Clupea harengus (Atlantic herring): 105893383
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Entry
105893383 CDS
T09045
Symbol
rab5b
Name
(RefSeq) ras-related protein Rab-5B isoform X2
KO
K07888
Ras-related protein Rab-5B
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04137
Mitophagy - animal
char04144
Endocytosis
char04145
Phagosome
char04148
Efferocytosis
char05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105893383 (rab5b)
04145 Phagosome
105893383 (rab5b)
04137 Mitophagy - animal
105893383 (rab5b)
04148 Efferocytosis
105893383 (rab5b)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
105893383 (rab5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105893383 (rab5b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105893383 (rab5b)
04031 GTP-binding proteins [BR:
char04031
]
105893383 (rab5b)
Membrane trafficking [BR:
char04131
]
Endocytosis
Rab GTPases and associated proteins
Rab GTPases
105893383 (rab5b)
Endosome - Lysosome transport
105893383 (rab5b)
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
105893383 (rab5b)
Exosomal proteins of other body fluids (saliva and urine)
105893383 (rab5b)
Exosomal proteins of colorectal cancer cells
105893383 (rab5b)
Exosomal proteins of melanoma cells
105893383 (rab5b)
GTP-binding proteins [BR:
char04031
]
Small (monomeric) G-proteins
Rab Family
Rab5/17/22/31 [OT]
105893383 (rab5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
GTP_EFTU
Gtr1_RagA
RsgA_GTPase
MMR_HSR1
SDR-like
AAA_16
Tfb2_C
Motif
Other DBs
NCBI-GeneID:
105893383
NCBI-ProteinID:
XP_012675247
Ensembl:
ENSCHAG00000014710
UniProt:
A0A6P3VL81
LinkDB
All DBs
Position
2:complement(32511624..32531534)
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AA seq
214 aa
AA seq
DB search
MSTGGNGRPNGSLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLAQ
SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQR
QASPNIVIALAGNKADLAEKRLVEYEDAQTYAEDIGLLFMETSAKTAMNVSDLFFAIAKK
MPKTDSQNLTHSARNRGVNLQDPDSQSSQRCCGN
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccggtgggaatggtcgacctaatgggagcttgccccagaccaagatctgccaa
ttcaaattggtgctgctgggggatatggcagtggggaagtccagccttgtgcttcgattt
gtcaagggccagtttgatgaatttcaggagaccaccatcggagctgcattcctggcccag
tcagtatgtctggatgacacaacagtgaagtttgaaatctgggatacagctggccaggag
cgttatcacagcctggcacccatgtactatcgtggtgcacaggcagccattgttgttttt
gacatcactaagccggagacatttgaacgtgccaaggcctgggtgaaggagctgcagaga
caagccagtcccaacatagtgatcgccttggcagggaacaaggcagatctggctgagaag
agattggtggagtatgaggatgcccagacatatgcagaagacattggtttactcttcatg
gagacgtcggccaagaccgccatgaatgtcagtgatctgttctttgccatcgcgaaaaag
atgccaaaaacagactcccagaatctcacacactctgcacgaaataggggagttaacctc
caagatccggattcccagtcttcccagaggtgctgcggaaactaa
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