgagcctggtggtggtggtctgtcagga
gagactggagacagaggattccctggtcttaaaggtaatgatggacccccgggaccttct
ggcggtcacacattcattaaaggagacattggactcataggccaaccaggaccccaagga
cctgctggacctcaagggtacccaggaccaaagggactacacggtgttactggacaacag
ggtcttaaaggtgatgagggcacacctgggtataatggccatgcaggagccaaaggagag
cgtggtcaaaatggactcacaggacccagaggattacccggaccccctggtcccgatggc
gtacctggtcaggtaggcccccctggcccctcttctatgaaccacggcttcctggtgacg
cgtcacagccaatcggtggagatcccccagtgtccgtacggcacaactatgatcttcgac
ggctactctctgctctacatccaaggcaatgagagatcccatggacaggacttgggtact
gctgggagttgcctgaggaagttcagccccatgcctttcctcttttgcaacatcaacaac
gtctgcaactttgcctctcggaacgactactccttctggctgacctctccggagcccatg
cccatgagtatggccccggtcaccggacagaacatcaagcccttcattagcagatgtgcg
gtgtgtgaagctcctgccatggtaatcgctgtgcacagtcagaccatcatgattccttcc
tgcccgtcaggctgggactcgctgtggattggctactcctttgtcatgcacaccagctca
ggagctgagggatcgggtcaggctctggcctctcctggttcgtgtttagaggagttccgc
tccgccaccttcatggagtgccacggccgcggctcctgcaactactacagcaactcctac
agcttctggctcgccaccatcgaggacgaggagatgtttgagaaacccaaccctgcgacc
ctgaaggcaggagagctgcgcacgcacgtcagcaggtgtcaggtgtgcatgaagagaaca
taa

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