Clupea harengus (Atlantic herring): 105893344
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Entry
105893344 CDS
T09045
Symbol
skp2
Name
(RefSeq) S-phase kinase-associated protein 2
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04068
FoxO signaling pathway
char04110
Cell cycle
char04120
Ubiquitin mediated proteolysis
char04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105893344 (skp2)
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
105893344 (skp2)
04150 mTOR signaling pathway
105893344 (skp2)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
105893344 (skp2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105893344 (skp2)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
105893344 (skp2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
F-box-like
F-box
LRR_At5g56370
LRR_R13L1-DRL21
LRR_At1g61320_AtMIF1
LRR_NXF1-5
LRR_4
LRR_6
LRR_8
LRR_RPS2
Motif
Other DBs
NCBI-GeneID:
105893344
NCBI-ProteinID:
XP_012675202
Ensembl:
ENSCHAG00000017176
UniProt:
A0A6P3VLM7
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All DBs
Position
21:3485604..3492957
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AA seq
408 aa
AA seq
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MSLERPLQELPLLTEDLEVSLLASQKSKRQKRLHVACLDAENTPQELIQNWSPPHKHPRV
TDKGKENVFVLARRPRRRKDSIGACWDLLPDELLLRILSCLSLRDLLRTSRICKRWHQLA
FDESLWQSVDLEGKVRLGSALGQVLSAGTLTLRCPHTSIGEPCFTHKEQLRVQHMDLSGC
TVSPEVINDVISRCTQLQNLSLEGLVLSDGILQSIARNPQLGRLNLSGCSGFSSETLANM
LQSCTRLTELNVSWCDFSNEHVKAVVSDVTPSISQLNISGYRQNLTMEDVRSLVERCPNI
VNLDLSDSVLVTTDSFPVLQQLPSLRQLGLSRCYQIHPAALLDFERFEGLQTLEVFGLVQ
DNHLTALMKELPKLRINSQRFSNIARPSPSGRGGGSMWGLTCRLVYKL
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctggaaaggccccttcaggagctccctctcttgaccgaagatctcgaggtctcc
ctgcttgcctcacagaaaagtaaacggcagaaacgactccacgttgcatgtctcgatgcc
gaaaacactccacaggaactaattcagaactggtcgccacctcataaacacccacgggtt
acagacaagggtaaagaaaacgtgttcgttttggcaaggcggcccagaaggcggaaagac
tctataggtgcatgctgggaccttcttcctgatgagctgctgctgaggatcctttcctgc
ctctccctgcgtgatctgcttcggacctcccggatctgcaaacgttggcaccagctcgcg
tttgatgagtctctctggcagagtgtggatctggagggaaaggttcgacttggctctgct
cttggccaggtgctgtctgccggtactctgacactacgatgcccacacacttctattgga
gagccatgctttacccataaagaacagctgcgggttcagcatatggacctctctggctgc
accgtctcccctgaggtcattaatgacgtaatttcccgctgcacccagctccagaacctg
agtctggaagggcttgttctttcagatggcattctacagtctattgcacgaaatccacag
ctggggcgcctcaacttaagtggttgttcaggattctcctctgaaacactggccaacatg
cttcagtcctgcacacggctgaccgagttgaacgtgtcctggtgtgacttcagcaacgag
cacgtgaaggccgtggtgagcgacgtcaccccctccatctcccaactcaacatcagtggc
taccggcagaatctcaccatggaggatgtccggagcctggtggagaggtgtcccaacatt
gtcaatctggacctcagtgatagcgttctagtgacgacagacagtttccctgtcctgcag
cagctgccgtccctcagacaactaggcctgagccgctgctatcagatccacccagcagca
ctgcttgactttgagcggtttgaggggctgcagacgttggaggtgtttggcctggtgcaa
gacaaccacttgacggcactgatgaaggagctgccgaaactgcgcataaactctcagcgc
ttcagcaacatagccaggccatctccctcaggccgaggcgggggatccatgtggggactc
acttgccgtctcgtctacaagctctag
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